Fam53a (family with sequence similarity 53, member A) - Rat Genome Database

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Gene: Fam53a (family with sequence similarity 53, member A) Mus musculus
Analyze
Symbol: Fam53a
Name: family with sequence similarity 53, member A
RGD ID: 1620744
MGI Page MGI
Description: Predicted to be involved in protein import into nucleus. Predicted to be active in nucleus. Is expressed in genitourinary system. Orthologous to human FAM53A (family with sequence similarity 53 member A).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 2410018C17Rik; 5430419M09Rik; DN; Dntnp; dorsal neural-tube nuclear protein; KIAA4017
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39533,757,695 - 33,787,007 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl533,757,691 - 33,786,979 (-)EnsemblGRCm39 Ensembl
GRCm38533,600,351 - 33,629,675 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl533,600,347 - 33,629,635 (-)EnsemblGRCm38mm10GRCm38
MGSCv37533,943,002 - 33,972,284 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36533,917,210 - 33,946,212 (-)NCBIMGSCv36mm8
Celera531,076,480 - 31,105,755 (-)NCBICelera
Cytogenetic Map5B2NCBI
cM Map517.83NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View
cherubism  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleus  (IBA,ISO)

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11217851   PMID:11984880   PMID:12466851   PMID:12477932   PMID:14610273   PMID:15782199   PMID:16141072  
PMID:16141073   PMID:17967808   PMID:18287559   PMID:18799693   PMID:19334288   PMID:19501082   PMID:21677750   PMID:21873635   PMID:26985665   PMID:38355793  


Genomics

Comparative Map Data
Fam53a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39533,757,695 - 33,787,007 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl533,757,691 - 33,786,979 (-)EnsemblGRCm39 Ensembl
GRCm38533,600,351 - 33,629,675 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl533,600,347 - 33,629,635 (-)EnsemblGRCm38mm10GRCm38
MGSCv37533,943,002 - 33,972,284 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36533,917,210 - 33,946,212 (-)NCBIMGSCv36mm8
Celera531,076,480 - 31,105,755 (-)NCBICelera
Cytogenetic Map5B2NCBI
cM Map517.83NCBI
FAM53A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3841,574,062 - 1,686,017 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl41,617,915 - 1,684,313 (-)EnsemblGRCh38hg38GRCh38
GRCh3741,641,608 - 1,686,040 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3641,611,605 - 1,655,516 (-)NCBINCBI36Build 36hg18NCBI36
Celera41,552,616 - 1,597,093 (-)NCBICelera
Cytogenetic Map4p16.3NCBI
HuRef41,584,548 - 1,628,986 (-)NCBIHuRef
CHM1_141,639,557 - 1,683,765 (-)NCBICHM1_1
T2T-CHM13v2.041,571,319 - 1,683,894 (-)NCBIT2T-CHM13v2.0
Fam53a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81481,308,127 - 81,348,930 (+)NCBIGRCr8
mRatBN7.21477,088,178 - 77,124,395 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1477,090,723 - 77,124,395 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1481,543,001 - 81,576,776 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01482,783,604 - 82,817,307 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01479,228,909 - 79,262,612 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01482,375,086 - 82,416,004 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1482,375,181 - 82,416,004 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01483,064,500 - 83,104,049 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41482,786,786 - 82,821,970 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1476,013,768 - 76,047,520 (+)NCBICelera
Cytogenetic Map14q21NCBI
Fam53a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955514914,325 - 947,738 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955514917,344 - 947,729 (-)NCBIChiLan1.0ChiLan1.0
FAM53A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v231,965,916 - 2,019,679 (-)NCBINHGRI_mPanPan1-v2
PanPan1.1 Ensembl41,647,466 - 1,722,938 (-)Ensemblpanpan1.1panPan2
