Rapgef6 (Rap guanine nucleotide exchange factor (GEF) 6) - Rat Genome Database

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Gene: Rapgef6 (Rap guanine nucleotide exchange factor (GEF) 6) Mus musculus
Analyze
Symbol: Rapgef6
Name: Rap guanine nucleotide exchange factor (GEF) 6
RGD ID: 1621379
MGI Page MGI
Description: Predicted to enable several functions, including GTP-dependent protein binding activity; guanyl-nucleotide exchange factor activity; and phosphatidic acid binding activity. Predicted to be involved in Ras protein signal transduction; microvillus assembly; and protein localization to plasma membrane. Predicted to be located in centrosome and cytosol. Predicted to be active in apical plasma membrane and endocytic vesicle. Is expressed in nervous system. Orthologous to human RAPGEF6 (Rap guanine nucleotide exchange factor 6).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: A530068K01; AI844632; BB085664; C030018K18Rik; KIAA4052; mKIAA4052; PDZ domain containing guanine nucleotide exchange factor (GEF) 2; PDZ domain containing guanine nucleotide exchange factor(GEF)1; PDZ-GEF; PDZ-GEF2; Pdzgef; Pdzgef2; RA-GEF; RA-GEF-2; Ragef2; rap guanine nucleotide exchange factor 2; rap guanine nucleotide exchange factor 6; RIKEN cDNA C030018K18 gene
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391154,413,630 - 54,590,112 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1154,413,673 - 54,590,111 (+)EnsemblGRCm39 Ensembl
GRCm381154,522,809 - 54,699,286 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1154,522,847 - 54,699,285 (+)EnsemblGRCm38mm10GRCm38
MGSCv371154,336,349 - 54,512,787 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361154,366,270 - 54,542,708 (+)NCBIMGSCv36mm8
Celera1159,110,416 - 59,286,532 (+)NCBICelera
Cytogenetic Map11B1.3NCBI
cM Map1132.13NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Mouse MP Annotation Import Pipeline RGD automated import pipeline
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:11544199   PMID:12466851   PMID:12477932   PMID:12520002   PMID:14610273   PMID:16141072   PMID:16141073  
PMID:17538012   PMID:17967808   PMID:18799693   PMID:21267068   PMID:21873635   PMID:23055939   PMID:24491570   PMID:25838543   PMID:26057047   PMID:27390776   PMID:27984743   PMID:29747665  
PMID:32600317  


Genomics

Comparative Map Data
Rapgef6
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391154,413,630 - 54,590,112 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1154,413,673 - 54,590,111 (+)EnsemblGRCm39 Ensembl
GRCm381154,522,809 - 54,699,286 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1154,522,847 - 54,699,285 (+)EnsemblGRCm38mm10GRCm38
MGSCv371154,336,349 - 54,512,787 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361154,366,270 - 54,542,708 (+)NCBIMGSCv36mm8
Celera1159,110,416 - 59,286,532 (+)NCBICelera
Cytogenetic Map11B1.3NCBI
cM Map1132.13NCBI
RAPGEF6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385131,423,921 - 131,635,229 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5131,423,921 - 131,635,231 (-)EnsemblGRCh38hg38GRCh38
GRCh375130,759,614 - 130,970,922 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 365130,789,500 - 130,998,828 (-)NCBINCBI36Build 36hg18NCBI36
Build 345130,789,502 - 130,998,828NCBI
Celera5126,889,939 - 127,101,211 (-)NCBICelera
Cytogenetic Map5q31.1NCBI
HuRef5125,950,778 - 126,162,839 (-)NCBIHuRef
CHM1_15130,192,482 - 130,403,787 (-)NCBICHM1_1
T2T-CHM13v2.05131,943,517 - 132,155,185 (-)NCBIT2T-CHM13v2.0
Rapgef6
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81039,156,573 - 39,324,947 (+)NCBIGRCr8
mRatBN7.21038,655,854 - 38,824,227 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1038,655,867 - 38,823,211 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1043,341,598 - 43,507,466 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01042,831,675 - 42,997,544 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01038,335,387 - 38,501,259 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01039,875,322 - 40,039,929 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1039,875,371 - 40,039,929 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01039,648,090 - 39,812,677 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41039,935,952 - 40,101,623 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11039,949,735 - 40,131,150 (+)NCBI
Celera1037,996,384 - 38,160,561 (+)NCBICelera
Cytogenetic Map10q22NCBI
Rapgef6
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554082,902,530 - 3,109,273 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554082,902,530 - 3,109,273 (-)NCBIChiLan1.0ChiLan1.0
RAPGEF6
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24126,748,041 - 126,963,393 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15124,887,606 - 125,099,354 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05126,852,474 - 127,064,421 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15133,018,249 - 133,228,855 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5133,018,249 - 133,228,851 (-)Ensemblpanpan1.1panPan2
