Apol6 (apolipoprotein L 6) - Rat Genome Database

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Gene: Apol6 (apolipoprotein L 6) Mus musculus
Analyze
Symbol: Apol6
Name: apolipoprotein L 6
RGD ID: 1620769
MGI Page MGI
Description: Predicted to enable lipid binding activity. Orthologous to human APOL6 (apolipoprotein L6).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 2310076O14Rik; apolipoprotein L6
RGD Orthologs
Human
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391576,929,195 - 76,941,308 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1576,928,929 - 76,941,306 (+)EnsemblGRCm39 Ensembl
GRCm381577,045,050 - 77,057,108 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1577,044,729 - 77,057,106 (+)EnsemblGRCm38mm10GRCm38
MGSCv371576,875,505 - 76,887,538 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361576,877,870 - 76,887,651 (+)NCBIMGSCv36mm8
Celera1578,533,254 - 78,545,257 (+)NCBICelera
Cytogenetic Map15D3NCBI
cM Map1536.39NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:14610273   PMID:16141072   PMID:16141073   PMID:21267068   PMID:21873635   PMID:30423386  
PMID:35081489   PMID:38167864  


Genomics

Comparative Map Data
Apol6
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391576,929,195 - 76,941,308 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1576,928,929 - 76,941,306 (+)EnsemblGRCm39 Ensembl
GRCm381577,045,050 - 77,057,108 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1577,044,729 - 77,057,106 (+)EnsemblGRCm38mm10GRCm38
MGSCv371576,875,505 - 76,887,538 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361576,877,870 - 76,887,651 (+)NCBIMGSCv36mm8
Celera1578,533,254 - 78,545,257 (+)NCBICelera
Cytogenetic Map15D3NCBI
cM Map1536.39NCBI
APOL6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382235,648,446 - 35,668,404 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2235,648,446 - 35,668,404 (+)EnsemblGRCh38hg38GRCh38
GRCh372236,044,493 - 36,064,451 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362234,374,370 - 34,394,402 (+)NCBINCBI36Build 36hg18NCBI36
Build 342234,368,923 - 34,383,457NCBI
Celera2219,847,673 - 19,867,704 (+)NCBICelera
Cytogenetic Map22q12.3NCBI
HuRef2219,005,530 - 19,025,561 (+)NCBIHuRef
CHM1_12236,003,299 - 36,023,332 (+)NCBICHM1_1
T2T-CHM13v2.02236,108,171 - 36,128,130 (+)NCBIT2T-CHM13v2.0
APOL6
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22345,589,413 - 45,612,267 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12248,285,932 - 48,303,742 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02216,655,209 - 16,670,813 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12234,495,750 - 34,509,920 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2234,495,750 - 34,508,922 (+)Ensemblpanpan1.1panPan2
APOL6
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11028,536,085 - 28,556,766 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1028,534,428 - 28,548,423 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1028,475,914 - 28,484,777 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01029,318,225 - 29,331,222 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1029,319,427 - 29,331,191 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11029,044,234 - 29,056,667 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01029,357,180 - 29,365,485 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01029,533,151 - 29,546,219 (-)NCBIUU_Cfam_GSD_1.0
LOC101970904
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494511,854,911 - 11,855,897 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049364924,860,759 - 4,868,405 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LOC100518305
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1511,920,119 - 11,929,492 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.259,648,650 - 9,658,193 (+)NCBISscrofa10.2Sscrofa10.2susScr3
APOL6
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11918,406,771 - 18,431,437 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1918,406,678 - 18,422,088 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666045107,526,545 - 107,540,328 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0

