Snora62 (small nucleolar RNA, H/ACA box 62) - Rat Genome Database
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Gene: Snora62 (small nucleolar RNA, H/ACA box 62) Mus musculus
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Symbol: Snora62
Name: small nucleolar RNA, H/ACA box 62
RGD ID: 1620677
MGI Page MGI
Description: Predicted to localize to small nucleolar ribonucleoprotein complex. Orthologous to human SNORA62 (small nucleolar RNA, H/ACA box 62); INTERACTS WITH fluoranthene; butanal (ortholog); N-methyl-N'-nitro-N-nitrosoguanidine (ortholog).
Type: snorna
RefSeq Status: VALIDATED
Also known as: E2; MBI-13; MBI-136; Rnu1; Rnu108
RGD Orthologs
Human
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399119,959,500 - 119,959,629 (+)NCBIGRCm39mm39
GRCm389120,130,434 - 120,130,563 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9120,130,415 - 120,130,563 (+)EnsemblGRCm38mm10GRCm38
MGSCv379120,039,552 - 120,039,681 (+)NCBIGRCm37mm9NCBIm37
MGSCv369119,979,132 - 119,979,261 (+)NCBImm8
Celera9120,599,245 - 120,599,374 (+)NCBICelera
Cytogenetic Map9F4NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References

References - curated
1. RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:9092667   PMID:11387227  


Genomics

Comparative Map Data
Snora62
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399119,959,500 - 119,959,629 (+)NCBIGRCm39mm39
GRCm389120,130,434 - 120,130,563 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9120,130,415 - 120,130,563 (+)EnsemblGRCm38mm10GRCm38
MGSCv379120,039,552 - 120,039,681 (+)NCBIGRCm37mm9NCBIm37
MGSCv369119,979,132 - 119,979,261 (+)NCBImm8
Celera9120,599,245 - 120,599,374 (+)NCBICelera
Cytogenetic Map9F4NCBI
SNORA62
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl339,411,054 - 39,411,206 (+)EnsemblGRCh38hg38GRCh38
GRCh38339,411,054 - 39,411,207 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh37339,452,545 - 39,452,698 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36339,427,549 - 39,427,702 (+)NCBINCBI36hg18NCBI36
Celera339,394,155 - 39,394,308 (+)NCBI
Cytogenetic Map3p22.1NCBI
HuRef339,495,885 - 39,496,038 (+)NCBIHuRef
CHM1_1339,403,596 - 39,403,749 (+)NCBICHM1_1


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4141833W10q13_mweight 10 weeks QTL 13 (mouse)Not determined63332429120362868Mouse
4141545Tailaq2_mtail length adjusted QTL 2 (mouse)Not determined63332429120362868Mouse
1357635Splq4_mspleen weight QTL 4 (mouse)Not determined963332429120362868Mouse
1300549Bbaa17_mB. burgdorferi-associated arthritis 17 (mouse)Not determined986230401120230530Mouse
1302103Dob2_mdietary obesity 2 (mouse)Not determined986239845120289624Mouse
11251716Siim2_mstress induced immobility 2 (mouse)986748483120748483Mouse
12880422V25Dq6_mvitamin D inactive form serum level QTL 6 (mouse)987800000121800000Mouse
10412242Alpq8_malcohol preference QTL 8 (mouse)Not determined989284925123284925Mouse
1301649Psl1_mpromotion susceptibility QTL 1 (mouse)Not determined989412277123412396Mouse
18182932Metl3_mmetabolite locus 3, N-acetylglutamate (mouse)989563342123563342Mouse
12910770Splic1_mspleen iron content 1 (mouse)991413879124595110Mouse
12910772Lvic6_mliver iron content 6 (mouse)991413879124595110Mouse
12910773Splic3_mspleen iron content 3 (mouse)991413879124595110Mouse
1558767Skmw11_mskeletal muscle weight 11 (mouse)Not determined991641084124595110Mouse
13463474Hbbcq5_mhemoglobin concentration QTL 5 (mouse)991641084124595110Mouse
13463475Hctq7_mhematocrit QTL 7 (mouse)991641084124595110Mouse
13463477Rbc9_mred blood cell count 9 (mouse)991641084124595110Mouse
13463478Mchq18_mmean corpuscular hemoglobin QTL 18 (mouse)991641084124595110Mouse
13463480Mchcq2_mmean corpuscular hemoglobin concentration QTL 2 (mouse)991641084124595110Mouse
12904937Edlmmq9_mextensor digitorum longus muscle mass QTL 9 (mouse)991683173124595110Mouse
12904947Tammq7_mtibialis anterior muscle mass QTL 7 (mouse)991683173124595110Mouse
12904961Gmmq7_mgastrocnemius muscle mass QTL 7 (mouse)991683173124595110Mouse
1302001Bdln5_mbody length 5 (mouse)Not determined993762590124595110Mouse
1301484Bwq6_mbody weight (mouse)Not determined993762590124595110Mouse
14746992Manh67_mmandible shape 67 (mouse)994036768124595110Mouse
11537364Cnes5_mC. neoformans susceptibility locus 5 (mouse)996917590124595110Mouse
1301297Lcho1_mliver cholesterol 1 (mouse)Not determined9101060861124595110Mouse
1357627Tgq2_mtriglyceride QTL 2 (mouse)Not determined9102000187124595110Mouse
1357648Obq18_mobesity QTL 18 (mouse)Not determined9102000187124595110Mouse
1301789Pbwg4_mpostnatal body weight growth 4 (mouse)Not determined9103289445124595110Mouse
10412290Pvacm1l_mplasma vascular cell adhesion molecule 1 levels (mouse)Not determined9103289445124595110Mouse
12879896Berr3_mberghei resistance locus 3 (mouse)9103289445124595110Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:140
Count of miRNA genes:134
Interacting mature miRNAs:138
Transcripts:ENSMUST00000082991
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000082991
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9120,130,415 - 120,130,563 (+)Ensembl
RefSeq Acc Id: NR_002902
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399119,959,500 - 119,959,629 (+)NCBI
GRCm389120,130,434 - 120,130,563 (+)ENTREZGENE
MGSCv379120,039,552 - 120,039,681 (+)RGD
Celera9120,599,245 - 120,599,374 (+)RGD
cM Map9 ENTREZGENE
Sequence:
Promoters
RGD ID:6845188
Promoter ID:MM_KWN:59164
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   BoneMarrow_0Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6
Transcripts:NR_002902,   UC009SCH.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv369120,038,686 - 120,040,157 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2148179 AgrOrtholog
Ensembl Genes ENSMUSG00000064925 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000082991 ENTREZGENE
MGD MGI:2148179 ENTREZGENE
NCBI Gene 104433 ENTREZGENE
PhenoGen Snora62 PhenoGen
RNAcentral URS000075EA33 RNACentral
UniGene Mm.453530 ENTREZGENE