D17H6S56E-5 (DNA segment, Chr 17, human D6S56E 5) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: D17H6S56E-5 (DNA segment, Chr 17, human D6S56E 5) Mus musculus
Analyze
Symbol: D17H6S56E-5
Name: DNA segment, Chr 17, human D6S56E 5
RGD ID: 1620666
MGI Page MGI
Description: Is expressed in central nervous system; genitourinary system; hemolymphoid system; and lung.
Type: protein-coding (Ensembl: lncRNA)
RefSeq Status: VALIDATED
Previously known as: G7e; MLV-related proviral Env polyprotein-like; uncharacterized protein LOC110956
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391735,215,654 - 35,219,722 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1735,215,654 - 35,219,393 (-)EnsemblGRCm39 Ensembl
GRCm381734,996,678 - 35,000,774 (-)NCBIGRCm38GRCm38mm10GRCm38
MGSCv361734,604,780 - 34,608,802 (-)NCBIMGSCv36mm8
Celera1738,092,904 - 38,096,967 (-)NCBICelera
Cytogenetic Map17B1NCBI
cM Map1718.54NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8026864   PMID:8954773   PMID:9271633   PMID:9551980   PMID:10199925   PMID:10349636   PMID:10871872   PMID:10922068   PMID:10940081   PMID:11042159   PMID:11076861   PMID:11217851  
PMID:11797099   PMID:12466851   PMID:12477932   PMID:12520002   PMID:12904583   PMID:14610273   PMID:15618518   PMID:16141072   PMID:16141073   PMID:17967808   PMID:18287559   PMID:18799693  
PMID:20932939   PMID:22988430   PMID:28705898   PMID:32017326   PMID:34321999  


Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:401
Count of miRNA genes:262
Interacting mature miRNAs:274
Transcripts:ENSMUST00000163360, ENSMUST00000166828
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
10412276Leci2_mleukocyte endothelial cell interactions 2 (mouse)Not determined17334817537348299Mouse
1300890Bhr3_mbronchial hyperresponsiveness 3 (mouse)Not determined17397489048866091Mouse
4141215Mnic1_mmacronutrient intake, carbohydrate 1 (mouse)Not determined485475245670266Mouse
1300706Alan1_malloantigen response 1 (mouse)Not determined17485475246469702Mouse
1357789Kdnw3_mkidney weight 3 (mouse)Not determined17485475247885665Mouse
4141272Tfv1_mtotal food volume 1 (mouse)Not determined485475265637357Mouse
10043949Pbft7_mpercent body fat 7 (mouse)Not determined17689393640893936Mouse
1301935Skull24_mskull morphology 24 (mouse)Not determined17858491442585149Mouse
1300787Cd8mts5_mCD8 memory T cell subset 5 (mouse)Not determined17858491442585149Mouse
1301338Lmr1_mleishmaniasis resistance 1 (mouse)Not determined171008134086996400Mouse
1302028Asbb3_mautoimmune susceptibility in C57BL/6J and BALB/c 3 (mouse)Not determined171087811944878219Mouse
4142342Lfnq4_mlung function QTL 4 (mouse)Not determined1120648439364059Mouse
4141067Hbnr2_mHeligmosomoides bakeri nematode resistance 2 (mouse)Not determined1188597145886119Mouse
14747010Mancz14_mmandible centroid size 14 (mouse)171199818445998184Mouse
4142150Stheal11_msoft tissue heal 11 (mouse)Not determined171228621183361768Mouse
12904946Tammq8_mtibialis anterior muscle mass QTL 8 (mouse)171245178746451787Mouse
13524847Asrq8a_macoustic startle response 8a (mouse)171264696146646961Mouse
11081168Tir7_mtrypanosome infection response 7 (mouse)171412337248123496Mouse
1300995Fembrs4_mfemur breaking strength 4 (mouse)Not determined171506165249061760Mouse
1300914Pcir4_mperiosteal circumference 4 (mouse)Not determined171506165249061760Mouse
1302070Tbbmd7_mtotal body bone mineral density 7 (mouse)Not determined171506165249061760Mouse
1558886Lgth9_mbody length 9 (mouse)Not determined171506165249061760Mouse
1302140Wta4_mweight adult 4 (mouse)Not determined171681972150819843Mouse
1302152Skull25_mskull morphology 25 (mouse)Not determined171681972150819843Mouse
10412083Sm2_msusceptibility to Schistosoma mansoni infection 2 (mouse)Not determined171702994351030078Mouse
13452396Leusq3_mleucocytosis susceptibility QTL 3 (mouse)171746220851462345Mouse
13452399Leusq6_mleucocytosis susceptibility QTL 6 (mouse)171746220851462345Mouse
10412214Sxbq3_mSGC/Knj cross B6 QTL 3 (mouse)Not determined171746220851462345Mouse
1300535Char3_mP. chabaudi malaria resistance QTL 3 (mouse)Not determined171746220851462345Mouse
1301840Ssial4_msusceptibility to sialadenitiss 4 (mouse)Not determined171817541252178214Mouse
1301331Lbw1_mlupus NZB x NZW 1 (mouse)Not determined171841835752420983Mouse
1301056Pas2_mpulmonary adenoma susceptibility 2 (mouse)Not determined171842214152424327Mouse
15039354Nmrs36_mNAFLD-associated magnetic resonance shift 36 (mouse)171914502553145025Mouse
1301454Eae5_msusceptibility to experimental allergic encephalomyelitis 5 (mouse)Not determined172461275058612864Mouse
10412198Sst5_msusceptibility to tuberculosis 5 (mouse)Not determined172507658355712970Mouse
10412196Bbaa28_mB.burgdorferi-associated arthritis 28 (mouse)Not determined172558491443976235Mouse
10412204Bbaa29_mB.burgdorferi-associated arthritis 29 (mouse)Not determined172605118560051352Mouse
1558758Kcal2_mkilocalorie 2 (mouse)Not determined172640101252911704Mouse
1300602Eye2_meye weight 2 (mouse)Not determined172650533741105037Mouse
1302005Loco2_mlocomotor activity 2 (mouse)Not determined172688497260885114Mouse
11075105Modc1_mmodifier of Odc1 (mouse)172771579245622654Mouse
15039348Nmrs37_mNAFLD-associated magnetic resonance shift 37 (mouse)172781520961815209Mouse
10045977Tir9_mtrypanosome infection response 9 (mouse)Not determined172787811943885114Mouse
1300703Uvbi2_mUVB induced immunosuppression 2 (mouse)Not determined172862240662622654Mouse
1300589Myaa2_mmodifier of Yaa 2 (mouse)Not determined173013255564132666Mouse
4141357Mrdq1_mmodifier of retinal degeneration QTL 1 (mouse)Not determined3098790348039703Mouse
4140955Plgr1_mplague resistance locus 1 (mouse)Not determined3103350065033630Mouse
1300692Blmpf1_mbleomycin-induced pulmonary fibrosis 1 (mouse)Not determined173206165237644775Mouse
25394538Skmw84_mskeletal muscle weight 84, TA (mouse)173266042635520036Mouse
26884379Skwq5_mskull length QTL 5, 5 week (mouse)173311897454107028Mouse
1302189Dps3_mdelta power in slow-wave sleep 3 (mouse)Not determined173381972136250180Mouse
1300885Mbis4_mMycobacterium bovis-induced systemic lupus erythematosus 4 (mouse)Not determined173517581770165926Mouse