RAPGEF6
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11119,775,874 - 19,973,784 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1118,572,675 - 18,769,686 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01120,553,837 - 20,751,119 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1120,555,931 - 20,751,086 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11119,281,977 - 19,478,740 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01119,128,865 - 19,326,348 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01119,727,794 - 19,938,614 (-)NCBIUU_Cfam_GSD_1.0
Rapgef6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213116,431,902 - 116,642,432 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366473,434,577 - 3,647,456 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366473,434,409 - 3,647,116 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RAPGEF6
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl2133,708,266 - 133,951,433 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.12133,708,265 - 133,951,433 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.22139,027,117 - 139,199,596 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RAPGEF6
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12334,266,842 - 34,474,439 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2334,266,368 - 34,474,432 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603443,492,385 - 43,699,735 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rapgef6
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473340,402,318 - 40,609,234 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473340,403,340 - 40,609,104 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Rapgef6
3696 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1967
Count of miRNA genes:718
Interacting mature miRNAs:940
Transcripts:ENSMUST00000094536, ENSMUST00000101206, ENSMUST00000102743, ENSMUST00000108894, ENSMUST00000108895, ENSMUST00000136494, ENSMUST00000139360, ENSMUST00000149372, ENSMUST00000155132
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
27226798Scvln18_msacral vertebrae length 2, 16 week (mouse)11325000060690826Mouse
26884446Sklq10_mskull length QTL 10, 10 week (mouse)11325000062890826Mouse
26884453Sklq16_mskull length QTL 16, 16 week (mouse)11325000072690826Mouse
13208559Wght10_mweight 10 (mouse)11395000088890826Mouse
13208558Lgth12_mbody length 12 (mouse)11395000094890826Mouse
1300905Scc6_mcolon tumor susceptibility 6 (mouse)Not determined11688027789019734Mouse
27226738Metcl11_mmetatarsal-calcaneal length 11, 10 week (mouse)11885000061390826Mouse
26884401Huml4_mhumerus length 4, 10 week (mouse)111155000068490826Mouse
27226762Feml21_mfemur length 21, 16 week (mouse)111175000065990826Mouse
1357640Orq2_movulation rate QTL 2 (mouse)Not determined111226863768500330Mouse
4141127W3q4_mweight 3 weeks QTL 4 (mouse)Not determined1226863768500330Mouse
4141470Egq4_mearly growth QTL 4 (mouse)Not determined1226863768500330Mouse
4142109W10q2_mweight 10 weeks QTL 2 (mouse)Not determined1226863768500330Mouse
4141582Lgaq1_mlate growth adjusted QTL 1 (mouse)Not determined1226863768500330Mouse
4142308W6q3_mweight 6 weeks QTL 3 (mouse)Not determined111226863768500330Mouse
4142216Lgq1_mlate growth QTL 1 (mouse)Not determined1226863768500330Mouse
4141966Tailq1_mtail length QTL 1 (mouse)Not determined1226863768500330Mouse
1357851Scfq3_msubcutaneous fat pad weight QTL 3 (mouse)Not determined111226863768500330Mouse
1357720Kidpq1_mkidney weight percentage QTL 1 (mouse)Not determined111226863768500330Mouse
1357437Epfq4_mepididymal fat pad weight QTL 4 (mouse)Not determined111226863768500330Mouse
1559002Lmrq4_mLeishmania major resistance QTL 4 (mouse)Not determined111226863769684947Mouse
39128214Lwq20_mliver weight QTL 20 (mouse)1112268637118022724Mouse
1558945Orgwq8_morgan weight QTL 8 (mouse)Not determined111705617567078411Mouse
10053687Eae6_msusceptibility to experimental allergic encephalomyelitis 6 (mouse)Not determined111778196668500330Mouse
4141894Nidd6k_mNidd6 on KK-A (mouse)Not determined1912420496897826Mouse
4141398Tgq22_mtriglyceride QTL 22 (mouse)Not determined2116340655163406Mouse
10412246Dfs2_mdental fluorosis suseptibility 2 (mouse)Not determined112180736495881231Mouse
10044006Hbnr13_mHeligmosomoides bakeri nematode resistance 13 (mouse)Not determined112577262659772741Mouse
1357844Si5lq5_mserum IGFBP-5 level QTL 5 (mouse)Not determined112816587362165976Mouse
13524848Ppiq7_mprepulse inhibition QTL 7 (mouse)112856914762569147Mouse
1301426Desp2_mdespair 2 (mouse)Not determined112870858162708700Mouse
11522752Cocia18_mcocaine-induced activity, QTL 18 (mouse)113100820965008209Mouse
11059563Lmr31_mleishmaniasis resistance 31 (mouse)113210057766100694Mouse
1357782Char8_mP. chabaudi malaria resistance QTL 8 (mouse)Not determined113557861669684987Mouse
13208569Bmiq10_mbody mass index QTL 10 (mouse)113589082784890826Mouse
1301328Mol4_mmodifier of LPS-response 4 (mouse)Not determined113628257783481356Mouse
