Ccdc142 (coiled-coil domain containing 142)

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Gene: Ccdc142 (coiled-coil domain containing 142) Mus musculus

Analyze

Symbol:

Ccdc142

Name:

coiled-coil domain containing 142

RGD ID:

1620559

MGI Page

MGI

Description:

Orthologous to human CCDC142 (coiled-coil domain containing 142); INTERACTS WITH 1,2-dimethylhydrazine; ethanol; (+)-catechin (ortholog).

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Also known as:

A230058J24Rik; coiled-coil domain-containing protein 142

RGD Orthologs

Human

Rat

Chinchilla

Bonobo

Dog

Squirrel

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

Latest Assembly:

GRCm38 - Mouse Genome Assembly GRCm38

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	6	83,078,497 - 83,086,102 (+)	NCBI	GRCm39		mm39
GRCm38	6	83,101,516 - 83,109,121 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	6	83,101,601 - 83,108,394 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	6	83,051,510 - 83,059,115 (+)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	6	83,067,174 - 83,074,779 (+)	NCBI			mm8
Celera	6	85,084,167 - 85,091,821 (+)	NCBI		Celera
Cytogenetic Map	6	C3	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-catechin (ISO)

1,2-dimethylhydrazine (EXP)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

aflatoxin B1 (ISO)

amphetamine (ISO)

antirheumatic drug (ISO)

benzo[a]pyrene (ISO)

bisphenol A (ISO)

copper(II) sulfate (ISO)

cyclosporin A (ISO)

diazinon (ISO)

disodium selenite (ISO)

ethanol (EXP)

leflunomide (ISO)

methyl methanesulfonate (ISO)

ozone (ISO)

urethane (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

biological_process (ND)

Cellular Component

cellular_component (ND)

Molecular Function

molecular_function (ND)

References

References - curated


1.	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2.	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:10349636	PMID:11042159	PMID:11076861	PMID:11217851	PMID:12466851	PMID:12477932	PMID:15782199	PMID:16141072	PMID:16141073

Genomics

Comparative Map Data

Ccdc142
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	6	83,078,497 - 83,086,102 (+)	NCBI	GRCm39		mm39
GRCm38	6	83,101,516 - 83,109,121 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	6	83,101,601 - 83,108,394 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	6	83,051,510 - 83,059,115 (+)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	6	83,067,174 - 83,074,779 (+)	NCBI			mm8
Celera	6	85,084,167 - 85,091,821 (+)	NCBI		Celera
Cytogenetic Map	6	C3	NCBI

CCDC142
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38.p13 Ensembl	2	74,471,986 - 74,483,408 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh38	2	74,472,832 - 74,482,998 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh37	2	74,699,959 - 74,710,357 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
GRCh37	2	74,699,959 - 74,710,125 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	2	74,554,737 - 74,563,631 (-)	NCBI	NCBI36		hg18	NCBI36
Celera	2	74,531,147 - 74,541,522 (-)	NCBI
Cytogenetic Map	2	p13.1	NCBI
HuRef	2	74,436,231 - 74,446,618 (-)	NCBI		HuRef
CHM1_1	2	74,629,375 - 74,639,766 (-)	NCBI		CHM1_1

Ccdc142
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	4	115,606,151 - 115,616,223 (+)	NCBI
Rnor_6.0 Ensembl	4	113,935,492 - 113,941,478 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0 Ensembl	4	114,800,900 - 114,807,204 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0	4	113,933,466 - 113,941,297 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	4	178,618,437 - 178,627,007 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	4	117,314,474 - 117,320,561 (+)	NCBI	RGSC3.4		rn4	RGSC3.4
Celera	4	104,601,277 - 104,609,108 (+)	NCBI		Celera
Cytogenetic Map	4	q34	NCBI

Ccdc142
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955424	11,304,988 - 11,317,294 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955424	11,304,968 - 11,312,679 (+)	NCBI	ChiLan1.0	ChiLan1.0

LOC100988969
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	2A	76,046,330 - 76,056,588 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	2A	76,046,330 - 76,056,586 (-)	Ensembl	panpan1.1		panPan2
PanPan1.1 Ensembl	2A	76,045,478 - 76,046,308 (-)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	2A	74,538,684 - 74,549,677 (-)	NCBI	Mhudiblu_PPA_v0		panPan3