Variants

.
Variants in Apol6
512 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2689
Count of miRNA genes:826
Interacting mature miRNAs:1086
Transcripts:ENSMUST00000127957, ENSMUST00000129468, ENSMUST00000139304, ENSMUST00000142405, ENSMUST00000148197, ENSMUST00000149569, ENSMUST00000152949
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4141952W3q7_mweight 3 weeks QTL 7 (mouse)Not determined348969478601286Mouse
4142252Tailaq4_mtail length adjusted QTL 4 (mouse)Not determined348969478601286Mouse
4142448Tailq6_mtail length QTL 6 (mouse)Not determined348969478601286Mouse
1357559Scfq2_msubcutaneous fat pad weight QTL 2 (mouse)Not determined15348969478601286Mouse
1357659Epfpq4_mepididymal fat percentage QTL 4 (mouse)Not determined15348969478601286Mouse
27226717Tibw4_mtibia width 4, proximal, 10 week (mouse)15612948178684200Mouse
27226734Tibmd5_mtibia midshaft diameter 5, 10 week (mouse)15612948186684201Mouse
26884442Sklq6_mskull length QTL 6, 5 week (mouse)156129481100797881Mouse
27226777Tibl8_mtibia length 8, 5 week (mouse)15692948184584201Mouse
1301433Rapop5_mradiation-induced apoptosis 5 (mouse)Not determined15927302279474762Mouse
1357526Hyplip2_mhyperlipidemia 2 (mouse)Not determined1512402203102896555Mouse
26884425Cvht2_mcranial vault height 2, 5 week (mouse)1528800146102008435Mouse
1558985Eae32_mexperimental allergic encephalomyelitis susceptibility 32 (mouse)Not determined1532578416103425899Mouse
27226729Tibmd2_mtibia midshaft diameter 2, 5 week (mouse)153800024486684201Mouse
26884402Cvht9_mcranial vault height 9, 16 week (mouse)154216339695497881Mouse
1357703Vtbt17_mvertebral trabecular bone trait 17 (mouse)Not determined154455331378553437Mouse
1301568Tria2_mT-cell receptor induced activation 2 (mouse)Not determined154485914178859281Mouse
1357756Alaa4_malopecia areata 4 (mouse)Not determined154638964680389845Mouse
10755515Amzn3_manatomical modifier of Zfp423 3 (mouse)154638964680389845Mouse
1301006Hfib1_mhepatic fibrogenesis 1 (mouse)Not determined154730633481306479Mouse
1301860Gct3_mgranulosa cell tumorigenesis 3 (mouse)Not determined154740959681409691Mouse
26884397Humsd5_mhumerus midshaft diameter 5, 10 week (mouse)154836339698397881Mouse
26884399Humsd1_mhumerus midshaft diameter 1, 5 week (mouse)1548363396101708435Mouse
1301429Pcir3_mperiosteal circumference 3 (mouse)Not determined154846536282465496Mouse
4142198Hbtq_mhabituation QTL (mouse)Not determined155116070885160833Mouse
10045637Heal27_mwound healing/regeneration 29 (mouse)Not determined155141836185418511Mouse
10412067Pain2_mpain 2 (mouse)Not determined155164533985645626Mouse
1302080Szs13_mseizure susceptibility 13 (mouse)Not determined155168583285694449Mouse
1301708Cocrb14_mcocaine related behavior 14 (mouse)Not determined155180651585806651Mouse
38501067Tip3_mtuberculosis immunophenotype 3, IFN-g level (mouse)155356339689584203Mouse
13504731Cath5_mcarotid atherosclerosis 5 (mouse)155478912988789129Mouse
1302074Bmd4_mbone mineral density 4 (mouse)Not determined1556186708103425899Mouse
27095936Ulnl4_mulna length 4, 5 week (mouse)155676339687684201Mouse
1300800Ses3_msalmonella enteritidis susceptibility 3 (mouse)Not determined155711700591117153Mouse
1357407Pfat4_mpredicted fat percentage 4 (mouse)8.6Body fat amountpredicted fat percentage155711700591117153Mouse
12880420V25Dq8_mvitamin D inactive form serum level QTL 8 (mouse)156158420095584200Mouse
1301601Faq9_mfluctuating asymmetry QTL 9 (mouse)Not determined156316390397163995Mouse
1558786Msq1_mMAV-1 susceptibility QTL 1 (mouse)Not determined156338964681086436Mouse
1302197Bhr2_mbronchial hyperresponsiveness 2 (mouse)Not determined1564306334103425899Mouse
4141135Cia35_mcollagen induced arthritis 35 (mouse)Not determined156481182698811946Mouse
1301119Drb7_mdopamine receptor binding 7 (mouse)Not determined156533657899341028Mouse
1301171Brm2_mbrachyury modifier 2 (mouse)Not determined156552537699525499Mouse
4141921Pstc3_mperiosteal circumference 3 (mouse)Not determined1567270698101270847Mouse
1300627Sluc26_msusceptibility to lung cancer 26 (mouse)Not determined1570345653104073951Mouse
1300648Dbsty4_mdiabesity 4 (mouse)Not determined1570349271104073951Mouse
1300726Pitm4_mprion incubation time 4 (mouse)Not determined1570349271104073951Mouse
1302002Cocia2_mcocaine induced activation 2 (mouse)Not determined157237245979899178Mouse
14747011Mancz13_mmandible centroid size 13 (mouse)1572382669104073951Mouse
12791003Aath8_maortic arch atherosclerosis 8 (mouse)1573430144104073951Mouse
15092079Igly6_mIgG glycosylation 6, GP6 (mouse)157410054082674156Mouse
13442492Mecth2_mmechanosensation threshold 2 (mouse)157466284979387201Mouse
1301472Pain1_mpain 1 (mouse)Not determined157532084690813185Mouse

