Lrrtm4 (leucine rich repeat transmembrane neuronal 4) - Rat Genome Database
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Gene: Lrrtm4 (leucine rich repeat transmembrane neuronal 4) Mus musculus
Analyze
Symbol: Lrrtm4
Name: leucine rich repeat transmembrane neuronal 4
RGD ID: 1621287
MGI Page MGI
Description: Is expressed in several structures, including central nervous system; embryo mesenchyme; and future midbrain. Orthologous to human LRRTM4 (leucine rich repeat transmembrane neuronal 4); INTERACTS WITH benzo[a]pyrene; ethanol; valproic acid.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: 7530419J18Rik; A230052N11; leucine-rich repeat transmembrane neuronal 4 protein; leucine-rich repeat transmembrane neuronal protein 4
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39679,995,828 - 80,787,143 (+)NCBIGRCm39mm39
GRCm39 Ensembl679,995,860 - 80,787,124 (+)Ensembl
GRCm38680,018,858 - 80,810,162 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl680,018,877 - 80,810,143 (+)EnsemblGRCm38mm10GRCm38
MGSCv37679,968,871 - 79,974,926 (+)NCBIGRCm37mm9NCBIm37
MGSCv36679,948,557 - 79,955,418 (+)NCBImm8
Celera682,022,464 - 82,028,524 (+)NCBICelera
Cytogenetic Map6C3NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View
References

Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:12676565   PMID:15489334   PMID:16141072   PMID:16141073   PMID:16860615   PMID:17273929  
PMID:20562862   PMID:21267068   PMID:21873635   PMID:22632720   PMID:23911103   PMID:23911104   PMID:24613359   PMID:26776509   PMID:31974009   PMID:31995730  


Genomics

Comparative Map Data
Lrrtm4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39679,995,828 - 80,787,143 (+)NCBIGRCm39mm39
GRCm39 Ensembl679,995,860 - 80,787,124 (+)Ensembl
GRCm38680,018,858 - 80,810,162 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl680,018,877 - 80,810,143 (+)EnsemblGRCm38mm10GRCm38
MGSCv37679,968,871 - 79,974,926 (+)NCBIGRCm37mm9NCBIm37
MGSCv36679,948,557 - 79,955,418 (+)NCBImm8
Celera682,022,464 - 82,028,524 (+)NCBICelera
Cytogenetic Map6C3NCBI
LRRTM4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl276,747,719 - 77,593,319 (-)EnsemblGRCh38hg38GRCh38
GRCh38.p13 Ensembl276,747,685 - 77,593,319 (-)EnsemblGRCh38hg38GRCh38
GRCh38276,747,685 - 77,522,376 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37276,974,811 - 77,749,502 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36277,597,295 - 77,603,010 (-)NCBINCBI36hg18NCBI36
Build 34277,655,448 - 77,661,157NCBI
Celera276,805,254 - 77,579,821 (-)NCBI
Cytogenetic Map2p12NCBI
HuRef276,709,976 - 77,484,740 (-)NCBIHuRef
CHM1_1276,904,205 - 77,678,822 (-)NCBICHM1_1
Lrrtm4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.24112,545,874 - 113,338,713 (+)NCBI
Rnor_6.0 Ensembl4110,699,557 - 111,497,643 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.04110,699,577 - 111,497,643 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.04175,389,206 - 176,188,408 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44114,142,055 - 114,940,958 (+)NCBIRGSC3.4rn4RGSC3.4
Celera4101,556,445 - 102,345,352 (+)NCBICelera
Cytogenetic Map4q34NCBI
Lrrtm4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554248,606,089 - 9,276,104 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554248,606,660 - 9,277,125 (+)NCBIChiLan1.0ChiLan1.0
LRRTM4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.12A78,333,473 - 79,183,332 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A79,123,161 - 79,183,506 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v02A76,830,224 - 77,616,298 (-)NCBIMhudiblu_PPA_v0panPan3
LRRTM4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl1746,090,978 - 46,796,020 (+)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.11746,091,140 - 46,797,107 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Lrrtm4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049365562,760,294 - 3,493,517 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LRRTM4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl366,128,689 - 66,884,740 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1366,128,650 - 66,884,916 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2369,438,923 - 70,171,188 (+)NCBISscrofa10.2Sscrofa10.2susScr3
LRRTM4
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11429,751,187 - 30,505,542 (+)NCBI
Lrrtm4
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462474925,669,342 - 26,445,401 (+)NCBI