1301788Lbw8_mlupus NZB x NZW 8 (mouse)Not determined113650328770509492Mouse
1301896Tria1_mT-cell receptor induced activation 1 (mouse)Not determined113661356570613855Mouse
4141853Skmw17_mskeletal muscle weight 17 (mouse)Not determined113708094171081064Mouse
4142475Ity2a_mimmunity to S. typhimurium 2a (mouse)Not determined113776858060402716Mouse
10766457Nwa3_mNew Zealand White autoimmunity 3 (mouse)113801611572016209Mouse
11532698Sluc36a_msusceptibility to lung cancer 36a (mouse)114225661776256730Mouse
11532699Sluc36b_msusceptibility to lung cancer 36b (mouse)114225661776256730Mouse
4142300Ctrq3_mC. trachomatis resistance QTL 3 (mouse)Not determined114463003876854757Mouse
4141367Inf1_macute ozone induced inflammation (mouse)Not determined44630038113058009Mouse
1302021Nidd1n_mnon-insulin-dependent diabetes mellitus 1 in NSY (mouse)Not determined114516587379978324Mouse
1357878Mastr_mmodifier of astrocytoma (mouse)Not determined114570858189818733Mouse
1300765Bbaa4_mB.burgdorferi-associated arthritis 4 (mouse)Not determined114618516780185262Mouse
1301988Bmd11_mbone mineral density 11 (mouse)Not determined114631940780319522Mouse
1301830Ssta4_msusceptibility to Salmonella typhimurium antigens 4 (mouse)Not determined115007819184078411Mouse
13524840Ppiq9a_mprepulse inhibition QTL 9a (mouse)115249438586494385Mouse
1300774Pgia7_mproteoglycan induced arthritis 7 (mouse)Not determined115339058887390737Mouse
4141084Spqq1_msperm quality QTL 1 (mouse)Not determined5406567063319522Mouse
1302186Blmpf2_mbleomycin-induced pulmonary fibrosis 2 (mouse)Not determined115406567067078411Mouse
4142148Ckdbp2_mchronic kidney disease blood pressure locus 2 (mouse)Not determined115408094165103841Mouse
4141830Pregq1_mpregnancy QTL 1 (mouse)Not determined115412675283733652Mouse

Markers in Region
AI844632  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381154,698,904 - 54,699,045UniSTSGRCm38
MGSCv371154,512,406 - 54,512,547UniSTSGRCm37
Celera1159,286,151 - 59,286,292UniSTS
Cytogenetic Map11B1.3UniSTS
Whitehead/MRC_RH11742.8UniSTS
BB085664  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381154,649,305 - 54,649,453UniSTSGRCm38
MGSCv371154,462,807 - 54,462,955UniSTSGRCm37
Celera1159,236,917 - 59,237,065UniSTS
Cytogenetic Map11B1.3UniSTS
Whitehead/MRC_RH11741.09UniSTS
D11Mit241  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381154,605,066 - 54,605,190UniSTSGRCm38
MGSCv371154,418,568 - 54,418,692UniSTSGRCm37
Celera1159,192,648 - 59,192,772UniSTS
Cytogenetic Map11B1.3UniSTS
cM Map1128.3UniSTS
Whitehead Genetic1125.1UniSTS
D9Mit34.1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map7F1UniSTS
Cytogenetic Map13D1UniSTS
Cytogenetic Map1C3UniSTS
Cytogenetic Map2C1.3UniSTS
Cytogenetic Map19D1UniSTS
Cytogenetic Map9F1UniSTS
Cytogenetic Map1FUniSTS
Cytogenetic Map7D3UniSTS
Cytogenetic Map11E2UniSTS
Cytogenetic Map3F2UniSTS
Cytogenetic Map14C3UniSTS
Cytogenetic Map9A3UniSTS
Cytogenetic Map2H2UniSTS
Cytogenetic Map11E1UniSTS
Cytogenetic Map2H4UniSTS
Cytogenetic Map8B3.3UniSTS
Cytogenetic Map4D1UniSTS
Cytogenetic Map4E2UniSTS
Cytogenetic Map2E5UniSTS
Cytogenetic Map11B4UniSTS
Cytogenetic Map5G3UniSTS
Cytogenetic MapXA5UniSTS
Cytogenetic Map10C1UniSTS
Cytogenetic Map12A1.1UniSTS
Cytogenetic Map6F2UniSTS
Cytogenetic Map1C1.3UniSTS
Cytogenetic Map16B1UniSTS
Cytogenetic Map12C1UniSTS
Cytogenetic Map7E2UniSTS
Cytogenetic Map9F2UniSTS
Cytogenetic Map5FUniSTS
Cytogenetic Map2H1UniSTS
Cytogenetic Map2E2UniSTS
Cytogenetic Map15F1UniSTS
Cytogenetic Map15E1UniSTS
Cytogenetic Map3G2UniSTS
Cytogenetic Map6F3UniSTS
Cytogenetic Map13B3UniSTS
Cytogenetic Map12F1UniSTS
Cytogenetic Map1E4UniSTS
Cytogenetic Map1E3UniSTS
Cytogenetic Map5E1UniSTS
Cytogenetic Map7F3UniSTS
Cytogenetic Map16B3UniSTS
Cytogenetic Map14D2UniSTS
Cytogenetic Map19C2UniSTS
Cytogenetic Map19D3UniSTS
Cytogenetic Map1H5UniSTS
Cytogenetic Map1DUniSTS
Cytogenetic Map14BUniSTS
Cytogenetic Map11CUniSTS
Cytogenetic Map10B4UniSTS
Cytogenetic Map6G3UniSTS
Cytogenetic Map7A1UniSTS
Cytogenetic Map7A3UniSTS
Cytogenetic Map8E1UniSTS
Cytogenetic Map8A2UniSTS
Cytogenetic Map4D3UniSTS
Cytogenetic Map2BUniSTS
Cytogenetic Map5A3UniSTS
Cytogenetic Map9DUniSTS
Cytogenetic Map5C1UniSTS
Cytogenetic Map19C3UniSTS
Cytogenetic Map13A2-A3UniSTS
Cytogenetic Map4C6UniSTS
Cytogenetic Map17DUniSTS
Cytogenetic Map17B1UniSTS
Cytogenetic Map17A3.3UniSTS
Cytogenetic Map13A1UniSTS
Cytogenetic Map3F2.1UniSTS
Cytogenetic Map15D3UniSTS
Cytogenetic Map8D2UniSTS
Cytogenetic Map12A3UniSTS
Cytogenetic Map1H2.1UniSTS
Cytogenetic Map7F5UniSTS
Cytogenetic Map7CUniSTS
Cytogenetic Map2E1UniSTS
Cytogenetic Map11B2UniSTS
Cytogenetic Map16A3UniSTS
Cytogenetic Map5C3.3UniSTS
Cytogenetic Map16A1UniSTS
Cytogenetic Map5G1UniSTS
Cytogenetic Map6A2UniSTS
Cytogenetic Map7B1UniSTS
Cytogenetic Map3F2.2UniSTS
Cytogenetic Map5C3.1UniSTS
Cytogenetic Map2C3UniSTS
Cytogenetic Map17A3.2-A3.3UniSTS
Cytogenetic Map6E3UniSTS
Cytogenetic Map11B1.1UniSTS
Cytogenetic Map1H6UniSTS
Cytogenetic Map2C2UniSTS
Cytogenetic Map19CUniSTS
Cytogenetic Map17E1.3UniSTS
Cytogenetic Map5A1UniSTS
Cytogenetic Map11B5UniSTS