Markers in Region
G67054  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381734,997,664 - 34,998,147UniSTSGRCm38
MGSCv371735,134,609 - 35,135,092UniSTSGRCm37
Celera1738,093,890 - 38,094,373UniSTS
Cytogenetic Map17B1UniSTS
cM Map1719.0UniSTS
U69488  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381734,996,876 - 34,997,008UniSTSGRCm38
MGSCv371735,133,821 - 35,133,953UniSTSGRCm37
Celera1738,093,102 - 38,093,234UniSTS
Cytogenetic Map17B1UniSTS
cM Map1719.0UniSTS
Whitehead/MRC_RH17461.73UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_033075 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017317209 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC087117 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF109906 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF397035 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF397036 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK037701 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK075966 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK088284 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK088743 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK161228 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC027314 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466666 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CU406961 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CU463845 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  L78788 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U69488 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000246793
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1735,215,701 - 35,219,330 (-)Ensembl
RefSeq Acc Id: ENSMUST00000246895
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1735,215,701 - 35,219,334 (-)Ensembl
RefSeq Acc Id: ENSMUST00000247011
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1735,215,654 - 35,219,393 (-)Ensembl
RefSeq Acc Id: ENSMUST00000247272
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1735,215,701 - 35,219,339 (-)Ensembl
RefSeq Acc Id: ENSMUST00000247403
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1735,215,701 - 35,219,393 (-)Ensembl
RefSeq Acc Id: NM_033075   ⟹   NP_149066
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391735,215,700 - 35,219,722 (-)NCBI
GRCm381734,996,724 - 35,000,746 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017317209   ⟹   XP_017172698
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391735,215,654 - 35,219,605 (-)NCBI
GRCm381734,996,678 - 35,000,774 (-)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: XP_017172698   ⟸   XM_017317209
- Peptide Label: isoform X1
- UniProtKB: P97406 (UniProtKB/TrEMBL),   Q8R067 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_149066   ⟸   NM_033075
- UniProtKB: Q91UZ6 (UniProtKB/TrEMBL),   P97406 (UniProtKB/TrEMBL),   Q8R067 (UniProtKB/TrEMBL)
- Sequence:


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000120992 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000247011 ENTREZGENE
  ENSMUST00000247403 ENTREZGENE
Gene3D-CATH 1.10.287.210 UniProtKB/TrEMBL
  3.90.310.10 UniProtKB/TrEMBL
InterPro FMuLV_rcpt-bd UniProtKB/TrEMBL
  TLV/ENV_coat_polyprotein UniProtKB/TrEMBL
KEGG Report mmu:110956 UniProtKB/TrEMBL
MGD MGI:1306799 ENTREZGENE
NCBI Gene 110956 ENTREZGENE
PANTHER BC035947 PROTEIN-RELATED UniProtKB/TrEMBL
  PTHR10424 UniProtKB/TrEMBL
Pfam TLV_coat UniProtKB/TrEMBL
PhenoGen D17H6S56E-5 PhenoGen
Superfamily-SCOP FMuLVrecept-bind UniProtKB/TrEMBL
  Virus ectodomain UniProtKB/TrEMBL
UniProt P97406 ENTREZGENE, UniProtKB/TrEMBL
  Q3TTS2_MOUSE UniProtKB/TrEMBL
  Q8BU01_MOUSE UniProtKB/TrEMBL
  Q8R067 ENTREZGENE, UniProtKB/TrEMBL
  Q91UZ6 ENTREZGENE, UniProtKB/TrEMBL