Igk (immunoglobulin kappa chain complex) - Rat Genome Database
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Gene: Igk (immunoglobulin kappa chain complex) Mus musculus
Analyze
Symbol: Igk
Name: immunoglobulin kappa chain complex
RGD ID: 1621288
MGI Page MGI
Description: Summary:Immunoglobulins recognize foreign antigens and initiate immune responses such as phagocytosis and the complement system. Each immunoglobulin molecule consists of two identical heavy chains and two identical light chains. There are two classes of light chains, kappa and lambda. This region represents the germline organization of the kappa light chain locus from the C57BL/6J inbred mouse strain. The locus includes V (variable), J (joining), and C (constant) segments. During B cell development, a recombination event at the DNA level joins a single V segment with a J segment; the C segment is later joined by splicing at the RNA level. Recombination of many different V segments with several J segments provides a wide range of antigen recognition. Additional diversity is attained by junctional diversity, resulting from the random additional of nucleotides by terminal deoxynucleotidyltransferase, and by somatic hypermutation, which occurs during B cell maturation in the spleen and lymph nodes. Several V segments in this cluster are incapable of encoding a protein and are considered pseudogenes. [provided by RefSeq, Jul 2008]
Type: protein-coding
RefSeq Status: REVIEWED
Also known as: k; kappa; kappa light chain variable region; MGC102615; MGC150007; MGC28604; MGC41421; MGC6612
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39667,532,620 - 70,703,738 (+)NCBIGRCm39mm39
GRCm38667,555,636 - 70,726,754 (+)NCBIGRCm38GRCm38mm10GRCm38
MGSCv37667,505,630 - 70,676,748 (+)NCBIGRCm37mm9NCBIm37
MGSCv36667,505,630 - 70,676,748 (+)NCBImm8
Celera669,673,181 - 72,812,188 (+)NCBICelera
Cytogenetic Map6C1NCBI
cM Map630.89NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
abnormal B cell differentiation  (IAGP)
abnormal B cell physiology  (IAGP)
abnormal B cell selection  (IAGP)
abnormal CD4-positive, alpha beta T cell morphology  (IAGP)
abnormal class switch recombination  (IAGP)
abnormal DNA methylation  (IAGP)
abnormal glomerular mesangium morphology  (IAGP)
abnormal immature B cell morphology  (IAGP)
abnormal immune system physiology  (IAGP)
abnormal immunoglobulin level  (IAGP)
abnormal immunoglobulin light chain V-J recombination  (IAGP)
abnormal immunoglobulin V(D)J recombination  (IAGP)
abnormal lymph node morphology  (IAGP)
abnormal mature B cell morphology  (IAGP)
abnormal podocyte morphology  (IAGP)
abnormal pre-B cell morphology  (IAGP)
abnormal proximal convoluted tubule morphology  (IAGP)
abnormal somatic hypermutation frequency  (IAGP)
abnormal spleen morphology  (IAGP)
absent B cells  (IAGP)
absent pre-B cells  (IAGP)
arthritis  (IAGP)
decreased B cell number  (IAGP)
decreased blood uric acid level  (IAGP)
decreased circulating phosphate level  (IAGP)
decreased follicular B cell number  (IAGP)
decreased IgG level  (IEA)
decreased IgM level  (IAGP)
decreased immature B cell number  (IAGP)
decreased marginal zone B cell number  (IAGP)
decreased mature B cell number  (IAGP)
decreased pre-B cell number  (IAGP)
decreased pro-B cell number  (IAGP)
decreased susceptibility to autoimmune disorder  (IAGP)
decreased transitional stage T1 B cell number  (IAGP)