CCDC142
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1 Ensembl	17	48,655,383 - 48,662,583 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
CanFam3.1	17	48,655,347 - 48,662,609 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1

Ccdc142
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
SpeTri2.0	NW_004936556	693,383 - 700,899 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CCDC142
(Chlorocebus sabaeus - African green monkey)

Vervet Assembly	Chr	Position (strand)	Source	Genome Browsers
Vervet Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	14	32,795,237 - 32,806,395 (+)	NCBI
ChlSab1.1 Ensembl	14	32,795,365 - 32,803,797 (+)	Ensembl

Ccdc142
(Heterocephalus glaber - naked mole-rat)

Molerat Assembly	Chr	Position (strand)	Source	Genome Browsers
Molerat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624749	29,026,728 - 29,034,394 (+)	NCBI

QTLs in Region (GRCm38)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
25440480	Moaq2_m	modifier of alien QTL 2 (mouse)					6	1	117500000	Mouse
26884414	Bzwq12_m	bi-zygomatic width QTL 12, 16 week (mouse)					6	3400000	139100000	Mouse
1300556	Cia6_m	collagen induced arthritis QTL 6 (mouse)			Not determined		6	4464884	87426034	Mouse
4142126	W3q3_m	weight 3 weeks QTL 3 (mouse)			Not determined			4503823	96656149	Mouse
4142361	W10q11_m	weight 10 weeks QTL 11 (mouse)			Not determined			4503823	96656149	Mouse
4142271	Egq8_m	early growth QTL 8 (mouse)			Not determined			4503823	96656149	Mouse
4142232	W6q4_m	weight 6 weeks QTL 4 (mouse)			Not determined			4503823	96656149	Mouse
1558984	Cplaq9_m	circadian period of locomotor activity 9 (mouse)			Not determined		6	38669625	92607450	Mouse
1300618	Pgia19_m	proteoglycan induced arthritis 19 (mouse)			Not determined		6	45314059	87426034	Mouse
10412157	Fl1n_m	fatty liver 1 in NSY (mouse)			Not determined		6	45314059	128835032	Mouse
4142259	Tabw2_m	tally ho associated body weight 2 (mouse)			Not determined			46935985	136423692	Mouse
25314319	Histh6_m	histamine hypersensitivity 6 (mouse)					6	48720000	125360000	Mouse
25314320	Histh5_m	histamine hypersensitivity 5 (mouse)					6	48720000	148450000	Mouse
1301962	Eila2_m	ethanol induced locomotor activity 2 (mouse)			Not determined		6	48726556	125356785	Mouse
1301254	Skts11_m	skin tumor susceptibility 11 (mouse)			Not determined		6	51179150	85179300	Mouse
1357683	Igf1sl1_m	IGF-1 serum levels 1 (mouse)			Not determined		6	52161713	116155267	Mouse
4141028	Mclr_m	methylcholanthrene lymphoma resistance (mouse)			Not determined			54373427	88379171	Mouse
15039373	Adip28_m	adiposity 28 (mouse)					6	56308211	90308211	Mouse
15039375	Bw41_m	body weight QTL 41 (mouse)					6	56308211	90308211	Mouse
1558977	Skmw10_m	skeletal muscle weight 10 (mouse)			Not determined		6	58447583	92447710	Mouse
10043972	Obq28_m	obesity QTL 28 (mouse)			Not determined		6	58540433	92540433	Mouse
1301740	Bwq2_m	body weight QTL 2 (mouse)			Not determined		6	60057680	94057799	Mouse
1301369	Im4_m	immunoregulatory 4 (mouse)			Not determined		6	63484738	97484905	Mouse
1300650	Bw18_m	body weight QTL 18 (mouse)			Not determined		6	66713869	100714031	Mouse
1301876	Bits2_m	bitterness sensitivity 2 (mouse)			Not determined		6	70425898	104426034	Mouse
1301813	Skl3_m	skeletal size (tail length) 3 (mouse)			Not determined		6	70425898	104426034	Mouse
1301034	Egrm2_m	early growth rate (mouse)			Not determined		6	70425898	104426034	Mouse
4141990	Etax6_m	ethanol induced ataxia 6 (mouse)			Not determined			71322621	86275719	Mouse
1302020	Bbaa20_m	B.burgdorferi-associated arthritis 20 (mouse)			Not determined		6	71322621	93464093	Mouse
1300869	Stheal5_m	soft tissue heal 5 (mouse)			Not determined		6	71575060	105575178	Mouse
1300954	Fcsa1_m	femoral cross-sectional area 1 (mouse)			Not determined		6	71981024	105981170	Mouse
1301521	Pas1c_m	pulmonary adenoma susceptibility 1c (mouse)			Not determined		6	71981024	105981170	Mouse
13506930	Recrq9_m	recombination rate in male meiosis QTL 9 (mouse)					6	73500000	134700000	Mouse
1301320	Ots1_m	ovarian teratoma susceptibility 1 (mouse)			Not determined		6	75447583	104503555	Mouse
1301571	Arrd1_m	age-related retinal degeneration 1 (mouse)			Not determined		6	75544356	92607450	Mouse
1300674	Nidd3n_m	non-insulin-dependent diabetes mellitus 3 in NSY (mouse)			Not determined		6	75544356	94225955	Mouse
10412195	Efw_m	epididymal fat weight (mouse)			Not determined		6	75544356	94225955	Mouse
10043901	Pfat5_m	predicted fat percentage 5 (mouse)			Not determined		6	75607306	109607450	Mouse
10412208	Cypr4_m	cytokine production 4 (mouse)			Not determined		6	75716503	109716697	Mouse
1357875	Pfat2_m	predicted fat percentage 2 (mouse)			Not determined		6	76463949	110464093	Mouse
14697704	Stsl4_m	Salmonella typhimurium susceptibility locus 4 (mouse)					6	77100000	90000000	Mouse
13824985	Alh1_m	amplitude of lateral head displacement 1 (mouse)					6	78000000	97000000	Mouse
4141376	Dbm1_m	diabetes modifier 1 (mouse)			Not determined		6	78629504	121115387	Mouse
14696731	Pairq1_m	P. aeruginosa infection resistance QTL 1 (mouse)					6	81500000	102200000	Mouse

