Vmn1r56 (vomeronasal 1 receptor 56) - Rat Genome Database

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Gene: Vmn1r56 (vomeronasal 1 receptor 56) Mus musculus
Analyze
Symbol: Vmn1r56
Name: vomeronasal 1 receptor 56
RGD ID: 1620702
MGI Page MGI
Description: INTERACTS WITH 1,2-dichloroethane; 1,2-dimethylhydrazine; dextran sulfate
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: pheromone receptor V3R3; V1r; V1rd3; V3; V3R3; vomernasal 1 receptor Vmn1r56; vomeronasal 1 receptor Vmn1r56; vomeronasal 1 receptor, D3
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3975,197,915 - 5,199,746 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl75,197,915 - 5,199,746 (-)EnsemblGRCm39 Ensembl
GRCm3875,194,916 - 5,196,747 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl75,194,916 - 5,196,747 (-)EnsemblGRCm38mm10GRCm38
MGSCv3775,146,518 - 5,148,349 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3674,798,003 - 4,799,834 (-)NCBIMGSCv36mm8
Celera74,943,096 - 4,944,927 (-)NCBICelera
Cytogenetic Map7A1NCBI
cM Map73.01NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:11163270   PMID:11802169   PMID:15081110   PMID:19952141   PMID:20003482   PMID:21873635  


Genomics

Variants

.
Variants in Vmn1r56
45 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:189
Count of miRNA genes:169
Interacting mature miRNAs:173
Transcripts:ENSMUST00000169556
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301177Vent3_mventricular size 3 (mouse)Not determined7120511925Mouse
10054067Sle20_msystematic lupus erythematosus susceptibility 20 (mouse)Not determined7120511925Mouse
1302188Lxw6_mlupus BXSB x NZW 6 (mouse)Not determined7121698146Mouse
12904941Edlmmq6_mextensor digitorum longus muscle mass QTL 6 (mouse)7121821047Mouse
12904948Tammq5_mtibialis anterior muscle mass QTL 5 (mouse)7121821047Mouse
12904953Gmmq5_mgastrocnemius muscle mass QTL 5 (mouse)7121821047Mouse
1301572Sluc30_msusceptibility to lung cancer 30 (mouse)Not determined7243169636431844Mouse
1302115Abhr3_mallergen-induced bronchial hyperresponsiveness 3 (mouse)Not determined7331599616637423Mouse
1301115Lrdm1_mlymphoproliferation (Fas) renal disease modifier 1 (mouse)Not determined7335204824879418Mouse
1300722Sle3_msystemic lupus erythmatosus susceptibility 3 (mouse)Not determined7351172887142720Mouse
25394570Skmw58_mskeletal muscle weight 58, TA (mouse)735524286281481Mouse
38501068Tip1_mtuberculosis immunophenotype 1, spleen CFU (mouse)7360299972549748Mouse
25394569Skmw57_mskeletal muscle weight 57, gastroc (mouse)7458046916687861Mouse

Markers in Region
UniSTS:493174  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3875,195,684 - 5,196,645UniSTSGRCm38
GRCm3875,883,580 - 5,884,542UniSTSGRCm38
MGSCv3775,835,182 - 5,836,144UniSTSGRCm37
MGSCv3775,147,286 - 5,148,247UniSTSGRCm37
Celera75,625,530 - 5,626,492UniSTS
Celera74,943,864 - 4,944,825UniSTS
Cytogenetic Map7A1UniSTS


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000169556   ⟹   ENSMUSP00000128821
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl75,197,915 - 5,199,746 (-)Ensembl
GRCm38.p6 Ensembl75,194,916 - 5,196,747 (-)Ensembl
RefSeq Acc Id: NM_030740   ⟹   NP_109665
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3975,197,915 - 5,199,746 (-)NCBI
GRCm3875,194,916 - 5,196,747 (-)ENTREZGENE
MGSCv3775,146,518 - 5,148,349 (-)RGD
Celera74,943,096 - 4,944,927 (-)RGD
cM Map7 ENTREZGENE
Sequence:
Protein Sequences
Protein RefSeqs NP_109665 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAG49372 (Get FASTA)   NCBI Sequence Viewer  
  EDL31292 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000128821
  ENSMUSP00000128821.2
Reference Protein Sequences
RefSeq Acc Id: NP_109665   ⟸   NM_030740
- UniProtKB: Q9EPS9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000128821   ⟸   ENSMUST00000169556
Protein Domains
G-protein coupled receptors family 1 profile

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9EPS9-F1-model_v2 AlphaFold Q9EPS9 1-310 view protein structure


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000091874 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000169556 ENTREZGENE
  ENSMUST00000169556.3 UniProtKB/TrEMBL
Gene3D-CATH Rhodopsin 7-helix transmembrane proteins UniProtKB/TrEMBL
InterPro GPCR_Rhodpsn_supfam UniProtKB/TrEMBL
  Vmron_rcpt_1 UniProtKB/TrEMBL
KEGG Report mmu:81015 UniProtKB/TrEMBL
MGD MGI:3033472 ENTREZGENE
NCBI Gene 81015 ENTREZGENE
PANTHER PTHR24062 UniProtKB/TrEMBL
  VOMERONASAL TYPE-1 RECEPTOR UniProtKB/TrEMBL
Pfam V1R UniProtKB/TrEMBL
PhenoGen Vmn1r56 PhenoGen
PROSITE G_PROTEIN_RECEP_F1_2 UniProtKB/TrEMBL
Superfamily-SCOP Family A G protein-coupled receptor-like UniProtKB/TrEMBL
UniProt Q9EPS9 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2011-07-27 Vmn1r56  vomeronasal 1 receptor 56  V1rd3  vomeronasal 1 receptor, D3  Symbol and/or name change 5135510 APPROVED