decreased transitional stage T2 B cell number  (IAGP)
expanded mesangial matrix  (IAGP)
glomerulonephritis  (IAGP)
increased B cell number  (IAGP)
increased B-1a cell number  (IAGP)
increased CD4-positive, alpha beta T cell number  (IAGP)
increased cellular sensitivity to ionizing radiation  (IAGP)
increased immature B cell number  (IAGP)
increased mesangial cell number  (IAGP)
increased pre-B cell number  (IAGP)
increased transitional stage B cell number  (IAGP)
increased urine phosphate level  (IAGP)
increased urine protein level  (IAGP)
increased urine uric acid level  (IAGP)
no abnormal phenotype detected  (IAGP)
podocyte foot process effacement  (IAGP)
proximal convoluted tubule brush border loss  (IAGP)
reduced male fertility  (IAGP)
spontaneous chromosome breakage  (IAGP)
References

References - curated
1. RGD automated import pipeline
2. RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:99815   PMID:100785   PMID:103625   PMID:111146   PMID:111241   PMID:115000   PMID:279004   PMID:1427923   PMID:1429727   PMID:1639403   PMID:1684952   PMID:1729611  
PMID:2109186   PMID:2505260   PMID:2563357   PMID:2567773   PMID:2574159   PMID:2675563   PMID:2710121   PMID:2767052   PMID:2995250   PMID:2998983   PMID:3003402   PMID:3104881  
PMID:3138286   PMID:3926938   PMID:3927151   PMID:3937724   PMID:6264318   PMID:6443559   PMID:6791832   PMID:6980942   PMID:7529553   PMID:7535094   PMID:7554465   PMID:7557392  
PMID:7629511   PMID:7758956   PMID:7759486   PMID:7796294   PMID:7873877   PMID:7963528   PMID:8027546   PMID:8034332   PMID:8100806   PMID:8112297   PMID:8122310   PMID:8309481  
PMID:8372513   PMID:8458340   PMID:8508766   PMID:8566019   PMID:8596914   PMID:8612132   PMID:8618913   PMID:8670229   PMID:8750831   PMID:8766569   PMID:8805643   PMID:8808057  
PMID:8808678   PMID:8808679   PMID:8822276   PMID:9046436   PMID:9316642   PMID:9430222   PMID:9545251   PMID:9558077   PMID:9655488   PMID:9712022   PMID:10224284   PMID:10421777  
PMID:10427979   PMID:10510080   PMID:10514009   PMID:10586092   PMID:10591178   PMID:10636478   PMID:10639146   PMID:10829061   PMID:10940920   PMID:10992488   PMID:11145660   PMID:11196134  
PMID:11257137   PMID:11536163   PMID:11751941   PMID:11869685   PMID:11872956   PMID:11920561   PMID:11932922   PMID:11970877   PMID:11970883   PMID:12080064   PMID:12119344   PMID:12119399  
PMID:12356741   PMID:12477932   PMID:12538695   PMID:12586350   PMID:12615002   PMID:12754269   PMID:12833571   PMID:14975236   PMID:15067064   PMID:15156139   PMID:15619624   PMID:15710909  
PMID:15738053   PMID:15752064   PMID:15972629   PMID:16054218   PMID:16109882   PMID:16177065   PMID:16210610   PMID:16493031   PMID:16543471   PMID:16618599   PMID:16709806   PMID:16860389  
PMID:16973388   PMID:17035062   PMID:17114443   PMID:17369193   PMID:17404261   PMID:17509908   PMID:17546032   PMID:17713479   PMID:17911612   PMID:18032373   PMID:18178822   PMID:18297074  
PMID:18316419   PMID:18322191   PMID:18339657   PMID:18354197   PMID:18453592   PMID:19116268   PMID:19450527   PMID:19467709   PMID:19503106   PMID:19710454   PMID:19822901   PMID:20038598  
PMID:20176802   PMID:20357261   PMID:20505143   PMID:20861359   PMID:21076060   PMID:21160472   PMID:21267068   PMID:21441452   PMID:21471456   PMID:21604259   PMID:21622866   PMID:22287713  
