1700057G04Rik (RIKEN cDNA 1700057G04 gene) - Rat Genome Database
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Gene: 1700057G04Rik (RIKEN cDNA 1700057G04 gene) Mus musculus
Analyze
No known orthologs.
Symbol: 1700057G04Rik
Name: RIKEN cDNA 1700057G04 gene
RGD ID: 1620713
MGI Page MGI
Description: Predicted to have phospholipid scramblase activity. Predicted to be involved in plasma membrane phospholipid scrambling. Predicted to localize to plasma membrane. Orthologous to several human genes including PLSCR1 (phospholipid scramblase 1).
Type: protein-coding
RefSeq Status: PREDICTED
Also known as: hypothetical protein LOC78459; novel Plsrc protein; RP23-21J17.1; uncharacterized protein LOC78459
RGD Orthologs
Alliance Genes
More Info homologs ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39992,191,379 - 92,239,929 (+)NCBIGRCm39mm39
GRCm38992,309,326 - 92,357,876 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl992,309,377 - 92,357,876 (+)EnsemblGRCm38mm10GRCm38
MGSCv37992,204,215 - 92,252,714 (+)NCBIGRCm37mm9NCBIm37
MGSCv36992,113,148 - 92,161,647 (+)NCBImm8
Celera991,897,265 - 91,952,913 (+)NCBICelera
Cytogenetic Map9E3.3NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
1. RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:16141072   PMID:16141073   PMID:21873635  


Genomics


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
12904947Tammq7_mtibialis anterior muscle mass QTL 7 (mouse)991683173124595110Mouse
13463474Hbbcq5_mhemoglobin concentration QTL 5 (mouse)991641084124595110Mouse
10054068El8_mepilepsy 8 (mouse)Not determined972977005106977152Mouse
1357461Idd2_minsulin dependent diabetes susceptibility 2 (mouse)Not determined982910333116910428Mouse
1301192Skts6_mskin tumor susceptibility 6 (mouse)Not determined978640645112640755Mouse
13463477Rbc9_mred blood cell count 9 (mouse)991641084124595110Mouse
1357635Splq4_mspleen weight QTL 4 (mouse)Not determined963332429120362868Mouse
1301241Renf1_mrenal failure 1 (mouse)Not determined95212317899910428Mouse
1301172Fembrs6_mfemur breaking strength 6 (mouse)Not determined95911710593117252Mouse
4142042Alpq3_malcohol preference QTL 3 (mouse)Not determined93739490198819654Mouse
5491195Mobq8_mmultigenic obesity QTL 8 (mouse)Not determined95946266493462846Mouse
1300549Bbaa17_mB. burgdorferi-associated arthritis 17 (mouse)Not determined986230401120230530Mouse
1558767Skmw11_mskeletal muscle weight 11 (mouse)Not determined991641084124595110Mouse
10045638Heal29_mwound healing/regeneration 29 (mouse)Not determined967124167101124167Mouse
12910773Splic3_mspleen iron content 3 (mouse)991413879124595110Mouse
1301803Stheal9_msoft tissue heal 9 (mouse)Not determined95911710593117252Mouse
4141545Tailaq2_mtail length adjusted QTL 2 (mouse)Not determined63332429120362868Mouse
1357610Vtbt8_mvertebral trabecular bone trait 8 (mouse)Not determined968897510102897652Mouse
1301732Char1_mP. chabaudi malaria resistance QTL 1 (mouse)Not determined981798268115798392Mouse
1301611Lrnx3_mlearning contextual 3 (mouse)Not determined96224248596242599Mouse
1301407Rapop2_mradiation-induced apoptosis 2 (mouse)Not determined976535936110536130Mouse
1301725Lifespan1_mlife span 1 (mouse)Not determined974368177108368325Mouse
1301456Adip5_madiposity 5 (mouse)Not determined95946266493462846Mouse
12910770Splic1_mspleen iron content 1 (mouse)991413879124595110Mouse
