Fam240a (family with sequence similarity 240 member A) - Rat Genome Database
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Gene: Fam240a (family with sequence similarity 240 member A) Mus musculus
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Symbol: Fam240a
Name: family with sequence similarity 240 member A
RGD ID: 1621309
MGI Page MGI
Description: Orthologous to human FAM240A (family with sequence similarity 240 member A).
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: Gm590; hypothetical protein LOC235634; predicted gene 590; uncharacterized protein LOC235634
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399110,743,444 - 110,756,579 (-)NCBIGRCm39mm39
GRCm389110,914,376 - 110,916,898 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9110,914,739 - 110,916,861 (-)EnsemblGRCm38mm10GRCm38
MGSCv379110,817,243 - 110,819,359 (-)NCBIGRCm37mm9NCBIm37
MGSCv369110,759,555 - 110,761,671 (-)NCBImm8
Celera9110,640,188 - 110,642,298 (-)NCBICelera
Cytogenetic Map9F2NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:14610273   PMID:21267068  


Genomics

Comparative Map Data
Fam240a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399110,743,444 - 110,756,579 (-)NCBIGRCm39mm39
GRCm389110,914,376 - 110,916,898 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9110,914,739 - 110,916,861 (-)EnsemblGRCm38mm10GRCm38
MGSCv379110,817,243 - 110,819,359 (-)NCBIGRCm37mm9NCBIm37
MGSCv369110,759,555 - 110,761,671 (-)NCBImm8
Celera9110,640,188 - 110,642,298 (-)NCBICelera
Cytogenetic Map9F2NCBI
FAM240A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl346,612,435 - 46,626,543 (+)EnsemblGRCh38hg38GRCh38
GRCh38346,612,525 - 46,626,543 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh37346,653,925 - 46,668,033 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36346,641,618 - 46,642,702 (+)NCBINCBI36hg18NCBI36
Celera346,604,344 - 46,605,431 (+)NCBI
Cytogenetic Map3p21.31NCBI
HuRef346,696,440 - 46,710,882 (+)NCBIHuRef
CHM1_1346,604,025 - 46,618,131 (+)NCBICHM1_1
Fam240a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.08118,488,107 - 118,488,499 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.08117,838,526 - 117,839,034 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Cytogenetic Map8q32NCBI
Fam240a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542025,462,056 - 25,463,508 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542025,461,700 - 25,468,516 (-)NCBIChiLan1.0ChiLan1.0
FAM240A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1347,614,755 - 47,628,829 (+)NCBIpanpan1.1PanPan1.1panPan2
Mhudiblu_PPA_v0346,510,139 - 46,524,135 (+)NCBIMhudiblu_PPA_v0panPan3
FAM240A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl2042,103,931 - 42,113,756 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.12042,103,202 - 42,118,069 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Fam240a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_004936596470,450 - 488,090 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FAM240A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1329,569,783 - 29,574,927 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11329,570,056 - 29,574,895 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21332,803,290 - 32,808,137 (+)NCBISscrofa10.2Sscrofa10.2susScr3
FAM240A
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1228,034,514 - 8,043,731 (+)NCBI
Fam240a
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473074,535,220 - 74,536,549 (-)NCBI