PMID:22323542   PMID:22355127   PMID:22927551   PMID:23023124   PMID:23296705   PMID:23382544   PMID:23508106   PMID:23749435   PMID:23940273   PMID:23940276   PMID:23997211   PMID:24058175  
PMID:24105635   PMID:24141948   PMID:24375379   PMID:24591372   PMID:24706724   PMID:24706856   PMID:24706858   PMID:24880458   PMID:24888587   PMID:25559567   PMID:26059604   PMID:26091035  
PMID:26146363   PMID:26167872   PMID:26258882   PMID:26301565   PMID:26608917   PMID:26666261   PMID:26944199   PMID:27428827   PMID:27924814   PMID:28099860   PMID:28727987   PMID:28755662  
PMID:29144460   PMID:29287996   PMID:29459677   PMID:29549115   PMID:30066671   PMID:30158115   PMID:30446568   PMID:30449725   PMID:30948496   PMID:31225793   PMID:31775046   PMID:31915305  


Genomics

Position Markers
RH127636  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38670,726,552 - 70,726,747UniSTSGRCm38
MGSCv37670,676,546 - 70,676,741UniSTSGRCm37
Celera672,811,986 - 72,812,181UniSTS
Cytogenetic Map6CUniSTS
Cytogenetic Map6C1UniSTS
cM Map630.0UniSTS
cM Map630.0UniSTS
cM Map630.0UniSTS
cM Map630.0UniSTS
cM Map630.0UniSTS
cM Map630.0UniSTS
Z72373  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38670,590,395 - 70,590,623UniSTSGRCm38
MGSCv37670,540,389 - 70,540,617UniSTSGRCm37
Celera672,680,051 - 72,680,279UniSTS
Cytogenetic Map6C1UniSTS
cM Map630.0UniSTS
Z72368  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38667,918,516 - 67,918,739UniSTSGRCm38
MGSCv37667,868,510 - 67,868,733UniSTSGRCm37
Celera670,036,514 - 70,036,737UniSTS
Cytogenetic Map6C1UniSTS
cM Map630.0UniSTS
Z72374  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38670,673,890 - 70,674,053UniSTSGRCm38
MGSCv37670,623,884 - 70,624,047UniSTSGRCm37
Celera672,759,167 - 72,759,330UniSTS
Cytogenetic Map6C1UniSTS
cM Map630.0UniSTS
AV061724  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38670,726,722 - 70,726,854UniSTSGRCm38
MGSCv37670,676,716 - 70,676,848UniSTSGRCm37
Celera672,812,156 - 72,812,288UniSTS
Cytogenetic Map6C1UniSTS
Cytogenetic Map6CUniSTS
cM Map630.0UniSTS
cM Map630.0UniSTS
cM Map630.0UniSTS
cM Map630.0UniSTS
cM Map630.0UniSTS
Whitehead/MRC_RH6704.46UniSTS
UniSTS:487865  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38668,631,950 - 68,632,430UniSTSGRCm38
GRCm38668,680,379 - 68,680,860UniSTSGRCm38
MGSCv37668,581,944 - 68,582,424UniSTSGRCm37
MGSCv37668,630,373 - 68,630,854UniSTSGRCm37
Celera670,788,476 - 70,788,957UniSTS
Celera670,740,734 - 70,741,214UniSTS
Cytogenetic Map6C1UniSTS
cM Map630.0UniSTS
46.MHAa56h10.seq  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38761,906,992 - 61,907,103UniSTSGRCm38
GRCm38667,818,732 - 67,818,842UniSTSGRCm38
MGSCv37667,768,726 - 67,768,836UniSTSGRCm37
MGSCv37769,051,878 - 69,051,989UniSTSGRCm37
Celera758,112,350 - 58,112,461UniSTS
Celera669,937,269 - 69,937,379UniSTS
Cytogenetic Map7B5UniSTS
Cytogenetic Map6C1UniSTS
cM Map630.0UniSTS
Whitehead_YAC4 UniSTS
D4Mit285  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38668,319,966 - 68,320,054UniSTSGRCm38
GRCm384147,441,271 - 147,441,370UniSTSGRCm38
MGSCv374146,815,380 - 146,815,479UniSTSGRCm37
MGSCv37668,269,960 - 68,270,048UniSTSGRCm37
Celera670,430,829 - 70,430,917UniSTS
Celera4147,964,692 - 147,964,791UniSTS
Cytogenetic Map6C1UniSTS
Cytogenetic Map4E1UniSTS
cM Map471.0UniSTS
Whitehead Genetic471.0UniSTS
Whitehead_YAC4 UniSTS
D6Mit279  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38668,148,517 - 68,148,628UniSTSGRCm38