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	913
Count of miRNA genes:	532
Interacting mature miRNAs:	627
Transcripts:	ENSMUST00000101253, ENSMUST00000101254, ENSMUST00000134891
Prediction methods:	Microtar, Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001081266	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC104324	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK038734	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK217537	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSMUST00000101254 ⟹ ENSMUSP00000098812

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38.p6 Ensembl	6	83,101,601 - 83,108,394 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000134891

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38.p6 Ensembl	6	83,107,101 - 83,107,834 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000203533

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38.p6 Ensembl	6	83,101,658 - 83,103,854 (+)	Ensembl

RefSeq Acc Id:

NM_001081266 ⟹ NP_001074735

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	6	83,078,497 - 83,086,102 (+)	NCBI
GRCm38	6	83,101,516 - 83,109,121 (+)	ENTREZGENE
MGSCv37	6	83,051,510 - 83,059,115 (+)	RGD
Celera	6	85,084,167 - 85,091,821 (+)	RGD
cM Map	6		ENTREZGENE

Sequence:

show sequence

GAGTAAGTGGGTGGCCATCTTTGTTAGGGGCAGAGGTCGTGGCTACGGAGCCCCAGTAAGACCA
CGAGACTTCCGGCTAGCTGGTGAGTCCTGGCGCCCACGGGCGTGGAGTGCGACGGGAAGCGGGG
AGGCGGCGAGCGTTAGGTTCGTTTGGGACTCGCCGTGCAAATGGCACGGGCGTCCAGCTCTAGT
GGCCCTTTGCCTCCACTCGCTAACGTACCCTCGTCGTGGGCGCAGCCCGTGGGCGCTGGGGAGG
AGCGGGACGAGGGGAGGCGTGGAGGGCTAGGGCTACTGGCTGCGGTGAGCGTCCCGTGCCCGGA
CTTCAGCAGACAGCCGTGGGCTCCCGCGTCTGCAAGCGGCCCGATGCCCTTCGCTCTTCAGCGG
CTCCGGGCCACATTGCTTCGTCTGCACCGCGAGCGAGAGCAGCTCCTGCGGGCCCGGGACTGCG
CCCGCCACCTGCAGGCGGTCGTGCGGCTGCTCCGCTCCGGCTCCTCGGCCGGTTCCCTCTCCCT
GCAGCAGTTGCACGGCGATTTACAGCTGTGCCCATCTCGTGGGGCGGCTCTGCGCCTCGGCTTC
CCGGGCTCCAGGGAGACGCTTCTCCTGACTCGCCCTGTCGGGCTAGCTGCCCAGCACTTGGAGG
CTGCCATCGAGATGCAGCTTCGTTCACTGGGCCGGACACCCGCTAGCCTGGGCCTGACATCCCA
GCTAGCCGAACTGTTGCTGGCCCTTCCCTTCTACCACACTCTGCAGGGACATTCCCTGAACTTC
GTCCCCGGGGCCGCGCGCCCATTCCCCGCGGCCCGTGTGCTCCAGCTCCTGGCTGCAGAGCGGG
GTTGTCAGGTGGCAGATAAGCTGGCTGAAGCCCGTGGCGGATCGGGCTTGCAGGAGCAGCTCCG
TCGGCAGTGCGAGCAAGAGCGAGAGCTGCTGCCCGGGCTGCTGGGCCTGGTAGGGGGCGTGGCT