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4141833W10q13_mweight 10 weeks QTL 13 (mouse)Not determined63332429120362868Mouse
4141545Tailaq2_mtail length adjusted QTL 2 (mouse)Not determined63332429120362868Mouse
1357635Splq4_mspleen weight QTL 4 (mouse)Not determined963332429120362868Mouse
1302065El1_mepilepsy 1 (mouse)Not determined975775364114474379Mouse
10054492El7_mepilepsy 7 (mouse)Not determined975775364114474379Mouse
1301192Skts6_mskin tumor susceptibility 6 (mouse)Not determined978640645112640755Mouse
10401247Bglu14_mblood glucose level 14 (mouse)Not determined979397810113397888Mouse
1301732Char1_mP. chabaudi malaria resistance QTL 1 (mouse)Not determined981798268115798392Mouse
1300884Sluc11_msusceptibility to lung cancer 11 (mouse)Not determined982910333116910428Mouse
1357461Idd2_minsulin dependent diabetes susceptibility 2 (mouse)Not determined982910333116910428Mouse
10766454Char10_mP. chabaudi malaria resistance QTL 10 (mouse)982910333116910428Mouse
1301487Nociq1_mnociceptive sensitivity inflammatory QTL 1 (mouse)Not determined984528818118528921Mouse
1300549Bbaa17_mB. burgdorferi-associated arthritis 17 (mouse)Not determined986230401120230530Mouse
1302103Dob2_mdietary obesity 2 (mouse)Not determined986239845120289624Mouse
11251716Siim2_mstress induced immobility 2 (mouse)986748483120748483Mouse
12880422V25Dq6_mvitamin D inactive form serum level QTL 6 (mouse)987800000121800000Mouse
10412242Alpq8_malcohol preference QTL 8 (mouse)Not determined989284925123284925Mouse
1301649Psl1_mpromotion susceptibility QTL 1 (mouse)Not determined989412277123412396Mouse
18182932Metl3_mmetabolite locus 3, N-acetylglutamate (mouse)989563342123563342Mouse
1357657Pymr_mPlasmodium yoelli malaria resistance (mouse)Not determined989977005118938021Mouse
12910770Splic1_mspleen iron content 1 (mouse)991413879124595110Mouse
12910772Lvic6_mliver iron content 6 (mouse)991413879124595110Mouse
12910773Splic3_mspleen iron content 3 (mouse)991413879124595110Mouse
1558767Skmw11_mskeletal muscle weight 11 (mouse)Not determined991641084124595110Mouse
13463474Hbbcq5_mhemoglobin concentration QTL 5 (mouse)991641084124595110Mouse
13463475Hctq7_mhematocrit QTL 7 (mouse)991641084124595110Mouse
13463477Rbc9_mred blood cell count 9 (mouse)991641084124595110Mouse
13463478Mchq18_mmean corpuscular hemoglobin QTL 18 (mouse)991641084124595110Mouse
13463480Mchcq2_mmean corpuscular hemoglobin concentration QTL 2 (mouse)991641084124595110Mouse
12904937Edlmmq9_mextensor digitorum longus muscle mass QTL 9 (mouse)991683173124595110Mouse
12904947Tammq7_mtibialis anterior muscle mass QTL 7 (mouse)991683173124595110Mouse
12904961Gmmq7_mgastrocnemius muscle mass QTL 7 (mouse)991683173124595110Mouse
1302001Bdln5_mbody length 5 (mouse)Not determined993762590124595110Mouse
1301484Bwq6_mbody weight (mouse)Not determined993762590124595110Mouse
14746992Manh67_mmandible shape 67 (mouse)994036768124595110Mouse
11081166Psl5_mpromotion susceptibility QTL 5 (mouse)994981301112872929Mouse
11537364Cnes5_mC. neoformans susceptibility locus 5 (mouse)996917590124595110Mouse
1301297Lcho1_mliver cholesterol 1 (mouse)Not determined9101060861124595110Mouse
1357627Tgq2_mtriglyceride QTL 2 (mouse)Not determined9102000187124595110Mouse
1357648Obq18_mobesity QTL 18 (mouse)Not determined9102000187124595110Mouse
1301789Pbwg4_mpostnatal body weight growth 4 (mouse)Not determined9103289445124595110Mouse
10412290Pvacm1l_mplasma vascular cell adhesion molecule 1 levels (mouse)Not determined9103289445124595110Mouse
12879896Berr3_mberghei resistance locus 3 (mouse)9103289445124595110Mouse
13515058Adip20d_madiposity 20d (mouse)9108915010118915010Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:195
Count of miRNA genes:183
Interacting mature miRNAs:191
Transcripts:ENSMUST00000177678
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000177678   ⟹   ENSMUSP00000136900
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9110,914,739 - 110,916,861 (-)Ensembl
RefSeq Acc Id: NM_001195437   ⟹   NP_001182366
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399110,743,444 - 110,745,966 (-)NCBI
GRCm389110,914,376 - 110,916,898 (-)NCBI
Celera9110,640,188 - 110,642,298 (-)ENTREZGENE
cM Map9 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_036154919   ⟹   XP_036010812
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399110,743,565 - 110,756,579 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001182366 (Get FASTA)   NCBI Sequence Viewer  
  XP_036010812 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_001182366   ⟸   NM_001195437
- UniProtKB: J3QNP9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000136900   ⟸   ENSMUST00000177678
RefSeq Acc Id: XP_036010812   ⟸   XM_036154919
- Peptide Label: isoform X1

Promoters
RGD ID:8671040
Promoter ID:EPDNEW_M13551
Type:single initiation site
Name:Fam240a_1
Description:Mus musculus family with sequence similarity 240 member A , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm389110,916,898 - 110,916,958EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2685436 AgrOrtholog
Ensembl Genes ENSMUSG00000096393 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000136900 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000177678 ENTREZGENE, UniProtKB/TrEMBL
InterPro FAM240 UniProtKB/TrEMBL
KEGG Report mmu:235634 UniProtKB/TrEMBL
MGD MGI:2685436 ENTREZGENE
NCBI Gene 235634 ENTREZGENE
PANTHER PTHR40387 UniProtKB/TrEMBL
PhenoGen Fam240a PhenoGen
UniGene Mm.31788 ENTREZGENE
UniProt J3QNP9 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-06-06 Fam240a  family with sequence similarity 240 member A  Gm590  predicted gene 590  Symbol and/or name change 5135510 APPROVED