MGSCv37668,098,511 - 68,098,622UniSTSGRCm37
Celera670,262,064 - 70,262,175UniSTS
Cytogenetic Map6C1UniSTS
cM Map630.3UniSTS
Whitehead Genetic619.7UniSTS
Whitehead_YAC6 UniSTS
D6Mit96  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38670,075,269 - 70,075,371UniSTSGRCm38
MGSCv37670,025,263 - 70,025,365UniSTSGRCm37
Celera672,173,690 - 72,173,792UniSTS
Cytogenetic Map6C1UniSTS
cM Map630.2UniSTS
Whitehead Genetic619.7UniSTS
D6Mit97  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38668,179,150 - 68,179,300UniSTSGRCm38
MGSCv37668,129,144 - 68,129,294UniSTSGRCm37
Celera670,292,711 - 70,292,861UniSTS
Cytogenetic Map6C1UniSTS
cM Map630.2UniSTS
Whitehead Genetic619.7UniSTS
Whitehead_YAC6 UniSTS
Z72362  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38667,572,372 - 67,572,567UniSTSGRCm38
MGSCv37667,522,366 - 67,522,561UniSTSGRCm37
Celera669,689,782 - 69,689,977UniSTS
Cytogenetic Map6C1UniSTS
cM Map630.0UniSTS
D6Dcr15  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38668,390,833 - 68,390,934UniSTSGRCm38
MGSCv37668,340,827 - 68,340,928UniSTSGRCm37
Celera670,500,570 - 70,500,671UniSTS
Cytogenetic Map6C1UniSTS
cM Map6 UniSTS
D6Dcr16  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38668,458,847 - 68,458,945UniSTSGRCm38
MGSCv37668,408,841 - 68,408,939UniSTSGRCm37
Celera670,568,483 - 70,568,581UniSTS
Cytogenetic Map6C1UniSTS
cM Map6 UniSTS
UniSTS:235464  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38668,101,535 - 68,101,791UniSTSGRCm38
MGSCv37668,051,529 - 68,051,785UniSTSGRCm37
Celera670,219,482 - 70,219,738UniSTS
Cytogenetic Map6C1UniSTS
cM Map630.0UniSTS
UniSTS:237935  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38670,713,090 - 70,713,299UniSTSGRCm38
GRCm381938,902,718 - 38,902,927UniSTSGRCm38
MGSCv37670,663,084 - 70,663,293UniSTSGRCm37
MGSCv371938,977,208 - 38,977,417UniSTSGRCm37
Celera1939,704,252 - 39,704,461UniSTS
Celera672,798,520 - 72,798,729UniSTS
Cytogenetic Map19C3UniSTS
Cytogenetic Map6C1UniSTS
cM Map630.0UniSTS
PMC125515P1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38670,722,702 - 70,722,778UniSTSGRCm38
MGSCv37670,672,696 - 70,672,772UniSTSGRCm37
Celera672,808,132 - 72,808,208UniSTS
Cytogenetic Map6CUniSTS
Cytogenetic Map6C1UniSTS
cM Map630.0UniSTS
cM Map630.0UniSTS
cM Map630.0UniSTS
cM Map630.0UniSTS
cM Map630.0UniSTS
cM Map630.0UniSTS
PMC129040P1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38670,723,430 - 70,723,635UniSTSGRCm38
MGSCv37670,673,424 - 70,673,629UniSTSGRCm37
Celera672,808,860 - 72,809,065UniSTS
Cytogenetic Map6C1UniSTS
Cytogenetic Map6CUniSTS
cM Map630.0UniSTS
cM Map630.0UniSTS
cM Map630.0UniSTS
cM Map630.0UniSTS
D6Ertd456e  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38643,081,164 - 43,081,402UniSTSGRCm38
GRCm38667,556,332 - 67,556,566UniSTSGRCm38
MGSCv37643,031,163 - 43,031,401UniSTSGRCm37
MGSCv37667,506,326 - 67,506,560UniSTSGRCm37
Celera643,028,691 - 43,028,929UniSTS
Celera669,673,877 - 69,674,111UniSTS
Cytogenetic Map6C1UniSTS
cM Map631.5UniSTS
Z72365  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38667,754,609 - 67,754,739UniSTSGRCm38
MGSCv37667,704,603 - 67,704,733UniSTSGRCm37
Celera669,873,012 - 69,873,142UniSTS
Cytogenetic Map6C1UniSTS
cM Map630.0UniSTS
Z72372  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38670,107,986 - 70,108,255UniSTSGRCm38
