1700123L14Rik (RIKEN cDNA 1700123L14 gene) - Rat Genome Database
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Gene: 1700123L14Rik (RIKEN cDNA 1700123L14 gene) Mus musculus
Analyze
No known orthologs.
Symbol: 1700123L14Rik
Name: RIKEN cDNA 1700123L14 gene
RGD ID: 1620707
MGI Page MGI
Description:
Type: pseudo
RefSeq Status: PROVISIONAL
Also known as: MGC176152; Npap60; Nup50
RGD Orthologs
Alliance Genes
More Info homologs ...
Related Functional Gene: Nup50  
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39696,141,484 - 96,143,186 (-)NCBIGRCm39mm39
GRCm39 Ensembl696,141,478 - 96,143,224 (-)Ensembl
GRCm38696,164,503 - 96,166,205 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl696,164,497 - 96,166,243 (-)EnsemblGRCm38mm10GRCm38
MGSCv37696,114,497 - 96,116,199 (-)NCBIGRCm37mm9NCBIm37
MGSCv36696,129,966 - 96,131,668 (-)NCBImm8
Celera698,042,756 - 98,044,458 (-)NCBICelera
Cytogenetic Map6D3NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

References

References - curated
1. RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:16141072   PMID:16141073   PMID:21267068   PMID:21873635  


Genomics


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301876Bits2_mbitterness sensitivity 2 (mouse)Not determined670425898104426034Mouse
1301244Ichs_mimmediate cutaneous hypersensitivity QTL (mouse)Not determined690795610124795846Mouse
10043864T2dm4sa_mtype 2 diabetes mellitus 4 in SMXA RI mice (mouse)Not determined683713869147052561Mouse
1301813Skl3_mskeletal size (tail length) 3 (mouse)Not determined670425898104426034Mouse
1300954Fcsa1_mfemoral cross-sectional area 1 (mouse)Not determined671981024105981170Mouse
13824985Alh1_mamplitude of lateral head displacement 1 (mouse)67800000097000000Mouse
25440480Moaq2_mmodifier of alien QTL 2 (mouse)61117500000Mouse
10412208Cypr4_mcytokine production 4 (mouse)Not determined675716503109716697Mouse
25314319Histh6_mhistamine hypersensitivity 6 (mouse)648720000125360000Mouse
4142361W10q11_mweight 10 weeks QTL 11 (mouse)Not determined450382396656149Mouse
13506930Recrq9_mrecombination rate in male meiosis QTL 9 (mouse)673500000134700000Mouse
4142271Egq8_mearly growth QTL 8 (mouse)Not determined450382396656149Mouse
1301369Im4_mimmunoregulatory 4 (mouse)Not determined66348473897484905Mouse
11532719Sluc45_msusceptibility to lung cancer 45 (mouse)69260730698258933Mouse
4141578Obrq1_mobesity resistance QTL 1 (mouse)Not determined92607306112004738Mouse
1301262Gasa3_mgastritis type A susceptibility locus 3 (mouse)Not determined689005405123005603Mouse
1300650Bw18_mbody weight QTL 18 (mouse)Not determined666713869100714031Mouse
11353842Bmiq4_mbody mass index QTL 4 (mouse)692607306146429238Mouse
1357683Igf1sl1_mIGF-1 serum levels 1 (mouse)Not determined652161713116155267Mouse
1301687Mnic2_mmacronutrient intake (mouse)Not determined686806805113544602Mouse
4142259Tabw2_mtally ho associated body weight 2 (mouse)Not determined46935985136423692Mouse
1301320Ots1_movarian teratoma susceptibility 1 (mouse)Not determined675447583104503555Mouse
1301744Hdlq11_mHDL QTL 11 (mouse)Not determined687503360121503555Mouse
1301034Egrm2_mearly growth rate (mouse)Not determined670425898104426034Mouse
1300869Stheal5_msoft tissue heal 5 (mouse)Not determined671575060105575178Mouse
4142232W6q4_mweight 6 weeks QTL 4 (mouse)Not determined450382396656149Mouse
4141376Dbm1_mdiabetes modifier 1 (mouse)Not determined678629504121115387Mouse
14696731Pairq1_mP. aeruginosa infection resistance QTL 1 (mouse)681500000102200000Mouse
26884414Bzwq12_mbi-zygomatic width QTL 12, 16 week (mouse)63400000139100000Mouse
10043901Pfat5_mpredicted fat percentage 5 (mouse)Not determined675607306109607450Mouse
11251720Ewc4_methanol withdrawal and consumption 4 (mouse)684122513118122513Mouse
4142126W3q3_mweight 3 weeks QTL 3 (mouse)Not determined450382396656149Mouse
1301521Pas1c_mpulmonary adenoma susceptibility 1c (mouse)Not determined671981024105981170Mouse
25314320Histh5_mhistamine hypersensitivity 5 (mouse)648720000148450000Mouse
10412157Fl1n_mfatty liver 1 in NSY (mouse)Not determined645314059128835032Mouse
1301292Cfbw2_mcystic fibrosis body weight 2 (mouse)Not determined695004651129004738Mouse
1301962Eila2_methanol induced locomotor activity 2 (mouse)Not determined648726556125356785Mouse
1357875Pfat2_mpredicted fat percentage 2 (mouse)Not determined676463949110464093Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:109
Count of miRNA genes:99
Interacting mature miRNAs:104
Transcripts:ENSMUST00000090061
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000090061   ⟹   ENSMUSP00000087515
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl696,164,497 - 96,166,243 (-)Ensembl
RefSeq Acc Id: NR_003643
RefSeq Status: PROVISIONAL
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39696,141,484 - 96,143,186 (-)NCBI
GRCm38696,164,503 - 96,166,205 (-)ENTREZGENE
MGSCv37696,114,497 - 96,116,199 (-)RGD
Celera698,042,756 - 98,044,458 (-)RGD
cM Map6 ENTREZGENE
Sequence:
Protein Sequences
GenBank Protein BAB31500 (Get FASTA)   NCBI Sequence Viewer  
  BAE20790 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: ENSMUSP00000087515   ⟸   ENSMUST00000090061
Protein Domains
RanBD1

Promoters
RGD ID:6890508
Promoter ID:EPDNEW_M8705
Type:initiation region
Name:1700123L14Rik_1
Description:Mus musculus RIKEN cDNA 1700123L14 gene , non-coding RNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38696,166,256 - 96,166,316EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1925732 AgrOrtholog
Ensembl Genes ENSMUSG00000072878 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000087515 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000090061 ENTREZGENE, UniProtKB/TrEMBL
Gene3D-CATH 2.30.29.30 UniProtKB/TrEMBL
InterPro NUP2/50/61 UniProtKB/TrEMBL
  PH_type UniProtKB/TrEMBL
  RanBP UniProtKB/TrEMBL
MGD MGI:1925732 ENTREZGENE
NCBI Gene 78482 ENTREZGENE
Pfam NUP50 UniProtKB/TrEMBL
  Ran_BP1 UniProtKB/TrEMBL
PhenoGen 1700123L14Rik PhenoGen
PROSITE RANBD1 UniProtKB/TrEMBL
SMART RanBD UniProtKB/TrEMBL
UniProt Q3V2K7_MOUSE UniProtKB/TrEMBL