FAM53A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1362,410,101 - 62,441,189 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl362,424,613 - 62,447,948 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha364,931,915 - 64,965,315 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0362,889,429 - 62,923,018 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl362,898,381 - 62,916,586 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1362,383,129 - 62,416,466 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0362,586,648 - 62,620,024 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0362,945,890 - 62,979,264 (+)NCBIUU_Cfam_GSD_1.0
Fam53a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440528567,980,928 - 68,017,920 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647721,692,283 - 21,719,860 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647721,688,240 - 21,719,612 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FAM53A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl8776,661 - 795,695 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.18777,081 - 796,383 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
FAM53A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12747,105,860 - 47,131,400 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2747,089,353 - 47,131,749 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660513,465,641 - 3,510,184 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Fam53a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475525,713,444 - 25,760,911 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475525,727,989 - 25,760,774 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:3812
Count of miRNA genes:947
Interacting mature miRNAs:1355
Transcripts:ENSMUST00000045329, ENSMUST00000065119, ENSMUST00000065162, ENSMUST00000137705, ENSMUST00000140043, ENSMUST00000150033, ENSMUST00000153696, ENSMUST00000155980
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301555Alcp10_malcohol preference locus 10 (mouse)Not determined53102427565024480Mouse
4140990Lgq6_mlate growth QTL 6 (mouse)Not determined32133234100777931Mouse
10043995Hbnr9_mHeligmosomoides bakeri nematode resistance 9 (mouse)Not determined53348866767488876Mouse
1301776Skts3_mskin tumor susceptibility 3 (mouse)Not determined52166729555667403Mouse
1301685Estq2_mestradiol regulated response QTL 2 (mouse)Not determined51563408449634190Mouse
11537367Hmtb11_mhemostasis and thrombosis 11 (mouse)52210082364806579Mouse
4141207Imrfq1_mimmune response to Factor IX QTL 1 (mouse)Not determined5812411742124239Mouse
11537368Hmtb10_mhemostasis and thrombosis 10 (mouse)52210082354500318Mouse
1301403Alcp9_malcohol preference locus 9 (mouse)Not determined53102427565024480Mouse
15039371Nmrs21_mNAFLD-associated magnetic resonance shift 21 (mouse)5350482337504823Mouse
1301693Sle6_msystemic lupus erythematosus susceptibility 6 (mouse)Not determined5889069387841837Mouse
1300701Cd8ts1_mCD8 T cell subset 1 (mouse)Not determined52721534861215451Mouse
11353827Hplq1_mhot plate latency 1 (mouse)53157045865570458Mouse
1357478Kdnw1_mkidney weight 1 (mouse)Not determined5891594940529869Mouse
11341716Rvfs3_mRift Valley fever susceptibility 3 (mouse)526441234138455402Mouse
14696730Kidlq1_mkidney weight, left QTL 1 (mouse)51356315247563152Mouse
10401122Pgia41_mproteoglycan induced arthritis 41 (mouse)Not determined582314434823280Mouse
1300719Iba5_minduction of brown adipocytes 5 (mouse)Not determined52068699354687134Mouse
4141219W10q16_mweight 10 weeks QTL 16 (mouse)Not determined32133234100777931Mouse
1301806Actd2_mactivity-distance traveled 2 (mouse)Not determined5538452039384652Mouse


