Imported Disease Annotations - CTDTerm | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | Human Influenza | | ISO | APOL6 (Homo sapiens) | 11554173 | CTD Direct Evidence: marker/mechanism | CTD | PMID:23326326 | |
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Imported Disease Annotations - CTDTerm | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | Human Influenza | | ISO | APOL6 (Homo sapiens) | 11554173 | CTD Direct Evidence: marker/mechanism | CTD | PMID:23326326 | |
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# | Reference Title | Reference Citation |
1. | Data Import for Chemical-Gene Interactions | RGD automated import pipeline for gene-chemical interactions |
PMID:10349636 | PMID:11042159 | PMID:11076861 | PMID:11217851 | PMID:12466851 | PMID:12477932 | PMID:14610273 | PMID:16141072 | PMID:16141073 | PMID:21267068 | PMID:21873635 | PMID:30423386 |
PMID:35081489 | PMID:38167864 |
Apol6 (Mus musculus - house mouse) |
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APOL6 (Homo sapiens - human) |
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APOL6 (Pan paniscus - bonobo/pygmy chimpanzee) |
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APOL6 (Canis lupus familiaris - dog) |
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LOC101970904 (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
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LOC100518305 (Sus scrofa - pig) |
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APOL6 (Chlorocebus sabaeus - green monkey) |
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Variants in Apol6
512 total Variants |
The detailed report is available here: | Full Report | CSV | TAB | Printer | ||||
miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/). For more information about miRGate, see PMID:25858286 or access the full paper here. |
The following QTLs overlap with this region. | Full Report | CSV | TAB | Printer | Gviewer |
D15Mit236 |
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RefSeq Transcripts | NM_001163621 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
NM_028010 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_006521419 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_006521420 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_006521421 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
GenBank Nucleotide | AI481097 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
AI481775 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK010208 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK144563 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AL603843 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
BC113126 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
RefSeq Acc Id: | ENSMUST00000127957 ⟹ ENSMUSP00000118257 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | ENSMUST00000129468 ⟹ ENSMUSP00000123663 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | ENSMUST00000139304 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | ENSMUST00000142405 ⟹ ENSMUSP00000117135 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | ENSMUST00000148197 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | ENSMUST00000149569 ⟹ ENSMUSP00000120866 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | ENSMUST00000152949 ⟹ ENSMUSP00000121308 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | NM_001163621 ⟹ NP_001157093 | ||||||||||||||||||||||||
RefSeq Status: | VALIDATED | ||||||||||||||||||||||||
Type: | CODING | ||||||||||||||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | NM_028010 ⟹ NP_082286 | ||||||||||||||||||||||||
RefSeq Status: | VALIDATED | ||||||||||||||||||||||||
Type: | CODING | ||||||||||||||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_006521419 ⟹ XP_006521482 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_006521420 ⟹ XP_006521483 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_006521421 ⟹ XP_006521484 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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Sequence: |
Protein RefSeqs | NP_001157093 | (Get FASTA) | NCBI Sequence Viewer |
NP_082286 | (Get FASTA) | NCBI Sequence Viewer | |