Markers in Region
D15Mit236  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381577,044,466 - 77,044,582UniSTSGRCm38
MGSCv371576,874,896 - 76,875,012UniSTSGRCm37
Celera1578,532,645 - 78,532,761UniSTS
Cytogenetic Map15D3UniSTS
Cytogenetic Map15E1UniSTS
cM Map1544.1UniSTS
Whitehead Genetic1532.8UniSTS
Whitehead_YAC15 UniSTS


Expression


Sequence


RefSeq Acc Id: ENSMUST00000127957   ⟹   ENSMUSP00000118257
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1576,929,275 - 76,936,548 (+)Ensembl
GRCm38.p6 Ensembl1577,045,075 - 77,052,348 (+)Ensembl
RefSeq Acc Id: ENSMUST00000129468   ⟹   ENSMUSP00000123663
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1576,929,406 - 76,934,899 (+)Ensembl
GRCm38.p6 Ensembl1577,045,206 - 77,050,699 (+)Ensembl
RefSeq Acc Id: ENSMUST00000139304
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1576,936,951 - 76,940,244 (+)Ensembl
GRCm38.p6 Ensembl1577,052,751 - 77,056,044 (+)Ensembl
RefSeq Acc Id: ENSMUST00000142405   ⟹   ENSMUSP00000117135
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1576,928,929 - 76,940,498 (+)Ensembl
GRCm38.p6 Ensembl1577,044,729 - 77,056,298 (+)Ensembl
RefSeq Acc Id: ENSMUST00000148197
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1576,929,687 - 76,930,438 (+)Ensembl
GRCm38.p6 Ensembl1577,045,487 - 77,046,238 (+)Ensembl
RefSeq Acc Id: ENSMUST00000149569   ⟹   ENSMUSP00000120866
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1576,929,476 - 76,941,306 (+)Ensembl
GRCm38.p6 Ensembl1577,045,276 - 77,057,106 (+)Ensembl
RefSeq Acc Id: ENSMUST00000152949   ⟹   ENSMUSP00000121308
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1576,929,478 - 76,935,520 (+)Ensembl
GRCm38.p6 Ensembl1577,045,278 - 77,051,320 (+)Ensembl
RefSeq Acc Id: NM_001163621   ⟹   NP_001157093
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391576,929,275 - 76,936,551 (+)NCBI
GRCm381577,045,075 - 77,052,351 (+)NCBI
MGSCv371576,875,505 - 76,887,538 (+)RGD
Celera1578,533,254 - 78,545,257 (+)RGD
cM Map15 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_028010   ⟹   NP_082286
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391576,929,476 - 76,941,308 (+)NCBI
GRCm381577,045,276 - 77,057,108 (+)NCBI
MGSCv371576,875,505 - 76,887,538 (+)RGD
Celera1578,533,254 - 78,545,257 (+)RGD
cM Map15 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006521419   ⟹   XP_006521482
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391576,929,386 - 76,936,551 (+)NCBI
GRCm381577,045,185 - 77,051,953 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006521420   ⟹   XP_006521483
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391576,929,386 - 76,936,551 (+)NCBI
GRCm381577,045,185 - 77,051,953 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006521421   ⟹   XP_006521484
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391576,929,195 - 76,941,308 (+)NCBI
GRCm381577,045,050 - 77,057,108 (+)NCBI
Sequence:
RefSeq Acc Id: NP_001157093   ⟸   NM_001163621
- Peptide Label: isoform 2
- UniProtKB: B7ZC55 (UniProtKB/TrEMBL),   Q9D6L7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_082286   ⟸   NM_028010
- Peptide Label: isoform 1
- UniProtKB: B7ZC54 (UniProtKB/TrEMBL),   Q9D6L7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006521484   ⟸   XM_006521421
- Peptide Label: isoform X2
- UniProtKB: B7ZC54 (UniProtKB/TrEMBL),   Q9D6L7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006521482   ⟸   XM_006521419
- Peptide Label: isoform X1
- UniProtKB: B7ZC55 (UniProtKB/TrEMBL),   Q9D6L7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006521483   ⟸   XM_006521420
- Peptide Label: isoform X1
- UniProtKB: B7ZC55 (UniProtKB/TrEMBL),   Q9D6L7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000118257   ⟸   ENSMUST00000127957
RefSeq Acc Id: ENSMUSP00000121308   ⟸   ENSMUST00000152949
RefSeq Acc Id: ENSMUSP00000120866   ⟸   ENSMUST00000149569
RefSeq Acc Id: ENSMUSP00000123663   ⟸   ENSMUST00000129468
RefSeq Acc Id: ENSMUSP00000117135   ⟸   ENSMUST00000142405

