Gm9257 (predicted gene 9257) - Rat Genome Database

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Gene: Gm9257 (predicted gene 9257) Mus musculus
Analyze
Symbol: Gm9257
Name: predicted gene 9257
RGD ID: 1620931
MGI Page MGI
Description:
Type: protein-coding (Ensembl: unprocessed_pseudogene)
RefSeq Status: MODEL
Previously known as: EG668588; zinc finger protein 120-like
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391219,656,597 - 19,709,187 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1219,656,930 - 19,673,086 (+)EnsemblGRCm39 Ensembl
GRCm381219,606,598 - 19,659,186 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1219,606,929 - 19,623,085 (+)EnsemblGRCm38mm10GRCm38
MGSCv371219,612,784 - 19,640,522 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361219,853,381 - 19,904,621 (+)NCBIMGSCv36mm8
Cytogenetic Map12A1.2NCBI
cM Map128.22NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:10512203   PMID:15840001  


Genomics

Variants

.
Variants in Gm9257
1424 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:164
Count of miRNA genes:158
Interacting mature miRNAs:163
Transcripts:ENSMUST00000105167
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301393Dyscalc3_mdystrophic cardiac calcinosis 3 (mouse)Not determined12122418579Mouse
12910983Pifs1_mpeptide-induced fatal syndrome 1 (mouse)12130433078Mouse
4141436Chldq7_mcholesterol and HDL QTL 7 (mouse)Not determined12127920733Mouse
1301143Skull17_mskull morphology 17 (mouse)Not determined12122418579Mouse
1301655Bmd12_mbone mineral density 12 (mouse)Not determined12124662697Mouse
1301207Circp1_mcircadian photosensitivity 1 (mouse)Not determined12133430339Mouse
1301723Fcsa7_mfemoral cross-sectional area 7 (mouse)Not determined12949100443491112Mouse
11039525Tbbr2_mTrypanosoma brucei brucei response 2 (mouse)12122418579Mouse
15039339Nmrs29_mNAFLD-associated magnetic resonance shift 29 (mouse)121782585251825852Mouse
4141296Femwf9_mfemur work to failure 9 (mouse)Not determined127920733Mouse
10043977Obq34_mobesity QTL 34 (mouse)Not determined121514733149147331Mouse
10043848Hdlq90_mHDL QTL 90 (mouse)Not determined121783993951840081Mouse
12792982Fbmd4_mfemoral bone mineral density 4, females only (mouse)121004319424365136Mouse
1558978Cplaq10_mcircadian period of locomotor activity 10 (mouse)Not determined121534102679040364Mouse
1301574Lmblgq5_mlimb length QTL 5 (mouse)Not determined121759644780956883Mouse
1300870Ath18_matherosclerosis 18 (mouse)Not determined121825996652260067Mouse
13207568Tcq14_mtotal cholesterol QTL 14 (mouse)121166000197176774Mouse
1357519Vtbt12_mvertebral trabecular bone trait 12 (mouse)Not determined12124662697Mouse
10402496Lmr22_mleishmaniasis resistance 22 (mouse)Not determined12122418579Mouse
27226753Femd7_mfemur midshaft diameter 7, 10 week (mouse)12955000084146774Mouse
26884410Bzwq15_mbi-zygomatic width QTL 15, 16 week (mouse)12365000029749999Mouse
4141660Nbwa1_mNZB and NZW autoimmunity 1 (mouse)Not determined1234013434340302Mouse
4142234Tmc1m3_mTmc1 modifier 3 (mouse)Not determined12541844077031203Mouse
13524843Ppiq8_mprepulse inhibition QTL 8 (mouse)121104319450945796Mouse
26884413Bzwq9_mbi-zygomatic width QTL 9, 10 week (mouse)121615000147746783Mouse
13524839Ppiq10_mprepulse inhibition QTL 10 (mouse)121304319554945798Mouse
13208568Bmiq11_mbody mass index QTL 11 (mouse)12805000040049999Mouse
4141516slwr_mslowlearner (mouse)Not determined1239247546392614Mouse
1301925Ath6_matherosclerosis 6 (mouse)Not determined12132758756Mouse
1301163Eae16_msusceptibility to experimental allergic encephalomyelitis 16 (mouse)Not determined12772315841723301Mouse
14746972Manh72_mmandible shape 72 (mouse)121061528144615281Mouse
1301037Cd4ts5_mCD4 T cell subset 5 (mouse)Not determined12835244442352581Mouse
10401249Bglu15_mblood glucose level 15 (mouse)Not determined121062064244620809Mouse


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSMUST00000221254
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1219,656,930 - 19,673,086 (+)Ensembl
GRCm38.p6 Ensembl1219,606,929 - 19,623,085 (+)Ensembl
RefSeq Acc Id: XM_006515300   ⟹   XP_006515363
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391219,656,597 - 19,709,187 (+)NCBI
GRCm381219,606,598 - 19,659,186 (+)NCBI
Sequence:
RefSeq Acc Id: XR_003950289
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391219,674,325 - 19,676,221 (+)NCBI
GRCm381219,624,324 - 19,626,028 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_006515363 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_006515363   ⟸   XM_006515300
- Sequence:

Promoters
RGD ID:6822644
Promoter ID:MM_KWN:11266
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:ES_Cell
Transcripts:ENSMUST00000105167,   XM_001002492_GM9257
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361219,612,231 - 19,612,731 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000113957 Ensembl
MGD MGI:3648973 ENTREZGENE
NCBI Gene 668588 ENTREZGENE
PhenoGen Gm9257 PhenoGen