Gm6500 (predicted gene 6500) - Rat Genome Database

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Gene: Gm6500 (predicted gene 6500) Mus musculus
Analyze
Symbol: Gm6500
Name: predicted gene 6500
RGD ID: 1621085
MGI Page MGI
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: MODEL
Previously known as: EG624388
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X116,796,144 - 116,797,044 (-)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX116,796,138 - 116,796,588 (-)EnsemblGRCm39 Ensembl
GRCm38X117,886,447 - 117,887,347 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX117,886,441 - 117,886,891 (-)EnsemblGRCm38mm10GRCm38
MGSCv37X115,000,056 - 115,000,500 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X113,989,043 - 114,003,835 (-)NCBIMGSCv36mm8
CeleraX104,580,049 - 104,580,478 (-)NCBICelera
Cytogenetic MapXE1NCBI
cM MapX49.58NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

.
Variants in Gm6500
32 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:34
Count of miRNA genes:33
Interacting mature miRNAs:33
Transcripts:ENSMUST00000119412
Prediction methods:Miranda, Pita, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357433Dbts2_mdiabetes 2 (mouse)Not determinedX7226295150107038Mouse
4141630Gct6_mgranulosa cell tumorigenesis 6 (mouse)Not determined47179121129764756Mouse
13824980Ferq1_mgenetic fertility QTL 1 (mouse)X54045360148782996Mouse
4141665Mhysq2_mmale hybrid sterility QTL 2 (mouse)Not determined71453852139203212Mouse
4141803Lmr30_mleishmaniasis resistance 30 (mouse)Not determined85062606119062720Mouse
13208552Wght12_mweight 12 (mouse)X94043606149782996Mouse
13208556Lgth14_mbody length 14 (mouse)X94043606149782996Mouse
1357823Spha3_msperm head anomaly 3 (mouse)Not determinedX102055848162758941Mouse


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000119412
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX116,796,138 - 116,796,588 (-)Ensembl
GRCm38.p6 EnsemblX117,886,441 - 117,886,891 (-)Ensembl
RefSeq Acc Id: XM_003945606   ⟹   XP_003945655
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38X117,886,447 - 117,886,891 (-)NCBI
RefSeq Acc Id: XM_003946365   ⟹   XP_003946414
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
CeleraX104,580,049 - 104,580,478 (-)NCBI

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000084324 Ensembl
MGD MGI:3648842 ENTREZGENE
NCBI Gene 624388 ENTREZGENE
PhenoGen Gm6500 PhenoGen