Cytogenetic Map9A5.2UniSTS
Cytogenetic Map1A1UniSTS
Cytogenetic Map13A5UniSTS
Cytogenetic MapXA1.1UniSTS
Cytogenetic Map4D2.3UniSTS
Cytogenetic Map4B3UniSTS
Cytogenetic Map3A3UniSTS
Cytogenetic Map2A3UniSTS
Cytogenetic Map8CUniSTS
Cytogenetic Map12EUniSTS
Cytogenetic Map10C2UniSTS
Cytogenetic Map5G2UniSTS
Cytogenetic Map5B1UniSTS
Cytogenetic Map3F1UniSTS
Cytogenetic Map2H3UniSTS
Cytogenetic Map2A1UniSTS
Cytogenetic Map1H1UniSTS
Cytogenetic Map15F3UniSTS
Cytogenetic Map9E1UniSTS
Cytogenetic Map9CUniSTS
Cytogenetic Map1A2UniSTS
Cytogenetic Map12C3UniSTS
Cytogenetic Map19AUniSTS
Cytogenetic Map5B2UniSTS
Cytogenetic Map3DUniSTS
Cytogenetic Map11B1.3UniSTS
Cytogenetic Map6B1UniSTS
Cytogenetic MapXC-DUniSTS
Cytogenetic Map5G1.3UniSTS
Cytogenetic Map7D1-E2UniSTS
Cytogenetic Map11A1UniSTS
Cytogenetic Map13B1UniSTS
Cytogenetic Map1H2.2UniSTS
Cytogenetic Map8C3UniSTS
Cytogenetic Map11DUniSTS
Cytogenetic MapXA7.3UniSTS
Cytogenetic Map16C1.1UniSTS
Cytogenetic Map15F2UniSTS
Cytogenetic Map9A2UniSTS
Cytogenetic Map1H4-H6UniSTS
Cytogenetic Map12D2UniSTS
Cytogenetic Map1G3UniSTS
Cytogenetic Map5E5UniSTS
Cytogenetic Map1H3UniSTS
Cytogenetic Map19BUniSTS
cM Map950.0UniSTS
Whitehead Genetic943.7UniSTS
D10Mit157.2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map6D1UniSTS
Cytogenetic Map16B4UniSTS
Cytogenetic Map18E2UniSTS
Cytogenetic Map4C3UniSTS
Cytogenetic Map7B2UniSTS
Cytogenetic Map4D2.3UniSTS
Cytogenetic Map11E1UniSTS
Cytogenetic Map14E2.2UniSTS
Cytogenetic Map4C7UniSTS
Cytogenetic Map2H4UniSTS
Cytogenetic Map1FUniSTS
Cytogenetic Map6C3UniSTS
Cytogenetic Map11DUniSTS
Cytogenetic Map3G2UniSTS
Cytogenetic Map17A1UniSTS
Cytogenetic Map9F2UniSTS
Cytogenetic Map12F1UniSTS
Cytogenetic Map19C2UniSTS
Cytogenetic Map3BUniSTS
Cytogenetic Map8C1UniSTS
Cytogenetic Map18A2UniSTS
Cytogenetic Map3F2UniSTS
Cytogenetic Map14C3UniSTS
Cytogenetic Map8E1UniSTS
Cytogenetic Map8E2UniSTS
Cytogenetic Map5B1UniSTS
Cytogenetic Map18B1UniSTS
Cytogenetic Map9CUniSTS
Cytogenetic Map14C2UniSTS
Cytogenetic Map6A1UniSTS
Cytogenetic Map10B4UniSTS
Cytogenetic Map13D2.1UniSTS
Cytogenetic Map5E5UniSTS
Cytogenetic Map11B1.3UniSTS
Cytogenetic Map4D1UniSTS
Cytogenetic Map9A5.2UniSTS
Cytogenetic Map3F1UniSTS
Cytogenetic Map17E3UniSTS
Cytogenetic Map11B3UniSTS
Cytogenetic Map1H4UniSTS
Cytogenetic Map6A3UniSTS
Cytogenetic Map5E4-E5UniSTS
Cytogenetic Map15E1UniSTS
Cytogenetic Map13DUniSTS
Cytogenetic Map14BUniSTS
Cytogenetic Map14D1UniSTS
Cytogenetic Map7B4UniSTS
Cytogenetic Map8D3UniSTS
Cytogenetic MapXDUniSTS
Cytogenetic Map17A3.3UniSTS
Cytogenetic Map7E2UniSTS
Cytogenetic Map1H2.3UniSTS
Cytogenetic Map7A2UniSTS
Cytogenetic Map7F3UniSTS
Cytogenetic Map9F1UniSTS
Cytogenetic Map10C1UniSTS
Cytogenetic Map4E2UniSTS
Cytogenetic Map16A1UniSTS
Cytogenetic Map8B3.3UniSTS
Cytogenetic Map8D2UniSTS
Cytogenetic Map3DUniSTS
Cytogenetic Map15D2UniSTS
Cytogenetic Map17B1UniSTS
Cytogenetic Map7A3UniSTS
Cytogenetic Map15F1UniSTS
Cytogenetic Map16B2UniSTS
Cytogenetic Map7CUniSTS
Cytogenetic Map3F2.1UniSTS
Cytogenetic Map6F3UniSTS
Cytogenetic Map1C4UniSTS
Cytogenetic Map11E2UniSTS
Cytogenetic Map11B5UniSTS
Cytogenetic Map9F3UniSTS
Cytogenetic Map2BUniSTS
Cytogenetic Map13B3UniSTS
Cytogenetic Map9A4UniSTS
Cytogenetic Map5A3UniSTS
Cytogenetic Map2H1UniSTS
Cytogenetic Map16B1UniSTS
Cytogenetic Map1A5UniSTS
Cytogenetic Map11CUniSTS
Cytogenetic Map9E1UniSTS
Cytogenetic Map6G1UniSTS
Cytogenetic MapXA2UniSTS
Cytogenetic Map13B1UniSTS
Cytogenetic Map5E2UniSTS
Cytogenetic Map12C1UniSTS
Cytogenetic Map5FUniSTS
Cytogenetic Map4D3UniSTS
Cytogenetic Map10C2UniSTS
Cytogenetic Map9BUniSTS
Cytogenetic Map5G2UniSTS
Cytogenetic Map7F1UniSTS
Cytogenetic Map12C3UniSTS
Cytogenetic Map10A4UniSTS
Cytogenetic Map8A2UniSTS
Cytogenetic Map18A1UniSTS
Cytogenetic Map12A1.1UniSTS
Cytogenetic Map1C2UniSTS
Cytogenetic Map11B2UniSTS
Cytogenetic Map6E3UniSTS
Cytogenetic Map5C3.3UniSTS
Cytogenetic Map1BUniSTS
Cytogenetic Map17A3.1UniSTS
Cytogenetic Map7A1UniSTS
Cytogenetic Map2E5UniSTS
Cytogenetic Map11A1UniSTS
Cytogenetic Map4B1UniSTS
Cytogenetic Map15A2UniSTS
Cytogenetic Map8C3UniSTS
Cytogenetic Map2A3UniSTS
Cytogenetic Map5G3UniSTS
Cytogenetic Map4A3UniSTS
Cytogenetic Map2H3UniSTS
Cytogenetic Map8A1UniSTS
Cytogenetic Map8A1.1UniSTS
Cytogenetic Map16A3UniSTS
Cytogenetic Map10B1UniSTS
Cytogenetic Map19AUniSTS
Cytogenetic Map10A1UniSTS
Cytogenetic Map13D1UniSTS
Cytogenetic Map4A1UniSTS
Cytogenetic Map9A3UniSTS
Cytogenetic Map17CUniSTS
Cytogenetic Map1DUniSTS
Cytogenetic Map5E3UniSTS
Cytogenetic Map15D3UniSTS
Cytogenetic Map2H2UniSTS
Cytogenetic Map7D3UniSTS
Cytogenetic Map2A1UniSTS
Cytogenetic Map14C1UniSTS
Cytogenetic Map14E5UniSTS
Cytogenetic Map10CUniSTS
Cytogenetic Map18B2UniSTS
Cytogenetic Map2F1UniSTS
Cytogenetic Map10D3UniSTS
Cytogenetic Map17A2UniSTS
Cytogenetic Map2C3UniSTS
Cytogenetic Map1C3UniSTS
Cytogenetic Map17B2UniSTS
Cytogenetic Map5B2UniSTS
Cytogenetic Map5G1UniSTS
Cytogenetic Map4C6UniSTS
Cytogenetic Map13C3UniSTS
Cytogenetic Map2E1UniSTS
Cytogenetic Map17A3.2-A3.3UniSTS
Cytogenetic Map19C3UniSTS
Cytogenetic Map7E3UniSTS