1301573Etohcta8_methanol conditioned taste aversion 8 (mouse)Not determined972977005106977152Mouse
12904937Edlmmq9_mextensor digitorum longus muscle mass QTL 9 (mouse)991683173124595110Mouse
1300848Skull13_mskull morphology 13 (mouse)Not determined95946266493462846Mouse
4141833W10q13_mweight 10 weeks QTL 13 (mouse)Not determined63332429120362868Mouse
13463478Mchq18_mmean corpuscular hemoglobin QTL 18 (mouse)991641084124595110Mouse
13207569Tcq13_mtotal cholesterol QTL 13 (mouse)959990000109260000Mouse
1301636Lith5_mlithogenic gene 5 (mouse)Not determined966207024100207122Mouse
10054492El7_mepilepsy 7 (mouse)Not determined975775364114474379Mouse
12910772Lvic6_mliver iron content 6 (mouse)991413879124595110Mouse
1302103Dob2_mdietary obesity 2 (mouse)Not determined986239845120289624Mouse
10766454Char10_mP. chabaudi malaria resistance QTL 10 (mouse)982910333116910428Mouse
1357657Pymr_mPlasmodium yoelli malaria resistance (mouse)Not determined989977005118938021Mouse
11081165Psl6_mpromotion susceptibility QTL 6 (mouse)96513390995640755Mouse
10412242Alpq8_malcohol preference QTL 8 (mouse)Not determined989284925123284925Mouse
1301302Pas4_mpulmonary adenoma susceptibility 4 (mouse)Not determined969239845103239920Mouse
12904961Gmmq7_mgastrocnemius muscle mass QTL 7 (mouse)991683173124595110Mouse
13463480Mchcq2_mmean corpuscular hemoglobin concentration QTL 2 (mouse)991641084124595110Mouse
10412174Habiir4_mhyperoxic acute lung injury imprinted region 4 (mouse)Not determined96936046598819654Mouse
10401247Bglu14_mblood glucose level 14 (mouse)Not determined979397810113397888Mouse
1301621Hpic1_mhaloperidol-induced catalepsy 1 (mouse)Not determined969546513103546645Mouse
1300884Sluc11_msusceptibility to lung cancer 11 (mouse)Not determined982910333116910428Mouse
1302065El1_mepilepsy 1 (mouse)Not determined975775364114474379Mouse
18182932Metl3_mmetabolite locus 3, N-acetylglutamate (mouse)989563342123563342Mouse
1301869Tbbmd4_mtotal body bone mineral density 4 (mouse)Not determined976117105101528921Mouse
11251716Siim2_mstress induced immobility 2 (mouse)986748483120748483Mouse
12880422V25Dq6_mvitamin D inactive form serum level QTL 6 (mouse)987800000121800000Mouse
1301487Nociq1_mnociceptive sensitivity inflammatory QTL 1 (mouse)Not determined984528818118528921Mouse
1301924Bmd10_mbone mineral density 10 (mouse)Not determined968897510102897652Mouse
10412180Msam3_mmuscle, skeletal, activity measure 3 (mouse)Not determined985897510108641186Mouse
1301649Psl1_mpromotion susceptibility QTL 1 (mouse)Not determined989412277123412396Mouse
13463475Hctq7_mhematocrit QTL 7 (mouse)991641084124595110Mouse
4141224Dxmod_mdoxorubicin nephropathy modifier (mouse)Not determined49541121101528921Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:326
Count of miRNA genes:286
Interacting mature miRNAs:299
Transcripts:ENSMUST00000098477, ENSMUST00000126606, ENSMUST00000134712, ENSMUST00000135182, ENSMUST00000150594
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000098477   ⟹   ENSMUSP00000096077
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl992,309,377 - 92,357,876 (+)Ensembl
RefSeq Acc Id: ENSMUST00000126606
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl992,309,377 - 92,327,114 (+)Ensembl
RefSeq Acc Id: ENSMUST00000134712
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl992,309,408 - 92,351,071 (+)Ensembl
RefSeq Acc Id: ENSMUST00000135182   ⟹   ENSMUSP00000140686