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-B7ZC55-F1-model_v2 AlphaFold B7ZC55 1-329 view protein structure

Promoters
RGD ID:6825746
Promoter ID:MM_KWN:18921
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:MEF_B4
Transcripts:ENSMUST00000048285,   NM_028010,   OTTMUST00000081704,   OTTMUST00000081705,   OTTMUST00000081706,   UC007WMZ.1,   UC007WNA.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361576,875,251 - 76,875,751 (+)MPROMDB
RGD ID:8684184
Promoter ID:EPDNEW_M20123
Type:initiation region
Name:Apol6_1
Description:Mus musculus apolipoprotein L 6 , transcript variant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M20124  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381577,045,114 - 77,045,174EPDNEW
RGD ID:8684186
Promoter ID:EPDNEW_M20124
Type:single initiation site
Name:Apol6_2
Description:Mus musculus apolipoprotein L 6 , transcript variant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M20123  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381577,046,664 - 77,046,724EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1919189 AgrOrtholog
Ensembl Genes ENSMUSG00000033576 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000127957 ENTREZGENE
  ENSMUST00000127957.8 UniProtKB/TrEMBL
  ENSMUST00000129468.8 UniProtKB/TrEMBL
  ENSMUST00000142405.8 UniProtKB/TrEMBL
  ENSMUST00000149569 ENTREZGENE
  ENSMUST00000149569.9 UniProtKB/TrEMBL
  ENSMUST00000152949.2 UniProtKB/TrEMBL
InterPro ApoL UniProtKB/TrEMBL
KEGG Report mmu:71939 UniProtKB/TrEMBL
MGD MGI:1919189 ENTREZGENE
NCBI Gene 71939 ENTREZGENE
PANTHER APOLIPOPROTEIN L6 UniProtKB/TrEMBL
  PTHR14096 UniProtKB/TrEMBL
Pfam ApoL UniProtKB/TrEMBL
PhenoGen Apol6 PhenoGen
UniProt B7ZC54 ENTREZGENE, UniProtKB/TrEMBL
  B7ZC55 ENTREZGENE, UniProtKB/TrEMBL
  B7ZC56_MOUSE UniProtKB/TrEMBL
  B7ZC57_MOUSE UniProtKB/TrEMBL
  D6RFC1_MOUSE UniProtKB/TrEMBL
  Q3UN08_MOUSE UniProtKB/TrEMBL
  Q9D6L7 ENTREZGENE, UniProtKB/TrEMBL