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
25440480Moaq2_mmodifier of alien QTL 2 (mouse)61117500000Mouse
26884414Bzwq12_mbi-zygomatic width QTL 12, 16 week (mouse)63400000139100000Mouse
1300556Cia6_mcollagen induced arthritis QTL 6 (mouse)Not determined6446488487426034Mouse
4142126W3q3_mweight 3 weeks QTL 3 (mouse)Not determined450382396656149Mouse
4142361W10q11_mweight 10 weeks QTL 11 (mouse)Not determined450382396656149Mouse
4142271Egq8_mearly growth QTL 8 (mouse)Not determined450382396656149Mouse
4142232W6q4_mweight 6 weeks QTL 4 (mouse)Not determined450382396656149Mouse
26884441Sklq3_mskull length QTL 3, 5 week (mouse)6760000080600000Mouse
1558984Cplaq9_mcircadian period of locomotor activity 9 (mouse)Not determined63866962592607450Mouse
1300618Pgia19_mproteoglycan induced arthritis 19 (mouse)Not determined64531405987426034Mouse
10412157Fl1n_mfatty liver 1 in NSY (mouse)Not determined645314059128835032Mouse
4142259Tabw2_mtally ho associated body weight 2 (mouse)Not determined46935985136423692Mouse
25314319Histh6_mhistamine hypersensitivity 6 (mouse)648720000125360000Mouse
25314320Histh5_mhistamine hypersensitivity 5 (mouse)648720000148450000Mouse
1301962Eila2_methanol induced locomotor activity 2 (mouse)Not determined648726556125356785Mouse
1301254Skts11_mskin tumor susceptibility 11 (mouse)Not determined65117915085179300Mouse
1357683Igf1sl1_mIGF-1 serum levels 1 (mouse)Not determined652161713116155267Mouse
4141028Mclr_mmethylcholanthrene lymphoma resistance (mouse)Not determined5437342788379171Mouse
15039373Adip28_madiposity 28 (mouse)65630821190308211Mouse
15039375Bw41_mbody weight QTL 41 (mouse)65630821190308211Mouse
1558977Skmw10_mskeletal muscle weight 10 (mouse)Not determined65844758392447710Mouse
10043972Obq28_mobesity QTL 28 (mouse)Not determined65854043392540433Mouse
1301740Bwq2_mbody weight QTL 2 (mouse)Not determined66005768094057799Mouse
1301369Im4_mimmunoregulatory 4 (mouse)Not determined66348473897484905Mouse
1300650Bw18_mbody weight QTL 18 (mouse)Not determined666713869100714031Mouse
1301876Bits2_mbitterness sensitivity 2 (mouse)Not determined670425898104426034Mouse
1301813Skl3_mskeletal size (tail length) 3 (mouse)Not determined670425898104426034Mouse
1301034Egrm2_mearly growth rate (mouse)Not determined670425898104426034Mouse
4141990Etax6_methanol induced ataxia 6 (mouse)Not determined7132262186275719Mouse
1302020Bbaa20_mB.burgdorferi-associated arthritis 20 (mouse)Not determined67132262193464093Mouse
1300869Stheal5_msoft tissue heal 5 (mouse)Not determined671575060105575178Mouse
1300954Fcsa1_mfemoral cross-sectional area 1 (mouse)Not determined671981024105981170Mouse
1301521Pas1c_mpulmonary adenoma susceptibility 1c (mouse)Not determined671981024105981170Mouse
13506930Recrq9_mrecombination rate in male meiosis QTL 9 (mouse)673500000134700000Mouse
1301320Ots1_movarian teratoma susceptibility 1 (mouse)Not determined675447583104503555Mouse
1301571Arrd1_mage-related retinal degeneration 1 (mouse)Not determined67554435692607450Mouse
1300674Nidd3n_mnon-insulin-dependent diabetes mellitus 3 in NSY (mouse)Not determined67554435694225955Mouse
10412195Efw_mepididymal fat weight (mouse)Not determined67554435694225955Mouse
10043901Pfat5_mpredicted fat percentage 5 (mouse)Not determined675607306109607450Mouse
10412208Cypr4_mcytokine production 4 (mouse)Not determined675716503109716697Mouse
1357875Pfat2_mpredicted fat percentage 2 (mouse)Not determined676463949110464093Mouse
14697704Stsl4_mSalmonella typhimurium susceptibility locus 4 (mouse)67710000090000000Mouse
13824985Alh1_mamplitude of lateral head displacement 1 (mouse)67800000097000000Mouse
4141376Dbm1_mdiabetes modifier 1 (mouse)Not determined678629504121115387Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:4198
Count of miRNA genes:816
Interacting mature miRNAs:1093
Transcripts:ENSMUST00000074662, ENSMUST00000126005, ENSMUST00000126399, ENSMUST00000128718, ENSMUST00000133918, ENSMUST00000136421, ENSMUST00000145407, ENSMUST00000147663
