Vmo1 (vitelline membrane outer layer 1 homolog (chicken)) - Rat Genome Database
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Gene: Vmo1 (vitelline membrane outer layer 1 homolog (chicken)) Mus musculus
Analyze
Symbol: Vmo1
Name: vitelline membrane outer layer 1 homolog (chicken)
RGD ID: 1621234
MGI Page MGI
Description: Predicted to localize to extracellular region. Orthologous to human VMO1 (vitelline membrane outer layer 1 homolog); INTERACTS WITH benzo[a]pyrene; carbon nanotube; pirinixic acid.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: Gm741; RP23-122P1.11; vitelline membrane outer layer protein 1 homolog
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391170,404,342 - 70,405,442 (-)NCBIGRCm39mm39
GRCm381170,513,516 - 70,514,616 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1170,513,516 - 70,514,616 (-)EnsemblGRCm38mm10GRCm38
MGSCv371170,327,018 - 70,328,118 (-)NCBIGRCm37mm9NCBIm37
MGSCv361170,329,711 - 70,330,811 (-)NCBImm8
Celera1178,060,811 - 78,061,911 (-)NCBICelera
Cytogenetic Map11B3NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
1. RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:14610273   PMID:17049805   PMID:21267068   PMID:21873635  


Genomics

Comparative Map Data
Vmo1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391170,404,342 - 70,405,442 (-)NCBIGRCm39mm39
GRCm381170,513,516 - 70,514,616 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1170,513,516 - 70,514,616 (-)EnsemblGRCm38mm10GRCm38
MGSCv371170,327,018 - 70,328,118 (-)NCBIGRCm37mm9NCBIm37
MGSCv361170,329,711 - 70,330,811 (-)NCBImm8
Celera1178,060,811 - 78,061,911 (-)NCBICelera
Cytogenetic Map11B3NCBI
VMO1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl174,785,285 - 4,786,433 (-)EnsemblGRCh38hg38GRCh38
GRCh38174,785,285 - 4,786,364 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37174,688,580 - 4,689,729 (-)NCBIGRCh37GRCh37hg19GRCh37
GRCh37174,688,580 - 4,689,659 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36174,635,320 - 4,636,473 (-)NCBINCBI36hg18NCBI36
Celera174,703,786 - 4,704,935 (-)NCBI
Cytogenetic Map17p13.2NCBI
HuRef174,576,831 - 4,577,979 (-)NCBIHuRef
CHM1_1174,697,335 - 4,698,484 (-)NCBICHM1_1
Vmo1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21055,227,944 - 55,234,794 (-)NCBI
Rnor_6.0 Ensembl1057,120,499 - 57,121,584 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01057,120,499 - 57,121,584 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01056,878,079 - 56,879,800 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41057,358,237 - 57,359,322 (-)NCBIRGSC3.4rn4RGSC3.4
Celera1054,374,322 - 54,375,407 (-)NCBICelera
Cytogenetic Map10q24NCBI
Vmo1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495546710,192,328 - 10,210,548 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495546710,197,185 - 10,210,472 (-)NCBIChiLan1.0ChiLan1.0
VMO1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1174,821,474 - 4,822,623 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl174,821,474 - 4,822,623 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0174,832,104 - 4,834,669 (-)NCBIMhudiblu_PPA_v0panPan3
VMO1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl531,786,057 - 31,787,068 (+)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.1531,784,284 - 31,788,841 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Vmo1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049366772,903,520 - 2,904,458 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
VMO1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1252,104,599 - 52,115,533 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11252,108,973 - 52,109,987 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21254,329,874 - 54,330,888 (+)NCBISscrofa10.2Sscrofa10.2susScr3
VMO1