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001359461 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001359462 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001359463 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_178390 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011240776 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036165566 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC132233 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF396665 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK010537 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK017321 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK086386 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK155077 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK163326 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK179669 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK184411 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK185592 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK185935 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK186003 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK195761 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK215806 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK220276 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BB848576 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC016596 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC028656 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466524 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FO715067 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000045329   ⟹   ENSMUSP00000045539
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl533,757,700 - 33,786,966 (-)Ensembl
GRCm38.p6 Ensembl533,600,356 - 33,629,622 (-)Ensembl
Ensembl Acc Id: ENSMUST00000065119   ⟹   ENSMUSP00000070770
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl533,757,691 - 33,786,979 (-)Ensembl
GRCm38.p6 Ensembl533,600,347 - 33,629,635 (-)Ensembl
Ensembl Acc Id: ENSMUST00000065162   ⟹   ENSMUSP00000069521
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl533,757,700 - 33,786,256 (-)Ensembl
GRCm38.p6 Ensembl533,600,356 - 33,628,912 (-)Ensembl
Ensembl Acc Id: ENSMUST00000137705   ⟹   ENSMUSP00000121667
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl533,765,559 - 33,786,927 (-)Ensembl
GRCm38.p6 Ensembl533,608,215 - 33,629,583 (-)Ensembl
Ensembl Acc Id: ENSMUST00000140043
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl533,772,159 - 33,786,949 (-)Ensembl
GRCm38.p6 Ensembl533,614,815 - 33,629,605 (-)Ensembl
Ensembl Acc Id: ENSMUST00000150033   ⟹   ENSMUSP00000117350
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl533,757,700 - 33,786,932 (-)Ensembl
GRCm38.p6 Ensembl533,600,356 - 33,629,588 (-)Ensembl
Ensembl Acc Id: ENSMUST00000153696   ⟹   ENSMUSP00000118139
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl533,765,732 - 33,786,943 (-)Ensembl
GRCm38.p6 Ensembl533,608,388 - 33,629,599 (-)Ensembl
Ensembl Acc Id: ENSMUST00000155980   ⟹   ENSMUSP00000120786
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl533,767,804 - 33,786,406 (-)Ensembl
GRCm38.p6 Ensembl533,610,460 - 33,629,062 (-)Ensembl
RefSeq Acc Id: NM_001359461   ⟹   NP_001346390
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39533,757,697 - 33,784,855 (-)NCBI
GRCm38533,600,353 - 33,627,511 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001359462   ⟹   NP_001346391
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39533,757,697 - 33,786,979 (-)NCBI
GRCm38533,600,353 - 33,629,635 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001359463   ⟹   NP_001346392
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39533,757,697 - 33,786,979 (-)NCBI
GRCm38533,600,353 - 33,629,635 (-)NCBI
Sequence:
RefSeq Acc Id: NM_178390   ⟹   NP_848477
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39533,757,697 - 33,786,979 (-)NCBI
GRCm38533,600,353 - 33,629,635 (-)NCBI
MGSCv37533,943,002 - 33,972,284 (-)RGD
Celera531,076,480 - 31,105,755 (-)RGD
cM Map5 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_011240776   ⟹   XP_011239078
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39533,757,695 - 33,787,007 (-)NCBI
GRCm38533,600,351 - 33,629,675 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036165566   ⟹   XP_036021459
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39533,757,695 - 33,786,775 (-)NCBI
Sequence:
RefSeq Acc Id: NP_848477   ⟸   NM_178390
- Peptide Label: isoform a
- UniProtKB: Q91VG1 (UniProtKB/Swiss-Prot),   Q8R5K1 (UniProtKB/Swiss-Prot),   Q8R2K2 (UniProtKB/Swiss-Prot),   E9PV82 (UniProtKB/Swiss-Prot),   Q8CEP3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011239078   ⟸   XM_011240776