GRCm38670,299,693 - 70,299,960UniSTSGRCm38
MGSCv37670,057,980 - 70,058,249UniSTSGRCm37
MGSCv37670,249,687 - 70,249,954UniSTSGRCm37
Celera672,390,890 - 72,391,157UniSTS
Celera672,206,396 - 72,206,665UniSTS
Cytogenetic Map6C1UniSTS
cM Map630.0UniSTS
Z72366  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38667,776,227 - 67,776,369UniSTSGRCm38
MGSCv37667,726,221 - 67,726,363UniSTSGRCm37
Celera669,894,635 - 69,894,777UniSTS
Cytogenetic Map6C1UniSTS
cM Map630.0UniSTS
Z72364  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38667,696,134 - 67,696,347UniSTSGRCm38
GRCm38Un12,507 - 12,720UniSTSGRCm38
MGSCv37Un12,507 - 12,720UniSTSGRCm37
MGSCv37667,646,128 - 67,646,341UniSTSGRCm37
Celera669,814,535 - 69,814,748UniSTS
Cytogenetic Map6C1UniSTS
cM Map630.0UniSTS
Z72370  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38670,024,725 - 70,024,820UniSTSGRCm38
MGSCv37669,974,719 - 69,974,814UniSTSGRCm37
Celera672,123,029 - 72,123,124UniSTS
Cytogenetic Map6C1UniSTS
cM Map630.0UniSTS
Z72369  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38669,882,050 - 69,882,231UniSTSGRCm38
MGSCv37669,832,044 - 69,832,225UniSTSGRCm37
Celera671,980,767 - 71,980,948UniSTS
Cytogenetic Map6C1UniSTS
cM Map630.0UniSTS
PMC316908P1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38670,723,288 - 70,723,753UniSTSGRCm38
MGSCv37670,673,282 - 70,673,747UniSTSGRCm37
Celera672,808,718 - 72,809,183UniSTS
Cytogenetic Map6C1UniSTS
Cytogenetic Map6CUniSTS
cM Map630.0UniSTS
cM Map630.0UniSTS
cM Map630.0UniSTS
cM Map630.0UniSTS
PMC316908P2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38670,723,440 - 70,723,710UniSTSGRCm38
MGSCv37670,673,434 - 70,673,704UniSTSGRCm37
Celera672,808,870 - 72,809,140UniSTS
Cytogenetic Map6C1UniSTS
Cytogenetic Map6CUniSTS
cM Map630.0UniSTS
cM Map630.0UniSTS
cM Map630.0UniSTS
cM Map630.0UniSTS
Igk  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38669,857,955 - 69,858,120UniSTSGRCm38
MGSCv37669,807,949 - 69,808,114UniSTSGRCm37
Celera671,956,757 - 71,956,922UniSTS
Cytogenetic Map6C1UniSTS
cM Map630.0UniSTS
Igk-C  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38670,726,339 - 70,726,810UniSTSGRCm38
MGSCv37670,676,333 - 70,676,804UniSTSGRCm37
Celera672,811,773 - 72,812,244UniSTS
Cytogenetic Map6C1UniSTS
Cytogenetic Map6CUniSTS
cM Map632.04UniSTS
cM Map630.0UniSTS
Igk-C  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38670,724,194 - 70,724,693UniSTSGRCm38
MGSCv37670,674,188 - 70,674,687UniSTSGRCm37
Celera672,809,624 - 72,810,125UniSTS
Cytogenetic Map6CUniSTS
Cytogenetic Map6C1UniSTS
cM Map630.0UniSTS
Igk-V1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38668,121,097 - 68,121,711UniSTSGRCm38
GRCm38668,270,533 - 68,271,151UniSTSGRCm38
MGSCv37668,071,091 - 68,071,705UniSTSGRCm37
MGSCv37668,220,527 - 68,221,145UniSTSGRCm37
Celera670,383,086 - 70,383,704UniSTS
Celera670,238,902 - 70,239,516UniSTS
Cytogenetic Map6C1UniSTS
cM Map630.0UniSTS
cM Map630.0UniSTS
cM Map630.0UniSTS
Igk-V12/13  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38669,858,422 - 69,858,863UniSTSGRCm38
MGSCv37669,808,416 - 69,808,857UniSTSGRCm37
Celera671,957,224 - 71,957,665UniSTS
Cytogenetic Map6C1UniSTS
cM Map630.0UniSTS
Igk-V10  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38668,631,966 - 68,632,180UniSTSGRCm38
MGSCv37668,581,960 - 68,582,174UniSTSGRCm37
Celera670,740,750 - 70,740,964UniSTS
Cytogenetic Map6C1UniSTS
cM Map630.0UniSTS