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1164,261,009 - 4,262,174 (-)NCBI
ChlSab1.1 Ensembl164,261,012 - 4,262,168 (-)Ensembl
Vmo1
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247868,666,894 - 8,667,871 (-)NCBI


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
26884453Sklq16_mskull length QTL 16, 16 week (mouse)11330000072800000Mouse
13208559Wght10_mweight 10 (mouse)11400000089000000Mouse
13208558Lgth12_mbody length 12 (mouse)11400000095000000Mouse
1300905Scc6_mcolon tumor susceptibility 6 (mouse)Not determined11693027789128908Mouse
1357859Lvrq7_mliver weight QTL 7 (mouse)Not determined1112318637118131898Mouse
39128214Lwq20_mliver weight QTL 20 (mouse)1112318637118131898Mouse
4141894Nidd6k_mNidd6 on KK-A (mouse)Not determined1917420497007000Mouse
10412246Dfs2_mdental fluorosis suseptibility 2 (mouse)Not determined112185736495990405Mouse
13208569Bmiq10_mbody mass index QTL 10 (mouse)113600000085000000Mouse
1301328Mol4_mmodifier of LPS-response 4 (mouse)Not determined113639175083590530Mouse
1301788Lbw8_mlupus NZB x NZW 8 (mouse)Not determined113661246070618665Mouse
1301896Tria1_mT-cell receptor induced activation 1 (mouse)Not determined113672273870723028Mouse
4141853Skmw17_mskeletal muscle weight 17 (mouse)Not determined113719011571190238Mouse
10766457Nwa3_mNew Zealand White autoimmunity 3 (mouse)113812528972125383Mouse
11532698Sluc36a_msusceptibility to lung cancer 36a (mouse)114236579176365904Mouse
11532699Sluc36b_msusceptibility to lung cancer 36b (mouse)114236579176365904Mouse
4142300Ctrq3_mC. trachomatis resistance QTL 3 (mouse)Not determined114473921176963931Mouse
4141367Inf1_macute ozone induced inflammation (mouse)Not determined44739211113167183Mouse
4141000Nidd3_mnon-insulin-dependent diabetes mellitus 3 (mouse)Not determined4515120179151308Mouse
1302021Nidd1n_mnon-insulin-dependent diabetes mellitus 1 in NSY (mouse)Not determined114527504680087498Mouse
1357878Mastr_mmodifier of astrocytoma (mouse)Not determined114581775489927907Mouse
1300765Bbaa4_mB.burgdorferi-associated arthritis 4 (mouse)Not determined114629434180294436Mouse
1301988Bmd11_mbone mineral density 11 (mouse)Not determined114642858180428696Mouse
1301830Ssta4_msusceptibility to Salmonella typhimurium antigens 4 (mouse)Not determined115018736584187585Mouse
13524840Ppiq9a_mprepulse inhibition QTL 9a (mouse)115260355986603559Mouse
1300774Pgia7_mproteoglycan induced arthritis 7 (mouse)Not determined115349976287499911Mouse
4141830Pregq1_mpregnancy QTL 1 (mouse)Not determined115423592683842826Mouse
4141875Etax9_methanol induced ataxia 9 (mouse)Not determined5539415972319101Mouse
4142121Tmc1m2_mTmc1 modifier 2 (mouse)Not determined1156973201114267131Mouse
1300664Etohcta9_methanol conditioned taste aversion 9 (mouse)Not determined115786383491863932Mouse
10053682Eae45_mexperimental allergic encephalomyelitis susceptibility 45 (mouse)Not determined115859972974863932Mouse
1300924Ity2_mimmunity to S. typhimurium 2 (mouse)Not determined15861720487804412Mouse
4141982Skts-fp2_mskin tumor susceptibility in FVB and PWK 2 (mouse)Not determined5882844085175703Mouse
1301987Pid3_mprior incubation determinant 3 (mouse)Not determined116179599488808902Mouse
1301319Dautb4_mdopamine uptake transporter binding 4 (mouse)Not determined116226517996265327Mouse
27226730Tibmd1_mtibia midshaft diameter 1, 5 week (mouse)1162700000109500000Mouse
1301999Lmr15_mleishmaniasis resistance 15 (mouse)Not determined116342858181939647Mouse
10044004Stzid3_mstreptozotocin induced diabetes susceptibility 3 (mouse)Not determined116342858194173092Mouse
11039501Ltpr6a_mLeishmania tropica response 6a (mouse)116493951098939647Mouse
11039502Ltpr6b_mLeishmania tropica response 6b (mouse)116493951098939647Mouse
11039515Ltpr6_mLeishmania tropica response 6 (mouse)116493951098939647Mouse