- Peptide Label: isoform X1
- UniProtKB: Q91VG1 (UniProtKB/Swiss-Prot),   Q8R5K1 (UniProtKB/Swiss-Prot),   Q8R2K2 (UniProtKB/Swiss-Prot),   E9PV82 (UniProtKB/Swiss-Prot),   Q8CEP3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001346392   ⟸   NM_001359463
- Peptide Label: isoform b
- UniProtKB: Q3U2V9 (UniProtKB/TrEMBL),   Q8CEP3 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001346391   ⟸   NM_001359462
- Peptide Label: isoform a
- UniProtKB: Q91VG1 (UniProtKB/Swiss-Prot),   Q8R5K1 (UniProtKB/Swiss-Prot),   Q8R2K2 (UniProtKB/Swiss-Prot),   E9PV82 (UniProtKB/Swiss-Prot),   Q8CEP3 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001346390   ⟸   NM_001359461
- Peptide Label: isoform a
- UniProtKB: Q91VG1 (UniProtKB/Swiss-Prot),   Q8R5K1 (UniProtKB/Swiss-Prot),   Q8R2K2 (UniProtKB/Swiss-Prot),   E9PV82 (UniProtKB/Swiss-Prot),   Q8CEP3 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSMUSP00000117350   ⟸   ENSMUST00000150033
Ensembl Acc Id: ENSMUSP00000069521   ⟸   ENSMUST00000065162
Ensembl Acc Id: ENSMUSP00000070770   ⟸   ENSMUST00000065119
Ensembl Acc Id: ENSMUSP00000045539   ⟸   ENSMUST00000045329
Ensembl Acc Id: ENSMUSP00000118139   ⟸   ENSMUST00000153696
Ensembl Acc Id: ENSMUSP00000121667   ⟸   ENSMUST00000137705
Ensembl Acc Id: ENSMUSP00000120786   ⟸   ENSMUST00000155980
RefSeq Acc Id: XP_036021459   ⟸   XM_036165566
- Peptide Label: isoform X2
- UniProtKB: Q3U2V9 (UniProtKB/TrEMBL),   Q8CEP3 (UniProtKB/TrEMBL)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-E9PV82-F1-model_v2 AlphaFold E9PV82 1-402 view protein structure

Promoters
RGD ID:6886424
Promoter ID:EPDNEW_M6663
Type:initiation region
Name:Fam53a_1
Description:Mus musculus family with sequence similarity 53, member A , transcriptvariant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38533,629,599 - 33,629,659EPDNEW
RGD ID:6837488
Promoter ID:MM_KWN:41919
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Liver
Transcripts:ENSMUST00000101361
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36533,951,171 - 33,951,671 (-)MPROMDB
RGD ID:6837498
Promoter ID:MM_KWN:41920
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000045329,   ENSMUST00000065162,   ENSMUST00000065707,   OTTMUST00000061699,   OTTMUST00000061723,   OTTMUST00000061724,   OTTMUST00000061725,   OTTMUST00000061727,   OTTMUST00000061728
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36533,970,836 - 33,972,702 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1919225 AgrOrtholog
Ensembl Genes ENSMUSG00000037339 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000045329 ENTREZGENE
  ENSMUST00000045329.10 UniProtKB/Swiss-Prot
  ENSMUST00000065119 ENTREZGENE
  ENSMUST00000065119.15 UniProtKB/Swiss-Prot
  ENSMUST00000065162.11 UniProtKB/TrEMBL
  ENSMUST00000137705.8 UniProtKB/TrEMBL
  ENSMUST00000150033.8 UniProtKB/TrEMBL
  ENSMUST00000153696.8 UniProtKB/TrEMBL
  ENSMUST00000155980.2 UniProtKB/TrEMBL
InterPro FAM53 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:74504 UniProtKB/Swiss-Prot
MGD MGI:1919225 ENTREZGENE
NCBI Gene Fam53a ENTREZGENE
PANTHER PROTEIN FAM53A UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR28567 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam FAM53 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Fam53a PhenoGen
UniProt D3YUF6_MOUSE UniProtKB/TrEMBL
  D3YZ55_MOUSE UniProtKB/TrEMBL
  D6REV4_MOUSE UniProtKB/TrEMBL
  E9PV65_MOUSE UniProtKB/TrEMBL
  E9PV82 ENTREZGENE, UniProtKB/Swiss-Prot
  Q3U2V9 ENTREZGENE, UniProtKB/TrEMBL
  Q571B3_MOUSE UniProtKB/TrEMBL
  Q8CEP3 ENTREZGENE, UniProtKB/TrEMBL
  Q8R2K2 ENTREZGENE
  Q8R5K1 ENTREZGENE
  Q91VG1 ENTREZGENE
UniProt Secondary Q8R2K2 UniProtKB/Swiss-Prot
  Q8R5K1 UniProtKB/Swiss-Prot
  Q91VG1 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2024-08-26 Fam53a  family with sequence similarity 53, member A  2410018C17Rik  RIKEN cDNA 2410018C17 gene  Symbol and/or name updated 27372883 PROVISIONAL
2024-08-21 2410018C17Rik  RIKEN cDNA 2410018C17 gene  Fam53a  family with sequence similarity 53, member A  Symbol and/or name change 5135510 APPROVED