Cytogenetic Map13C1UniSTS
Cytogenetic Map9E3.1UniSTS
Cytogenetic Map15E3UniSTS
Cytogenetic Map6B1UniSTS
Cytogenetic MapXE3UniSTS
Cytogenetic Map4C4UniSTS
Cytogenetic Map3E3UniSTS
Cytogenetic Map11A4UniSTS
Cytogenetic Map4C5UniSTS
Cytogenetic Map18B3UniSTS
Cytogenetic Map9A2UniSTS
Cytogenetic Map7E1UniSTS
Cytogenetic Map5D-E1UniSTS
Cytogenetic Map5B3UniSTS
Cytogenetic Map13A2-A3UniSTS
Cytogenetic Map5A2UniSTS
Cytogenetic Map4B3UniSTS
Cytogenetic Map1E4UniSTS
Cytogenetic Map17E4UniSTS
Cytogenetic Map1G2UniSTS
Cytogenetic Map15B3.1UniSTS
Cytogenetic Map12EUniSTS
Cytogenetic MapXA5UniSTS
Cytogenetic Map6A3.3UniSTS
Cytogenetic Map6G3UniSTS
Cytogenetic Map6F2UniSTS
Cytogenetic Map5C1UniSTS
Cytogenetic Map4D2.1UniSTS
Cytogenetic Map4A5UniSTS
Cytogenetic Map3F2.2UniSTS
Cytogenetic Map1E3-E4UniSTS
Cytogenetic Map9F1-F3UniSTS
Cytogenetic Map1C1.1UniSTS
Cytogenetic Map14D2UniSTS
Cytogenetic Map12A2UniSTS
Cytogenetic Map17A3-BUniSTS
Cytogenetic Map7F5UniSTS
Cytogenetic Map14A3UniSTS
Cytogenetic Map5G1.1UniSTS
Cytogenetic MapXF2-F4UniSTS
Cytogenetic Map7D2UniSTS
Cytogenetic Map2F3UniSTS
Cytogenetic Map10A3UniSTS
Cytogenetic MapXA7.3UniSTS
Cytogenetic Map9F1-F2UniSTS
Cytogenetic Map13A3.2UniSTS
Cytogenetic Map10A2UniSTS
Cytogenetic Map1C1UniSTS
Cytogenetic Map1A1UniSTS
Cytogenetic Map12D3UniSTS
Cytogenetic Map1A3-A5UniSTS
Cytogenetic Map2A2UniSTS
Cytogenetic Map3A1UniSTS
Cytogenetic MapXA3.3UniSTS
Cytogenetic Map16A-B1UniSTS
Cytogenetic Map1D2.3UniSTS
Cytogenetic Map6B2.3UniSTS
Cytogenetic Map2G3UniSTS
Cytogenetic MapXA2-A3.1UniSTS
Cytogenetic Map9A5.3UniSTS
Cytogenetic Map14A2-BUniSTS
Cytogenetic Map8E1-E2UniSTS
Cytogenetic Map8A3UniSTS
Cytogenetic Map1G3-H1UniSTS
Cytogenetic Map8B3-C1UniSTS
Cytogenetic Map19C1UniSTS
Cytogenetic Map8C5UniSTS
Cytogenetic Map8A4UniSTS
Cytogenetic Map15F3UniSTS
Cytogenetic Map14E4UniSTS
Cytogenetic Map4D2.2UniSTS
Cytogenetic MapXF5UniSTS
cM Map1040.0UniSTS
Whitehead Genetic1033.9UniSTS
AI233944  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381154,552,852 - 54,554,136UniSTSGRCm38
MGSCv371154,366,354 - 54,367,638UniSTSGRCm37
Celera1159,140,488 - 59,141,773UniSTS
Cytogenetic Map11B1.3UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001252494 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001252496 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001252497 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001252498 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_175258 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006532560 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006532561 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006532562 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006532563 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006532564 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006532565 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006532566 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017314348 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030245697 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036156442 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036156443 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036156444 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004936869 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004936870 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004936871 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AK021094 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK038235 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK040089 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK045540 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK049228 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK049669 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK080138 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK083964 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK143331 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK148692 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK164343 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK164557 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK167055 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK171771 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK220459 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL596127 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL607091 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AW493254 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BB465827 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BB652674 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC019702 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC025553 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC059847 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC092525 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC141182 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC145503 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466575 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000094536   ⟹   ENSMUSP00000092114