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001134743 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001282102 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001347261 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_178731 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006506085 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006506086 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006506087 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006506088 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006506089 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011241336 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036166111 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC113206 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC153827 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC153839 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC153993 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC153996 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC156282 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC157023 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AEKQ02087723 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK032470 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK038656 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY182031 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC037216 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY130176 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466523 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CJ059997 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000074662   ⟹   ENSMUSP00000074232
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl680,019,643 - 80,024,932 (+)Ensembl
RefSeq Acc Id: ENSMUST00000126005   ⟹   ENSMUSP00000117445
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl680,018,918 - 80,024,924 (+)Ensembl
RefSeq Acc Id: ENSMUST00000126399   ⟹   ENSMUSP00000121124
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl680,019,011 - 80,810,141 (+)Ensembl
RefSeq Acc Id: ENSMUST00000128718   ⟹   ENSMUSP00000114425
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl680,018,888 - 80,021,756 (+)Ensembl
RefSeq Acc Id: ENSMUST00000133918   ⟹   ENSMUSP00000115016
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl680,018,918 - 80,809,323 (+)Ensembl
RefSeq Acc Id: ENSMUST00000136421   ⟹   ENSMUSP00000121621
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl680,019,048 - 80,025,909 (+)Ensembl
RefSeq Acc Id: ENSMUST00000145407   ⟹   ENSMUSP00000114465
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl680,019,342 - 80,021,923 (+)Ensembl
RefSeq Acc Id: ENSMUST00000147663   ⟹   ENSMUSP00000117263
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl680,018,877 - 80,810,143 (+)Ensembl
RefSeq Acc Id: NM_001134743   ⟹   NP_001128215
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39679,995,860 - 80,787,124 (+)NCBI
GRCm38680,018,877 - 80,810,143 (+)NCBI
Celera682,022,464 - 82,815,319 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001282102   ⟹   NP_001269031
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39679,995,860 - 80,001,915 (+)NCBI
GRCm38680,018,877 - 80,024,932 (+)NCBI
Celera682,022,464 - 82,815,319 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001347261   ⟹   NP_001334190
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39679,996,626 - 80,787,124 (+)NCBI
GRCm38680,019,643 - 80,810,143 (+)NCBI
Sequence:
RefSeq Acc Id: NM_178731   ⟹   NP_848846
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39679,996,626 - 80,001,915 (+)NCBI
GRCm38680,019,643 - 80,024,932 (+)NCBI
MGSCv37679,968,871 - 79,974,926 (+)RGD
Celera682,022,464 - 82,815,319 (+)NCBI
cM Map6 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006506085   ⟹   XP_006506148
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39679,995,842 - 80,787,143 (+)NCBI
GRCm38680,018,858 - 80,810,162 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006506086   ⟹   XP_006506149
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39679,995,842 - 80,787,143 (+)NCBI
GRCm38680,018,858 - 80,810,162 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006506087   ⟹   XP_006506150
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39679,995,841 - 80,787,143 (+)NCBI
GRCm38680,018,858 - 80,810,162 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006506088   ⟹   XP_006506151
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39679,995,828 - 80,787,143 (+)NCBI
GRCm38680,018,859 - 80,809,050 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006506089   ⟹   XP_006506152
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39679,995,828 - 80,787,143 (+)NCBI
GRCm38680,018,860 - 80,809,039 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011241336   ⟹   XP_011239638
