Gm9895 (predicted gene 9895) - Rat Genome Database

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Gene: Gm9895 (predicted gene 9895) Mus musculus
Analyze
Symbol: Gm9895
Name: predicted gene 9895
RGD ID: 1621165
MGI Page MGI
Description:
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: VALIDATED
Previously known as: ENSMUSG00000052976
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391929,044,701 - 29,046,903 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1929,044,461 - 29,075,920 (+)EnsemblGRCm39 Ensembl
GRCm381929,067,301 - 29,069,503 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1929,067,347 - 29,069,503 (+)EnsemblGRCm38mm10GRCm38
MGSCv371929,141,825 - 29,144,012 (+)NCBIGRCm37MGSCv37mm9NCBIm37
Celera1929,842,655 - 29,844,842 (+)NCBICelera
Cytogenetic Map19C1NCBI
cM Map1923.61NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:14610273   PMID:16141072   PMID:16141073  


Genomics

Variants

.
Variants in Gm9895
76 total Variants

QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301271Datd_mdopamine transporter density (mouse)Not determined19132340234Mouse
13506250Renmq1_mrenal mercury accumulation QTL 1 (mouse)192738559461385705Mouse
10412251Mnp_mmodifier of Niemann Pick type C1 (mouse)Not determined192023431454234461Mouse
1357596Tgct3_mtesticular germ cell tumor 3 (mouse)Not determined192198409132912719Mouse
11039522Tbbr4_mTrypanosoma brucei brucei response 4 (mouse)19531332639313470Mouse
1301336Alcp23_malcohol preference locus 23 (mouse)Not determined191591260749912719Mouse
1558876W3q14_mweight 3 weeks QTL 14 (mouse)Not determined192231332653911504Mouse
1302019Pgia23_mproteoglycan induced arthritis 23 (mouse)Not determined19978745343787602Mouse
1301633Alcp24_malcohol preference locus 24 (mouse)Not determined191591260749912719Mouse
14928311Manh85_mmandible shape 85 (mouse)191191478945914789Mouse
1357568Tgct4_mtesticular germ cell tumor 4 (mouse)Not determined192777198535295381Mouse
1301451Ath16_matherosclerosis 16 (mouse)Not determined192542691759427005Mouse
4141659Pbwg20_mpostnatal body weight growth 20 (mouse)Not determined192137870555378928Mouse
10413881Moe2_mmodifier of epilepsy 2 (mouse)191492301648923138Mouse
1302004Lfp2_mlong free running period 2 (mouse)Not determined191829516252295381Mouse
1300923Bits4_mbitterness sensitivity 4 (mouse)Not determined19332321637323348Mouse
12790634Ebm1_mEpidermolysis Bullosa modifier 1 (mouse)192498843958988439Mouse
4141138Femwf11_mfemur work to failure 11 (mouse)Not determined2814034861420004Mouse
4142343Moen2_mmodifier of engrailed QTL 2 (mouse)Not determined192023431454234461Mouse
1302123Tlsr8_mthymic lymphoma suppressor region 8 (mouse)Not determined192513600242388916Mouse
4142406Pbctlp1_mperipheral blood cytotoxic T lymphocyte percentage 1 (mouse)Not determined132875174Mouse
1300904Chab5_mcholesterol absorption 5 (mouse)Not determined19165376435653927Mouse
26884385Skwq14_mskull length QTL 14, 16 week (mouse)19325000035877400Mouse
1301800Faq10_mfluctuating asymmetry QTL 10 (mouse)Not determined19332321637323348Mouse
1300591Pas3_mpulmonary adenoma susceptibility 3 (mouse)Not determined19332321637323348Mouse
1302063Eae19_mexperimental allergic encephalomyelitis 19 (mouse)Not determined191829516252295381Mouse
1302126Skull26_mskull morphology 26 (mouse)Not determined19332321637323348Mouse
1301228Iba4_minduction of brown adipocytes 4 (mouse)Not determined19930571543305821Mouse


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSMUST00000235636
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1929,044,471 - 29,046,932 (+)Ensembl
GRCm38.p6 Ensembl1929,067,347 - 29,069,503 (+)Ensembl
Ensembl Acc Id: ENSMUST00000240789
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1929,044,471 - 29,046,930 (+)Ensembl
Ensembl Acc Id: ENSMUST00000241060
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1929,044,636 - 29,046,927 (+)Ensembl
Ensembl Acc Id: ENSMUST00000241290
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1929,044,538 - 29,046,928 (+)Ensembl
Ensembl Acc Id: ENSMUST00000241410
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1929,044,639 - 29,075,920 (+)Ensembl
Ensembl Acc Id: ENSMUST00000241593
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1929,044,665 - 29,072,738 (+)Ensembl
Ensembl Acc Id: ENSMUST00000241932
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1929,044,640 - 29,046,918 (+)Ensembl
Ensembl Acc Id: ENSMUST00000242072
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1929,044,669 - 29,075,918 (+)Ensembl
Ensembl Acc Id: ENSMUST00000242440
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1929,044,682 - 29,046,919 (+)Ensembl
Ensembl Acc Id: ENSMUST00000242995
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1929,044,461 - 29,046,925 (+)Ensembl
Ensembl Acc Id: ENSMUST00000256157
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1929,044,688 - 29,075,917 (+)Ensembl
Ensembl Acc Id: ENSMUST00000256158
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1929,044,689 - 29,074,052 (+)Ensembl
Ensembl Acc Id: ENSMUST00000256159
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1929,044,717 - 29,074,052 (+)Ensembl
Ensembl Acc Id: ENSMUST00000256160
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1929,044,715 - 29,066,490 (+)Ensembl
Ensembl Acc Id: ENSMUST00000256161
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1929,044,715 - 29,059,593 (+)Ensembl
Ensembl Acc Id: ENSMUST00000256162
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1929,044,682 - 29,051,577 (+)Ensembl
Ensembl Acc Id: ENSMUST00000256163
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1929,044,639 - 29,046,923 (+)Ensembl
Ensembl Acc Id: ENSMUST00000256164
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1929,044,640 - 29,046,922 (+)Ensembl
Ensembl Acc Id: ENSMUST00000256165
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1929,044,639 - 29,046,914 (+)Ensembl
Ensembl Acc Id: ENSMUST00000256166
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1929,044,689 - 29,046,922 (+)Ensembl
Ensembl Acc Id: ENSMUST00000256167
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1929,044,717 - 29,046,922 (+)Ensembl
RefSeq Acc Id: NR_045687
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391929,044,701 - 29,046,903 (+)NCBI
GRCm381929,067,301 - 29,069,503 (+)ENTREZGENE
Celera1929,842,621 - 29,844,823 (+)ENTREZGENE
cM Map19 ENTREZGENE
Sequence:
Protein Sequences
GenBank Protein BAC25699 (Get FASTA)   NCBI Sequence Viewer  

Promoters
RGD ID:15095066
Promoter ID:EPDNEWNC_M2972
Type:initiation region
Name:Gm9895_1
Description:predicted gene 9895 [Source:NCBI gene;Acc:100503337]
SO ACC ID:SO:0000170
Source:EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381929,067,315 - 29,067,375EPDNEWNC

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000118038 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000256167 ENTREZGENE
MGD MGI:3642802 ENTREZGENE
NCBI Gene Gm9895 ENTREZGENE
PhenoGen Gm9895 PhenoGen
RNAcentral URS000075CBAC RNACentral
UniProt Q8BT27_MOUSE UniProtKB/TrEMBL