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1154,513,192 - 54,578,851 (+)Ensembl
GRCm38.p6 Ensembl1154,622,366 - 54,688,025 (+)Ensembl
RefSeq Acc Id: ENSMUST00000101206   ⟹   ENSMUSP00000098766
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1154,413,716 - 54,587,805 (+)Ensembl
GRCm38.p6 Ensembl1154,522,890 - 54,696,979 (+)Ensembl
RefSeq Acc Id: ENSMUST00000102743   ⟹   ENSMUSP00000099804
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1154,413,673 - 54,590,111 (+)Ensembl
GRCm38.p6 Ensembl1154,522,847 - 54,699,285 (+)Ensembl
RefSeq Acc Id: ENSMUST00000108894   ⟹   ENSMUSP00000104522
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1154,513,192 - 54,578,930 (+)Ensembl
GRCm38.p6 Ensembl1154,622,366 - 54,688,104 (+)Ensembl
RefSeq Acc Id: ENSMUST00000108895   ⟹   ENSMUSP00000104523
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1154,413,716 - 54,525,835 (+)Ensembl
GRCm38.p6 Ensembl1154,522,890 - 54,635,009 (+)Ensembl
RefSeq Acc Id: ENSMUST00000136494   ⟹   ENSMUSP00000114574
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1154,582,258 - 54,587,312 (+)Ensembl
GRCm38.p6 Ensembl1154,691,432 - 54,696,486 (+)Ensembl
RefSeq Acc Id: ENSMUST00000139360
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1154,413,737 - 54,452,422 (+)Ensembl
GRCm38.p6 Ensembl1154,522,911 - 54,561,596 (+)Ensembl
RefSeq Acc Id: ENSMUST00000149372
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1154,486,972 - 54,529,690 (+)Ensembl
GRCm38.p6 Ensembl1154,596,146 - 54,638,864 (+)Ensembl
RefSeq Acc Id: ENSMUST00000155132
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1154,413,715 - 54,443,885 (+)Ensembl
GRCm38.p6 Ensembl1154,522,889 - 54,553,059 (+)Ensembl
RefSeq Acc Id: ENSMUST00000207429   ⟹   ENSMUSP00000147135
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1154,413,772 - 54,587,170 (+)Ensembl
GRCm38.p6 Ensembl1154,522,946 - 54,696,344 (+)Ensembl
RefSeq Acc Id: ENSMUST00000218995   ⟹   ENSMUSP00000151509
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1154,487,000 - 54,540,165 (+)Ensembl
GRCm38.p6 Ensembl1154,596,174 - 54,649,339 (+)Ensembl
RefSeq Acc Id: ENSMUST00000220269
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1154,487,000 - 54,540,288 (+)Ensembl
GRCm38.p6 Ensembl1154,596,174 - 54,649,462 (+)Ensembl
RefSeq Acc Id: ENSMUST00000239168   ⟹   ENSMUSP00000159106
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1154,517,165 - 54,590,111 (+)Ensembl
GRCm38.p6 Ensembl1154,626,339 - 54,699,285 (+)Ensembl
RefSeq Acc Id: NM_001252494   ⟹   NP_001239423
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391154,413,715 - 54,590,111 (+)NCBI
GRCm381154,522,845 - 54,699,286 (+)NCBI
Celera1159,110,414 - 59,286,533 (+)ENTREZGENE
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001252496   ⟹   NP_001239425
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391154,413,715 - 54,590,111 (+)NCBI
GRCm381154,522,845 - 54,699,286 (+)NCBI
Celera1159,110,414 - 59,286,533 (+)ENTREZGENE
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001252497   ⟹   NP_001239426
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391154,486,972 - 54,540,290 (+)NCBI
GRCm381154,596,146 - 54,649,464 (+)NCBI
Celera1159,110,414 - 59,286,533 (+)ENTREZGENE
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001252498   ⟹   NP_001239427
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391154,486,972 - 54,529,690 (+)NCBI
GRCm381154,596,146 - 54,638,864 (+)NCBI
Celera1159,110,414 - 59,286,533 (+)ENTREZGENE
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_175258   ⟹   NP_780467
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391154,413,671 - 54,590,112 (+)NCBI
GRCm381154,522,845 - 54,699,286 (+)NCBI
MGSCv371154,336,349 - 54,512,787 (+)RGD
Celera1159,110,414 - 59,286,533 (+)ENTREZGENE
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006532560   ⟹   XP_006532623
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391154,413,641 - 54,590,112 (+)NCBI
GRCm381154,522,809 - 54,699,286 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006532561   ⟹   XP_006532624
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391154,413,645 - 54,590,112 (+)NCBI
GRCm381154,522,845 - 54,699,286 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006532562   ⟹   XP_006532625
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391154,413,641 - 54,590,112 (+)NCBI
GRCm381154,522,890 - 54,699,286 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006532563   ⟹   XP_006532626
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391154,413,641 - 54,590,112 (+)NCBI
GRCm381154,522,810 - 54,699,286 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006532564   ⟹   XP_006532627
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391154,413,640 - 54,590,112 (+)NCBI
GRCm381154,522,845 - 54,699,286 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006532565   ⟹   XP_006532628
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391154,486,663 - 54,590,112 (+)NCBI