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39679,995,828 - 80,643,379 (+)NCBI
GRCm38680,018,860 - 80,666,417 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036166111   ⟹   XP_036022004
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39679,995,828 - 80,203,323 (+)NCBI
Reference Sequences
RefSeq Acc Id: NP_848846   ⟸   NM_178731
- Peptide Label: isoform 1 precursor
- UniProtKB: Q80XG9 (UniProtKB/Swiss-Prot),   Q8BYQ8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001128215   ⟸   NM_001134743
- Peptide Label: isoform 3 precursor
- UniProtKB: Q80XG9 (UniProtKB/Swiss-Prot),   A0A0R4J1T4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001269031   ⟸   NM_001282102
- Peptide Label: isoform 2 precursor
- UniProtKB: E9Q8Y9 (UniProtKB/TrEMBL),   Q8BYQ8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006506148   ⟸   XM_006506085
- Peptide Label: isoform X1
- UniProtKB: Q80XG9 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006506149   ⟸   XM_006506086
- Peptide Label: isoform X1
- UniProtKB: Q80XG9 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006506150   ⟸   XM_006506087
- Peptide Label: isoform X1
- UniProtKB: Q80XG9 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006506151   ⟸   XM_006506088
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_006506152   ⟸   XM_006506089
- Peptide Label: isoform X4
- UniProtKB: E9Q8Y9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011239638   ⟸   XM_011241336
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: NP_001334190   ⟸   NM_001347261
- Peptide Label: isoform 4 precursor
- UniProtKB: Q80XG9 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: ENSMUSP00000114465   ⟸   ENSMUST00000145407
RefSeq Acc Id: ENSMUSP00000074232   ⟸   ENSMUST00000074662
RefSeq Acc Id: ENSMUSP00000117263   ⟸   ENSMUST00000147663
RefSeq Acc Id: ENSMUSP00000117445   ⟸   ENSMUST00000126005
RefSeq Acc Id: ENSMUSP00000121124   ⟸   ENSMUST00000126399
RefSeq Acc Id: ENSMUSP00000115016   ⟸   ENSMUST00000133918
RefSeq Acc Id: ENSMUSP00000114425   ⟸   ENSMUST00000128718
RefSeq Acc Id: ENSMUSP00000121621   ⟸   ENSMUST00000136421
RefSeq Acc Id: XP_036022004   ⟸   XM_036166111
- Peptide Label: isoform X2
Protein Domains
LRRCT   LRRNT

Promoters
RGD ID:6890080
Promoter ID:EPDNEW_M8490
Type:initiation region
Name:Lrrtm4_1
Description:Mus musculus leucine rich repeat transmembrane neuronal 4 , transcriptvariant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38680,018,967 - 80,019,027EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2389180 AgrOrtholog
Ensembl Genes ENSMUSG00000052581 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000074232 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000114425 UniProtKB/TrEMBL
  ENSMUSP00000114465 UniProtKB/TrEMBL
  ENSMUSP00000115016 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000117263 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSP00000117445 UniProtKB/Swiss-Prot
  ENSMUSP00000121124 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000121621 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000074662 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000126005 UniProtKB/Swiss-Prot
  ENSMUST00000126399 UniProtKB/Swiss-Prot
  ENSMUST00000128718 UniProtKB/TrEMBL
  ENSMUST00000133918 UniProtKB/Swiss-Prot
  ENSMUST00000136421 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUST00000145407 UniProtKB/TrEMBL
  ENSMUST00000147663 ENTREZGENE, UniProtKB/TrEMBL
Gene3D-CATH 3.80.10.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Leu-rich_rpt UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Leu-rich_rpt_typical-subtyp UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  LRR_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:243499 UniProtKB/Swiss-Prot
MGD MGI:2389180 ENTREZGENE
NCBI Gene 243499 ENTREZGENE
Pfam LRR_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  LRR_8 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Lrrtm4 PhenoGen
PROSITE LRR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART LRR_TYP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0R4J1T4 ENTREZGENE, UniProtKB/TrEMBL
  D3YVG2_MOUSE UniProtKB/TrEMBL
  D3YVI4_MOUSE UniProtKB/TrEMBL
  E9Q8Y9 ENTREZGENE, UniProtKB/TrEMBL
  LRRT4_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
  Q8BYQ8 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary Q8C030 UniProtKB/Swiss-Prot
  Q8JZS8 UniProtKB/Swiss-Prot