XP_006521482 | (Get FASTA) | NCBI Sequence Viewer | |
XP_006521483 | (Get FASTA) | NCBI Sequence Viewer | |
XP_006521484 | (Get FASTA) | NCBI Sequence Viewer | |
GenBank Protein | BAB26769 | (Get FASTA) | NCBI Sequence Viewer |
BAE25940 | (Get FASTA) | NCBI Sequence Viewer | |
Ensembl Protein | ENSMUSP00000117135.2 | ||
ENSMUSP00000118257 | |||
ENSMUSP00000118257.2 | |||
ENSMUSP00000120866 | |||
ENSMUSP00000120866.2 | |||
ENSMUSP00000121308.2 | |||
ENSMUSP00000123663.2 |
RefSeq Acc Id: | NP_001157093 ⟸ NM_001163621 |
- Peptide Label: | isoform 2 |
- UniProtKB: | B7ZC55 (UniProtKB/TrEMBL), Q9D6L7 (UniProtKB/TrEMBL) |
- Sequence: |
RefSeq Acc Id: | NP_082286 ⟸ NM_028010 |
- Peptide Label: | isoform 1 |
- UniProtKB: | B7ZC54 (UniProtKB/TrEMBL), Q9D6L7 (UniProtKB/TrEMBL) |
- Sequence: |
RefSeq Acc Id: | XP_006521484 ⟸ XM_006521421 |
- Peptide Label: | isoform X2 |
- UniProtKB: | B7ZC54 (UniProtKB/TrEMBL), Q9D6L7 (UniProtKB/TrEMBL) |
- Sequence: |
RefSeq Acc Id: | XP_006521482 ⟸ XM_006521419 |
- Peptide Label: | isoform X1 |
- UniProtKB: | B7ZC55 (UniProtKB/TrEMBL), Q9D6L7 (UniProtKB/TrEMBL) |
- Sequence: |
RefSeq Acc Id: | XP_006521483 ⟸ XM_006521420 |
- Peptide Label: | isoform X1 |
- UniProtKB: | B7ZC55 (UniProtKB/TrEMBL), Q9D6L7 (UniProtKB/TrEMBL) |
- Sequence: |
RefSeq Acc Id: | ENSMUSP00000118257 ⟸ ENSMUST00000127957 |
RefSeq Acc Id: | ENSMUSP00000121308 ⟸ ENSMUST00000152949 |
RefSeq Acc Id: | ENSMUSP00000120866 ⟸ ENSMUST00000149569 |
RefSeq Acc Id: | ENSMUSP00000123663 ⟸ ENSMUST00000129468 |
RefSeq Acc Id: | ENSMUSP00000117135 ⟸ ENSMUST00000142405 |
Name | Modeler | Protein Id | AA Range | Protein Structure |
AF-B7ZC55-F1-model_v2 | AlphaFold | B7ZC55 | 1-329 | view protein structure |
RGD ID: | 6825746 | ||||||||
Promoter ID: | MM_KWN:18921 | ||||||||
Type: | Non-CpG | ||||||||
SO ACC ID: | SO:0000170 | ||||||||
Source: | MPROMDB | ||||||||
Tissues & Cell Lines: | MEF_B4 | ||||||||
Transcripts: | ENSMUST00000048285, NM_028010, OTTMUST00000081704, OTTMUST00000081705, OTTMUST00000081706, UC007WMZ.1, UC007WNA.1 | ||||||||
Position: |
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RGD ID: | 8684184 | ||||||||
Promoter ID: | EPDNEW_M20123 | ||||||||
Type: | initiation region | ||||||||
Name: | Apol6_1 | ||||||||
Description: | Mus musculus apolipoprotein L 6 , transcript variant 1, mRNA. | ||||||||
SO ACC ID: | SO:0000170 | ||||||||
Source: | EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/) | ||||||||
Alternative Promoters: | null; see alsoEPDNEW_M20124 | ||||||||
Experiment Methods: | Single-end sequencing. | ||||||||
Position: |
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RGD ID: | 8684186 | ||||||||
Promoter ID: | EPDNEW_M20124 | ||||||||
Type: | single initiation site | ||||||||
Name: | Apol6_2 | ||||||||
Description: | Mus musculus apolipoprotein L 6 , transcript variant 1, mRNA. | ||||||||
SO ACC ID: | SO:0000170 | ||||||||
Source: | EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/) | ||||||||
Alternative Promoters: | null; see alsoEPDNEW_M20123 | ||||||||
Experiment Methods: | Single-end sequencing. | ||||||||
Position: |
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Database | Acc Id | Source(s) |
AGR Gene | MGI:1919189 | AgrOrtholog |
Ensembl Genes | ENSMUSG00000033576 | Ensembl, ENTREZGENE, UniProtKB/TrEMBL |
Ensembl Transcript | ENSMUST00000127957 | ENTREZGENE |
ENSMUST00000127957.8 | UniProtKB/TrEMBL | |
ENSMUST00000129468.8 | UniProtKB/TrEMBL | |
ENSMUST00000142405.8 | UniProtKB/TrEMBL | |
ENSMUST00000149569 | ENTREZGENE | |
ENSMUST00000149569.9 | UniProtKB/TrEMBL | |
ENSMUST00000152949.2 | UniProtKB/TrEMBL | |
InterPro | ApoL | UniProtKB/TrEMBL |
KEGG Report | mmu:71939 | UniProtKB/TrEMBL |
MGD | MGI:1919189 | ENTREZGENE |
NCBI Gene | 71939 | ENTREZGENE |
PANTHER | APOLIPOPROTEIN L6 | UniProtKB/TrEMBL |
PTHR14096 | UniProtKB/TrEMBL | |
Pfam | ApoL | UniProtKB/TrEMBL |
PhenoGen | Apol6 | PhenoGen |
UniProt | B7ZC54 | ENTREZGENE, UniProtKB/TrEMBL |
B7ZC55 | ENTREZGENE, UniProtKB/TrEMBL | |
B7ZC56_MOUSE | UniProtKB/TrEMBL | |
B7ZC57_MOUSE | UniProtKB/TrEMBL | |
D6RFC1_MOUSE | UniProtKB/TrEMBL | |
Q3UN08_MOUSE | UniProtKB/TrEMBL | |
Q9D6L7 | ENTREZGENE, UniProtKB/TrEMBL |