GRCm381154,590,023 - 54,699,286 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006532566   ⟹   XP_006532629
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391154,486,665 - 54,590,112 (+)NCBI
GRCm381154,596,104 - 54,699,286 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017314348   ⟹   XP_017169837
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391154,413,641 - 54,590,112 (+)NCBI
GRCm381154,522,845 - 54,699,286 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030245697   ⟹   XP_030101557
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391154,413,641 - 54,590,112 (+)NCBI
GRCm381154,522,810 - 54,699,286 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036156442   ⟹   XP_036012335
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391154,413,641 - 54,590,112 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036156443   ⟹   XP_036012336
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391154,413,641 - 54,590,112 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036156444   ⟹   XP_036012337
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391154,413,715 - 54,590,112 (+)NCBI
Sequence:
RefSeq Acc Id: XR_004936869
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391154,413,630 - 54,581,014 (+)NCBI
Sequence:
RefSeq Acc Id: XR_004936870
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391154,413,631 - 54,581,014 (+)NCBI
Sequence:
RefSeq Acc Id: XR_004936871
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391154,413,631 - 54,581,014 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001239423 (Get FASTA)   NCBI Sequence Viewer  
  NP_001239425 (Get FASTA)   NCBI Sequence Viewer  
  NP_001239426 (Get FASTA)   NCBI Sequence Viewer  
  NP_001239427 (Get FASTA)   NCBI Sequence Viewer  
  NP_780467 (Get FASTA)   NCBI Sequence Viewer  
  XP_006532623 (Get FASTA)   NCBI Sequence Viewer  
  XP_006532624 (Get FASTA)   NCBI Sequence Viewer  
  XP_006532625 (Get FASTA)   NCBI Sequence Viewer  
  XP_006532626 (Get FASTA)   NCBI Sequence Viewer  
  XP_006532627 (Get FASTA)   NCBI Sequence Viewer  
  XP_006532628 (Get FASTA)   NCBI Sequence Viewer  
  XP_006532629 (Get FASTA)   NCBI Sequence Viewer  
  XP_017169837 (Get FASTA)   NCBI Sequence Viewer  
  XP_030101557 (Get FASTA)   NCBI Sequence Viewer  
  XP_036012335 (Get FASTA)   NCBI Sequence Viewer  
  XP_036012336 (Get FASTA)   NCBI Sequence Viewer  
  XP_036012337 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH19702 (Get FASTA)   NCBI Sequence Viewer  
  AAH25553 (Get FASTA)   NCBI Sequence Viewer  
  AAH92525 (Get FASTA)   NCBI Sequence Viewer  
  AAI41183 (Get FASTA)   NCBI Sequence Viewer  
  BAC32411 (Get FASTA)   NCBI Sequence Viewer  
  BAC33622 (Get FASTA)   NCBI Sequence Viewer  
  BAD90488 (Get FASTA)   NCBI Sequence Viewer  
  BAE25343 (Get FASTA)   NCBI Sequence Viewer  
  BAE37750 (Get FASTA)   NCBI Sequence Viewer  
  BAE39219 (Get FASTA)   NCBI Sequence Viewer  
  EDL33531 (Get FASTA)   NCBI Sequence Viewer  
  EDL33532 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000092114.4
  ENSMUSP00000098766
  ENSMUSP00000098766.4
  ENSMUSP00000099804
  ENSMUSP00000099804.4
  ENSMUSP00000104522.2
  ENSMUSP00000104523.2
  ENSMUSP00000114574.2
  ENSMUSP00000147135
  ENSMUSP00000147135.2
  ENSMUSP00000151509
  ENSMUSP00000151509.2
  ENSMUSP00000159106
  ENSMUSP00000159106.2
RefSeq Acc Id: NP_780467   ⟸   NM_175258
- Peptide Label: isoform 2
- UniProtKB: Q5NCJ0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001239425   ⟸   NM_001252496
- Peptide Label: isoform 3
- UniProtKB: Q3TKC6 (UniProtKB/TrEMBL),   Q5DTR1 (UniProtKB/TrEMBL),   Q8BLC8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001239423   ⟸   NM_001252494
- Peptide Label: isoform 1
- UniProtKB: B2RUJ6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001239426   ⟸   NM_001252497
- Peptide Label: isoform 4
- UniProtKB: Q3TPI6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001239427   ⟸   NM_001252498
- Peptide Label: isoform 5
- UniProtKB: Q3TPI6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006532627   ⟸   XM_006532564
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_006532623   ⟸   XM_006532560
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006532624   ⟸   XM_006532561
- Peptide Label: isoform X2
- UniProtKB: Q5NCJ1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006532626   ⟸   XM_006532563
- Peptide Label: isoform X4
- UniProtKB: A0A5F8MPT3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006532625   ⟸   XM_006532562
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_006532628   ⟸   XM_006532565
- Peptide Label: isoform X9
- UniProtKB: A0A5F8MPT3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006532629   ⟸   XM_006532566
- Peptide Label: isoform X10
- UniProtKB: A0A5F8MPT3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017169837   ⟸   XM_017314348
- Peptide Label: isoform X7
- Sequence:
RefSeq Acc Id: XP_030101557   ⟸   XM_030245697
- Peptide Label: isoform X4
- UniProtKB: A0A5F8MPT3 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSMUSP00000151509   ⟸   ENSMUST00000218995