Igk-V19  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38670,434,956 - 70,435,166UniSTSGRCm38
MGSCv37670,384,950 - 70,385,160UniSTSGRCm37
Celera672,525,898 - 72,526,108UniSTS
Cytogenetic Map6C1UniSTS
cM Map630.0UniSTS
Igk-V20  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38668,036,849 - 68,037,315UniSTSGRCm38
MGSCv37667,986,843 - 67,987,309UniSTSGRCm37
Celera670,154,810 - 70,155,276UniSTS
Cytogenetic Map6C1UniSTS
cM Map630.0UniSTS
Igk-C  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38670,726,637 - 70,726,815UniSTSGRCm38
MGSCv37670,676,631 - 70,676,809UniSTSGRCm37
Celera672,812,071 - 72,812,249UniSTS
Cytogenetic Map6C1UniSTS
Cytogenetic Map6CUniSTS
cM Map630.0UniSTS
Igk-V21  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38670,686,974 - 70,687,414UniSTSGRCm38
MGSCv37670,636,968 - 70,637,408UniSTSGRCm37
Celera672,772,196 - 72,772,636UniSTS
Cytogenetic Map6C1UniSTS
cM Map630.0UniSTS
Igk-V28  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38670,074,027 - 70,074,584UniSTSGRCm38
MGSCv37670,024,021 - 70,024,578UniSTSGRCm37
Celera672,172,448 - 72,173,005UniSTS
Cytogenetic Map6C1UniSTS
cM Map630.0UniSTS
Igk-V24  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38668,219,923 - 68,220,706UniSTSGRCm38
MGSCv37668,169,917 - 68,170,700UniSTSGRCm37
Celera670,333,335 - 70,334,118UniSTS
Cytogenetic Map6C1UniSTS
cM Map630.0UniSTS
Igk-V23  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38669,900,423 - 69,900,638UniSTSGRCm38
MGSCv37669,850,417 - 69,850,632UniSTSGRCm37
Celera671,999,142 - 71,999,357UniSTS
Cytogenetic Map6C1UniSTS
cM Map631.63UniSTS
cM Map630.0UniSTS
Igk-V34  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38668,930,268 - 68,930,726UniSTSGRCm38
MGSCv37668,880,262 - 68,880,720UniSTSGRCm37
Celera671,038,225 - 71,038,683UniSTS
Cytogenetic Map6C1UniSTS
cM Map630.0UniSTS
Igk-V9  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38668,050,004 - 68,050,274UniSTSGRCm38
MGSCv37667,999,998 - 68,000,268UniSTSGRCm37
Celera670,167,969 - 70,168,239UniSTS
Cytogenetic Map6C1UniSTS
cM Map630.0UniSTS
Z72367  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38667,781,360 - 67,781,599UniSTSGRCm38
MGSCv37667,731,354 - 67,731,593UniSTSGRCm37
Celera669,899,768 - 69,900,007UniSTS
Cytogenetic Map6C1UniSTS
cM Map630.0UniSTS
UniSTS:489614  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38668,270,485 - 68,271,382UniSTSGRCm38
GRCm38668,121,049 - 68,121,942UniSTSGRCm38
MGSCv37668,071,043 - 68,071,936UniSTSGRCm37
MGSCv37668,220,479 - 68,221,376UniSTSGRCm37
Celera670,383,038 - 70,383,935UniSTS
Celera670,238,854 - 70,239,747UniSTS
Cytogenetic Map6C1UniSTS
cM Map630.0UniSTS
cM Map630.0UniSTS
cM Map630.0UniSTS
A004F15  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38667,762,418 - 67,763,342UniSTSGRCm38
MGSCv37667,712,412 - 67,713,336UniSTSGRCm37
Celera669,880,821 - 69,881,745UniSTS
Cytogenetic Map6C1UniSTS
cM Map630.0UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
25440480Moaq2_mmodifier of alien QTL 2 (mouse)61117500000Mouse
26884414Bzwq12_mbi-zygomatic width QTL 12, 16 week (mouse)63400000139100000Mouse
1300556Cia6_mcollagen induced arthritis QTL 6 (mouse)Not determined6446488487426034Mouse
4142126W3q3_mweight 3 weeks QTL 3 (mouse)Not determined450382396656149Mouse
4142361W10q11_mweight 10 weeks QTL 11 (mouse)Not determined450382396656149Mouse