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl992,351,085 - 92,357,876 (+)Ensembl
RefSeq Acc Id: ENSMUST00000150594   ⟹   ENSMUSP00000117673
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl992,309,377 - 92,343,683 (+)Ensembl
RefSeq Acc Id: ENSMUST00000185580   ⟹   ENSMUSP00000139734
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl992,343,505 - 92,357,819 (+)Ensembl
RefSeq Acc Id: NM_001033184   ⟹   NP_001028356
RefSeq Status: PREDICTED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39992,191,430 - 92,239,929 (+)NCBI
GRCm38992,309,377 - 92,357,876 (+)NCBI
MGSCv37992,204,215 - 92,252,714 (+)RGD
Celera991,897,265 - 91,952,913 (+)RGD
cM Map9 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_011242837   ⟹   XP_011241139
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39992,191,381 - 92,239,926 (+)NCBI
GRCm38992,309,328 - 92,357,873 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011242838   ⟹   XP_011241140
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39992,191,379 - 92,239,926 (+)NCBI
GRCm38992,309,326 - 92,357,873 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011242839   ⟹   XP_011241141
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39992,225,672 - 92,239,926 (+)NCBI
GRCm38992,343,619 - 92,357,873 (+)NCBI
Sequence:
RefSeq Acc Id: XR_001779073
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39992,191,385 - 92,239,926 (+)NCBI
GRCm38992,309,332 - 92,357,873 (+)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: NP_001028356   ⟸   NM_001033184
- UniProtKB: Q3V0U0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011241140   ⟸   XM_011242838
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_011241139   ⟸   XM_011242837
- Peptide Label: isoform X1
- UniProtKB: Q3V0U0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011241141   ⟸   XM_011242839
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSMUSP00000117673   ⟸   ENSMUST00000150594
RefSeq Acc Id: ENSMUSP00000139734   ⟸   ENSMUST00000185580
RefSeq Acc Id: ENSMUSP00000140686   ⟸   ENSMUST00000135182
RefSeq Acc Id: ENSMUSP00000096077   ⟸   ENSMUST00000098477

Promoters
RGD ID:8670444
Promoter ID:EPDNEW_M13253
Type:initiation region
Name:1700057G04Rik_1
Description:Mus musculus RIKEN cDNA 1700057G04 gene , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38992,309,377 - 92,309,437EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1925709 AgrOrtholog
Ensembl Genes ENSMUSG00000074139 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000096077 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSP00000117673 UniProtKB/TrEMBL
  ENSMUSP00000139734 UniProtKB/TrEMBL
  ENSMUSP00000140686 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000098477 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUST00000135182 UniProtKB/TrEMBL
  ENSMUST00000150594 UniProtKB/TrEMBL
  ENSMUST00000185580 UniProtKB/TrEMBL
InterPro Scramblase UniProtKB/TrEMBL
  Tubby_C-like UniProtKB/TrEMBL
KEGG Report mmu:78459 UniProtKB/TrEMBL
MGD MGI:1925709 ENTREZGENE
NCBI Gene 78459 ENTREZGENE
PANTHER PTHR23248 UniProtKB/TrEMBL
Pfam Scramblase UniProtKB/TrEMBL
PhenoGen 1700057G04Rik PhenoGen
Superfamily-SCOP SSF54518 UniProtKB/TrEMBL
UniGene Mm.179195 ENTREZGENE
UniProt A0A087WPD9_MOUSE UniProtKB/TrEMBL
  A0A087WRL7_MOUSE UniProtKB/TrEMBL
  B1B193_MOUSE UniProtKB/TrEMBL
  Q3V0U0 ENTREZGENE, UniProtKB/TrEMBL