1301546Pcir2_mperiosteal circumference 2 (mouse)Not determined1166842594100842826Mouse
1357766Si5lq6_mserum IGFBP-5 level QTL 6 (mouse)Not determined1166842594100842826Mouse
4141012Femwf6_mfemur work to failure 6 (mouse)Not determined66842594100842826Mouse
1301833Tbbmd5_mtotal body bone mineral density 5 (mouse)Not determined1166842594100842826Mouse
1300784Prdt3_mprion disease incubation time 3 (mouse)Not determined1166842594100842826Mouse
1300628Lgth6_mbody length 6 (mouse)Not determined1166842594100842826Mouse
4142316Ity2b_mimmunity to S. typhimurium 2b (mouse)Not determined116718736579923086Mouse
27226783Tibl5_mtibia length 5, 5 week (mouse)1168300000102000000Mouse
36049778Ars6_mantibody response to SARS-CoV 6, day 15, IgM (mouse)116910000072600000Mouse
36049779Ars7_mantibody response to SARS-CoV 7, day 29, IgG1 (mouse)116910000072600000Mouse
36049784Ars8_mantibody response to SARS-CoV 8, day 29, IgG2a+IgG2c (mouse)116910000072600000Mouse
36049785Ars9_mantibody response to SARS-CoV 9, day 29, IgM (mouse)116910000072600000Mouse
36049786Ars10_mantibody response to SARS-CoV 10, 4 days post-rechallenge, IgG2a+IgG2c (mouse)116910000072600000Mouse
36049787Ars11_mantibody response to SARS-CoV 11, 4 days post-rechallenge, IgM (mouse)116910000072600000Mouse
36049788Ars1_mantibody response to SARS-CoV 1, day 7, IgG1 (mouse)116910000072600000Mouse
36049789Ars2_mantibody response to SARS-CoV 2, day 7, IgG2a+IgG2c (mouse)116910000072600000Mouse
36049790Ars3_mantibody response to SARS-CoV 3, day 7, IgG2b (mouse)116910000072600000Mouse
36049791Ars4_mantibody response to SARS-CoV 4, day 7, IgG3 (mouse)116910000072600000Mouse
36049792Ars5_mantibody response to SARS-CoV 5, day 7, IgM (mouse)116910000072600000Mouse
35673314Ari2_mantibody response to influenza 2, day 10, IgG3 (mouse)116910000072600000Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:166
Count of miRNA genes:160
Interacting mature miRNAs:165
Transcripts:ENSMUST00000021179
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000021179   ⟹   ENSMUSP00000021179
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1170,513,516 - 70,514,616 (-)Ensembl
RefSeq Acc Id: NM_001013607   ⟹   NP_001013625
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391170,404,342 - 70,405,442 (-)NCBI
GRCm381170,513,516 - 70,514,616 (-)ENTREZGENE
MGSCv371170,327,018 - 70,328,118 (-)RGD
Celera1178,060,811 - 78,061,911 (-)RGD
cM Map11 ENTREZGENE
Sequence:
Protein Sequences
Protein RefSeqs NP_001013625 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDL12573 (Get FASTA)   NCBI Sequence Viewer  
  Q5SXG7 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_001013625   ⟸   NM_001013607
- Peptide Label: precursor
- UniProtKB: Q5SXG7 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSMUSP00000021179   ⟸   ENSMUST00000021179

Promoters
RGD ID:8675328
Promoter ID:EPDNEW_M15695
Type:multiple initiation site
Name:Vmo1_1
Description:Mus musculus vitelline membrane outer layer 1 homolog , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381170,514,614 - 70,514,674EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2685587 AgrOrtholog
Ensembl Genes ENSMUSG00000020830 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Protein ENSMUSP00000021179 ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000021179 ENTREZGENE, UniProtKB/Swiss-Prot
Gene3D-CATH 2.100.10.20 UniProtKB/Swiss-Prot
InterPro VOMI UniProtKB/Swiss-Prot
  VOMI_sf UniProtKB/Swiss-Prot
KEGG Report mmu:327956 UniProtKB/Swiss-Prot
MGD MGI:2685587 ENTREZGENE
NCBI Gene 327956 ENTREZGENE
PANTHER PTHR18841 UniProtKB/Swiss-Prot
Pfam VOMI UniProtKB/Swiss-Prot
PhenoGen Vmo1 PhenoGen
Superfamily-SCOP SSF51092 UniProtKB/Swiss-Prot
UniProt Q5SXG7 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary A2CFA5 UniProtKB/Swiss-Prot