AGCACCGACAGCAGCGGACTGAGGCTTGGGGGACCTGGAGCCCTGTGGAGCCAGTATTGGACCT
TGCTGTGGGCAGCCTGTGCTAAGTGTTTGGACCTACGCGTGGGACCCTGGGAGGACCCTAGAGC
AATGGCACAAGAGCTGAGTCAGGCACTGTGTCAAGCACCCCTGCCTCAGGAGTGTGAGAAGGAG
CTGTTGTCTCTGTGTCACAGCCTGTTTCACCAGTCTGTCATCTGCAGCTGGGACCAAGGGTTCT
GCCAGGCCTTAGGATCAGCCCTGGGTGGTCAGAGCAGCCCTGCGTCACTGTCTCCTACCTCTGA
GCTGCTGCAGCGGCTTTTTCCTCCCCTCTTGGATAGCCTTCGACAGCCCAGGCCAGAACTTAGG
CTGTGTCCGCCTGCAGGTCCTACGCCTGTCGCTCTGGGGCTCTGTACCCTGCAGACCACCTTGC
TCTGGTTTGTGGGCAGAGCTCAGCAGCACCTGGCAGCGTGGGACCCCGGTTCCTTCTTGCTCCT
GCTCCAGAAGGATCTGCCTCCTCTTCTGTCTGCGGTGGAGGCGCTGTCCAGCCTGGCCTCCGAA
GCAGCGCTCACTCTGGAGGTGGAGCAGCAGCTGGGCCTAGAGATCCACAATTTGACTGAAAAGA
TGCAGCTCCTGCCCAAAGAATCACTGGGTCTGTTTGTCCAAGAATGCCATAAACAAGCCACACA
AGGCTTCAAGCTCCACATGCCGAGGGGTCGATACTGGAGACTTCGATTGTGTCCTGAACCTCCC
AGTGACCCTAGTGAGTACGCTCGGATAGTGGTCTACTCTGTGTTGGAGCCTGTGTTGCAAGGAC
TTCAGGGATTGCCACCTGAAGCCCAAGCCCCTGCCCTCGGCCAGGCACTGACAGCCACACTGGG
CGCCTGGCTTGACCACATCCTCACCCATGGGATCCGGTTCAGCCTGCAGGGGGCGCTGCAGCTC
AAGCAAGACTTCGGAGTGGTCAGGGAGGTTCTGGAACAAGAGCAGTGGGGCCTGTCGCAGGAGC
TTCGCCAGACTCTGCTCTCACTCAGCATCTTCCAGCAGCTAGATGGGGCCCTGCTGTGTCTCCT
GCAGCAACCCCTGCCCAAGAATCCAGTCCACAGAAGACCTCCCCGTTGCTGTCTCTGTTATGAG
GTCCAGACCACTGAACTGCCCACCAGCAGCCTCAACAGCCTGGAAAACTTGGCACCCCCTCTTC
GTCTTGGAGTCTCCCCTGCCCAGAACACTCACCTGCTAAGCACCCTGGGGGGAGGAGGACGAGG
AGGAGGGGGAGGGGGAGGACCAGGACCTAGTCCTGAGGCTTACCTGGTGGGAAACCAGCAAGCC
TGGCTTGCCCTGAGGCTGCACCAACACCCACGTTGGCACCTGCCTTTTTTTTCTTGCCTGAGGA
CAAGTCCTGAACCCTAAGTTGACTAGGACCAGGGGTTGCAGATCATGCCCCAGACAAGGAACTG
TATGCTAGAGAAGCTTAAACCTGGGTGCTTGATAAAACATGTTCATAAACTAGAGTCCAGAATT
GAACCCCCAGATCATCCTAGGATCTGCAATCCAGAGTAATAGGCAAACTACAGCCTGAAATCTG
GATGTCGGAAACAATGAAGACATCTTGGAGCTAAAACTAGAAGGGGTCTACAGGGCTAGCGCTC
AGGAGACAGGCAAACCTTGCTTTCTCTCGAATCCCAGGAGCAAAGCGAAAACTGATTCATGAGG
AAACACAGACAAAGCAGACATTTCTACACGTGGAGGGCAGTCTTACCCCTTCCCCGTCTCTGTT
TCTAGTCATTAGGCTGTAGGGCCTGGACATTTAAGCCTTGGCTGTTGCTACAGGGGCAGGGCTT
GCCTTCTGCTGGGTGGACAGTCCCCGCAGTGACATCCTTTCCAAGGAAGGAGCCAGGATGTGGG
GTGGTGCTGACCTAGATCTCGCAGGCAGGACCCCGAGGGAGAGGGCTGAAGGACGTTTTCCTGC
GAAGGGGATTTTGCACATTCACTGCTTATGCTGTGTGGCACAGAACACTGCTAATGGCTGAAGT
ATTCGCGGGTGGCCCCGGAGGTCAGCCGCGCGAAGTACCGCGGAGCCGCCGGAAGCGGTCCGTT
CCAATAAACCGATCCCCAGTGCTACTCCTTCCGGGGTGGAGGTAACCATGGCGGCGG