4142271Egq8_mearly growth QTL 8 (mouse)Not determined450382396656149Mouse
4142232W6q4_mweight 6 weeks QTL 4 (mouse)Not determined450382396656149Mouse
26884441Sklq3_mskull length QTL 3, 5 week (mouse)6760000080600000Mouse
1357442Dbts1_mdiabetes 1 (mouse)Not determined61823414873387692Mouse
10412213Sxbq2_mSGC/Knj cross B6 QTL 2 (mouse)Not determined61991268671322775Mouse
13208564Bmiq7_mbody mass index QTL 7 (mouse)62500000080000000Mouse
4141782Mrdq5_mmodifier of retinal degeneration QTL 5 (mouse)Not determined3285065078238974Mouse
1300959Lxw2_mlupus BXSB x NZW 2 (mouse)Not determined63389528167895420Mouse
11252142Mom12_mModifier of Min 12 (mouse)63389528167895420Mouse
1300767Aliq4_macute lung injury QTL 4 (mouse)Not determined63629634770296450Mouse
1357539Bsbob3_mBSB obesity 3 (mouse)Not determined63647147170471591Mouse
4141094Hrtr1_mheart rate 1 (mouse)Not determined3676447870764478Mouse
14746995Manh60_mmandible shape 60 (mouse)63722567771225677Mouse
1558984Cplaq9_mcircadian period of locomotor activity 9 (mouse)Not determined63866962592607450Mouse
1301326Trbv4c2_mT cell receptor beta variable 4 (mouse)Not determined64089129671379171Mouse
12880424V25Dq4_mvitamin D inactive form serum level QTL 4 (mouse)64160000075600000Mouse
1301266Lmr4_mleishmaniasis resistance 4 (mouse)Not determined64211637376116515Mouse
11040600Lmr4c_mleishmaniasis resistance 4c (mouse)64211637376116515Mouse
11040601Lmr4a_mleishmaniasis resistance 4a (mouse)64211637376116515Mouse
11533915Mts4_mmammary tumor susceptibility 4 (mouse)64211637376116515Mouse
12910785Pwgrq16_mpost-weaning growth rate QTL 16 (mouse)64382681377811523Mouse
12910798Pwgrq5_mpre-weaning growth rate QTL 5 (mouse)64382681377811523Mouse
12910802Pwbwq12_mpost-weaning body weight QTL 12 (mouse)64382681377811523Mouse
12910807Pwbwq11_mpost-weaning body weight QTL 11 (mouse)64382681377811523Mouse
12910809Pwbwq10_mpost-weaning body weight QTL 10 (mouse)64382681377811523Mouse
12910820Ogrq3_moverall growth rate QTL 3 (mouse)64382681377811523Mouse
10043885Cia6c_mcollagen induced arthritis QTL 6c (mouse)Not determined64446587171119467Mouse
1300618Pgia19_mproteoglycan induced arthritis 19 (mouse)Not determined64531405987426034Mouse
10412157Fl1n_mfatty liver 1 in NSY (mouse)Not determined645314059128835032Mouse
4142259Tabw2_mtally ho associated body weight 2 (mouse)Not determined46935985136423692Mouse
25314319Histh6_mhistamine hypersensitivity 6 (mouse)648720000125360000Mouse
25314320Histh5_mhistamine hypersensitivity 5 (mouse)648720000148450000Mouse
4140983Srilp_msleep response to influenza, light phase (mouse)Not determined4872655675447710Mouse
1301962Eila2_methanol induced locomotor activity 2 (mouse)Not determined648726556125356785Mouse
1301254Skts11_mskin tumor susceptibility 11 (mouse)Not determined65117915085179300Mouse
1357683Igf1sl1_mIGF-1 serum levels 1 (mouse)Not determined652161713116155267Mouse
4141028Mclr_mmethylcholanthrene lymphoma resistance (mouse)Not determined5437342788379171Mouse
15039373Adip28_madiposity 28 (mouse)65630821190308211Mouse
15039375Bw41_mbody weight QTL 41 (mouse)65630821190308211Mouse
1558977Skmw10_mskeletal muscle weight 10 (mouse)Not determined65844758392447710Mouse
10043972Obq28_mobesity QTL 28 (mouse)Not determined65854043392540433Mouse
1301740Bwq2_mbody weight QTL 2 (mouse)Not determined66005768094057799Mouse
1301369Im4_mimmunoregulatory 4 (mouse)Not determined66348473897484905Mouse