RefSeq Acc Id: ENSMUSP00000159106   ⟸   ENSMUST00000239168
RefSeq Acc Id: ENSMUSP00000098766   ⟸   ENSMUST00000101206
RefSeq Acc Id: ENSMUSP00000147135   ⟸   ENSMUST00000207429
RefSeq Acc Id: ENSMUSP00000104522   ⟸   ENSMUST00000108894
RefSeq Acc Id: ENSMUSP00000104523   ⟸   ENSMUST00000108895
RefSeq Acc Id: ENSMUSP00000092114   ⟸   ENSMUST00000094536
RefSeq Acc Id: ENSMUSP00000114574   ⟸   ENSMUST00000136494
RefSeq Acc Id: ENSMUSP00000099804   ⟸   ENSMUST00000102743
RefSeq Acc Id: XP_036012336   ⟸   XM_036156443
- Peptide Label: isoform X8
RefSeq Acc Id: XP_036012335   ⟸   XM_036156442
- Peptide Label: isoform X5
- UniProtKB: A0A5F8MPT3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_036012337   ⟸   XM_036156444
- Peptide Label: isoform X11
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q5NCJ1-F1-model_v2 AlphaFold Q5NCJ1 1-1609 view protein structure

Promoters
RGD ID:6821701
Promoter ID:MM_KWN:7447
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000050145,   ENSMUST00000101206,   NM_175258,   OTTMUST00000012625,   OTTMUST00000012626,   UC007IXY.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361154,335,441 - 54,336,482 (+)MPROMDB
RGD ID:6821700
Promoter ID:MM_KWN:7453
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_2Hour,   Lung
Transcripts:OTTMUST00000012630
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361154,504,674 - 54,505,174 (+)MPROMDB
RGD ID:8674662
Promoter ID:EPDNEW_M15362
Type:initiation region
Name:Rapgef6_1
Description:Mus musculus Rap guanine nucleotide exchange factor 6 , transcriptvariant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M15363  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381154,522,889 - 54,522,949EPDNEW
RGD ID:8674664
Promoter ID:EPDNEW_M15363
Type:initiation region
Name:Rapgef6_2
Description:Mus musculus Rap guanine nucleotide exchange factor 6 , transcriptvariant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M15362  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381154,596,138 - 54,596,198EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2384761 AgrOrtholog
Ensembl Genes ENSMUSG00000037533 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000094536.10 UniProtKB/TrEMBL
  ENSMUST00000101206 ENTREZGENE
  ENSMUST00000101206.10 UniProtKB/TrEMBL
  ENSMUST00000102743 ENTREZGENE
  ENSMUST00000102743.10 UniProtKB/TrEMBL
  ENSMUST00000108894.2 UniProtKB/TrEMBL
  ENSMUST00000108895.8 UniProtKB/TrEMBL
  ENSMUST00000136494.2 UniProtKB/TrEMBL
  ENSMUST00000149372 ENTREZGENE
  ENSMUST00000207429 ENTREZGENE
  ENSMUST00000207429.2 UniProtKB/TrEMBL
  ENSMUST00000218995 ENTREZGENE
  ENSMUST00000218995.2 UniProtKB/TrEMBL
  ENSMUST00000239168 ENTREZGENE
  ENSMUST00000239168.2 UniProtKB/TrEMBL
Gene3D-CATH 1.10.840.10 UniProtKB/TrEMBL
  2.30.42.10 UniProtKB/TrEMBL
  2.60.120.10 UniProtKB/TrEMBL
  Son of sevenless (SoS) protein Chain: S domain 1 UniProtKB/TrEMBL
InterPro cNMP-bd-like UniProtKB/TrEMBL
  cNMP-bd_dom UniProtKB/TrEMBL
  PDZ UniProtKB/TrEMBL
  PDZ_sf UniProtKB/TrEMBL
  Ras-assoc UniProtKB/TrEMBL
  Ras-like_GEF UniProtKB/TrEMBL
  Ras-like_Gua-exchang_fac_N UniProtKB/TrEMBL
  Ras_GEF_dom UniProtKB/TrEMBL
  RASGEF_cat_dom_sf UniProtKB/TrEMBL
  RasGRF_CDC25 UniProtKB/TrEMBL
  RmlC-like_jellyroll UniProtKB/TrEMBL
  Ubiquitin-rel_dom UniProtKB/TrEMBL
KEGG Report mmu:192786 UniProtKB/TrEMBL
MGD MGI:2384761 ENTREZGENE
NCBI Gene 192786 ENTREZGENE
PANTHER CYCLIC NUCLEOTIDE RAS GEF UniProtKB/TrEMBL
  CYTOSKELETON-ASSOCIATED PROTEIN 4 UniProtKB/TrEMBL
  PTHR23113 UniProtKB/TrEMBL
  RAP GUANINE NUCLEOTIDE EXCHANGE FACTOR 6 UniProtKB/TrEMBL
Pfam cNMP_binding UniProtKB/TrEMBL
  PDZ UniProtKB/TrEMBL
  PF00788 UniProtKB/TrEMBL
  RasGEF UniProtKB/TrEMBL
  RasGEF_N UniProtKB/TrEMBL
PhenoGen Rapgef6 PhenoGen
PROSITE CNMP_BINDING_3 UniProtKB/TrEMBL
  PDZ UniProtKB/TrEMBL
  PS50200 UniProtKB/TrEMBL
  RASGEF_CAT UniProtKB/TrEMBL
  RASGEF_NTER UniProtKB/TrEMBL
SMART cNMP UniProtKB/TrEMBL
  PDZ UniProtKB/TrEMBL
  RasGEF UniProtKB/TrEMBL
  RasGEFN UniProtKB/TrEMBL
  SM00314 UniProtKB/TrEMBL
Superfamily-SCOP cNMP_binding UniProtKB/TrEMBL
  PDZ UniProtKB/TrEMBL
  Ras_GEF UniProtKB/TrEMBL
  SSF54236 UniProtKB/TrEMBL
UniProt A0A1W2P734_MOUSE UniProtKB/TrEMBL
  A0A5F8MPT3 ENTREZGENE, UniProtKB/TrEMBL
  B2RUJ6 ENTREZGENE, UniProtKB/TrEMBL
  F7ACB1_MOUSE UniProtKB/TrEMBL
  Q3TKC6 ENTREZGENE, UniProtKB/TrEMBL
  Q3TPI6 ENTREZGENE, UniProtKB/TrEMBL
  Q3UPQ2_MOUSE UniProtKB/TrEMBL
  Q562E3_MOUSE UniProtKB/TrEMBL
  Q5DTR1 ENTREZGENE, UniProtKB/TrEMBL
  Q5NCJ0 ENTREZGENE, UniProtKB/TrEMBL
  Q5NCJ1 ENTREZGENE, UniProtKB/TrEMBL
  Q5NCJ2_MOUSE UniProtKB/TrEMBL
  Q5NCJ4_MOUSE UniProtKB/TrEMBL
  Q5NCJ5_MOUSE UniProtKB/TrEMBL
  Q8BLC8 ENTREZGENE, UniProtKB/TrEMBL
  Q8BX14_MOUSE UniProtKB/TrEMBL
  Q8R3E5_MOUSE UniProtKB/TrEMBL
  Q8VCK0_MOUSE UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-04-05 Rapgef6  Rap guanine nucleotide exchange factor (GEF) 6  C030018K18Rik  RIKEN cDNA C030018K18 gene  Data merged from RGD:1316956 737654 PROVISIONAL