Nanog-ps2 (Nanog pseudogene 2) - Rat Genome Database

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Gene: Nanog-ps2 (Nanog pseudogene 2) Mus musculus
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Symbol: Nanog-ps2
Name: Nanog pseudogene 2
RGD ID: 1621139
MGI Page MGI
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: na; nanogPb
Related Functional Gene: Nanog  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391261,505,109 - 61,505,830 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1261,505,296 - 61,505,824 (+)EnsemblGRCm39 Ensembl
GRCm381261,458,323 - 61,459,044 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1261,458,510 - 61,459,038 (+)EnsemblGRCm38mm10GRCm38
MGSCv371262,559,209 - 62,560,130 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361262,376,335 - 62,377,056 (+)NCBIMGSCv36mm8
Celera1262,646,072 - 62,646,993 (+)NCBICelera
Cytogenetic Map12C1NCBI
cM Map1226.43NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:15233988  


Genomics

Variants

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Variants in Nanog-ps2
25 total Variants

QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4142234Tmc1m3_mTmc1 modifier 3 (mouse)Not determined12541844077031203Mouse
27226753Femd7_mfemur midshaft diameter 7, 10 week (mouse)12955000084146774Mouse
13207568Tcq14_mtotal cholesterol QTL 14 (mouse)121166000197176774Mouse
1558978Cplaq10_mcircadian period of locomotor activity 10 (mouse)Not determined121534102679040364Mouse
1301574Lmblgq5_mlimb length QTL 5 (mouse)Not determined121759644780956883Mouse
1301989Hdlq18_mHDL QTL 18 (mouse)Not determined122916068563160884Mouse
1300636Gct2_mgranulosa cell tumorigenesis 2 (mouse)Not determined122916068563160884Mouse
4141843Moen3_mmodifier of engrailed QTL 3 (mouse)Not determined122980158463801733Mouse
14747008Mancz10_mmandible centroid size 10 (mouse)122986352263863522Mouse
10402492Dipa8_mdrug induced psychomotor activation 8 (mouse)Not determined123493387268934019Mouse
1300818Bbaa10_mB.burgdorferi-associated arthritis 10 (mouse)Not determined123509100465511019Mouse
4142002Tbqt3_mtibia bone quality traits 3 (mouse)Not determined1235285496109936243Mouse
1357479Splwt1_mspleen weight 1 (mouse)Not determined124169317590887526Mouse
1357757Lnopy2_mlens opacity 2 (mouse)Not determined125284662686846796Mouse
1357749Vtbt13_mvertebral trabecular bone trait 13 (mouse)Not determined125313200287132145Mouse
12832727Ahrq1_mairway hyperresponsiveness QTL 1 (mouse)125469591082665939Mouse
13504832Bacszq2_mbaculum size QTL 2 (mouse)125694579875345787Mouse
27226728Tibl20_mtibia length 20, 16 week (mouse)125914678693866774Mouse
27226776Tibl6_mtibia length 6, 5 week (mouse)126064678692666774Mouse
10043948Pbft6_mpercent body fat 6 (mouse)Not determined126120542795205427Mouse


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NG_005210 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC159279 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000190988
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1261,505,296 - 61,505,824 (+)Ensembl
GRCm38.p6 Ensembl1261,458,510 - 61,459,038 (+)Ensembl

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000100476 Ensembl
MGD MGI:3051570 ENTREZGENE
NCBI Gene 446216 ENTREZGENE
PhenoGen Nanog-ps2 PhenoGen