1300650Bw18_mbody weight QTL 18 (mouse)Not determined666713869100714031Mouse
1301876Bits2_mbitterness sensitivity 2 (mouse)Not determined670425898104426034Mouse
1301813Skl3_mskeletal size (tail length) 3 (mouse)Not determined670425898104426034Mouse
1301034Egrm2_mearly growth rate (mouse)Not determined670425898104426034Mouse


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NG_005612 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC113030 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC120404 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC122260 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC122322 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC122814 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC122918 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC124758 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC140374 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC140385 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC153612 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC153614 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC153615 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC153855 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC153928 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC154006 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC155332 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC155333 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC155844 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC156284 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC156285 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC156953 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC158649 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC158672 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC158673 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC159715 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC171501 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC174597 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC174866 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AEKQ02072959 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ880391 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Protein Sequences
GenBank Protein CAI54295 (Get FASTA)   NCBI Sequence Viewer  
Protein Domains
Ig-like


Additional Information

Database Acc Id Source(s)
Gene3D-CATH 2.60.40.10 UniProtKB/TrEMBL
InterPro Ig-like UniProtKB/TrEMBL
  Ig-like_dom_sf UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
  Ig/MHC_CS UniProtKB/TrEMBL
  Ig_C1-set UniProtKB/TrEMBL
  Ig_sub UniProtKB/TrEMBL
  Ig_sub2 UniProtKB/TrEMBL
  Ig_V-set UniProtKB/TrEMBL
MGD MGI:96494 ENTREZGENE
NCBI Gene 243469 ENTREZGENE
Pfam C1-set UniProtKB/TrEMBL
  V-set UniProtKB/TrEMBL
PhenoGen Igk PhenoGen
PROSITE IG_LIKE UniProtKB/TrEMBL
  IG_MHC UniProtKB/TrEMBL
SMART IGc1 UniProtKB/TrEMBL
  IGc2 UniProtKB/TrEMBL
  IGv UniProtKB/TrEMBL
  SM00409 UniProtKB/TrEMBL
Superfamily-SCOP SSF48726 UniProtKB/TrEMBL
UniProt A0A0F7W6M8_MOUSE UniProtKB/TrEMBL
  A0A125T904_MOUSE UniProtKB/TrEMBL
  A0A125T906_MOUSE UniProtKB/TrEMBL
  A0A125T908_MOUSE UniProtKB/TrEMBL
  I6L958_MOUSE UniProtKB/TrEMBL
  I6L978_MOUSE UniProtKB/TrEMBL
  Q52L95_MOUSE UniProtKB/TrEMBL
  Q58EU8_MOUSE UniProtKB/TrEMBL
  Q5F2I7_MOUSE UniProtKB/TrEMBL