hide sequence

Protein Sequences


Protein RefSeqs	NP_001074735	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	BAC30114	(Get FASTA)	NCBI Sequence Viewer
	Q8CAI1	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:

NP_001074735 ⟸ NM_001081266

- UniProtKB:

Q8CAI1 (UniProtKB/Swiss-Prot)

- Sequence:

show sequence

MARASSSSGPLPPLANVPSSWAQPVGAGEERDEGRRGGLGLLAAVSVPCPDFSRQPWAPASASG
PMPFALQRLRATLLRLHREREQLLRARDCARHLQAVVRLLRSGSSAGSLSLQQLHGDLQLCPSR
GAALRLGFPGSRETLLLTRPVGLAAQHLEAAIEMQLRSLGRTPASLGLTSQLAELLLALPFYHT
LQGHSLNFVPGAARPFPAARVLQLLAAERGCQVADKLAEARGGSGLQEQLRRQCEQERELLPGL
LGLVGGVASTDSSGLRLGGPGALWSQYWTLLWAACAKCLDLRVGPWEDPRAMAQELSQALCQAP
LPQECEKELLSLCHSLFHQSVICSWDQGFCQALGSALGGQSSPASLSPTSELLQRLFPPLLDSL
RQPRPELRLCPPAGPTPVALGLCTLQTTLLWFVGRAQQHLAAWDPGSFLLLLQKDLPPLLSAVE
ALSSLASEAALTLEVEQQLGLEIHNLTEKMQLLPKESLGLFVQECHKQATQGFKLHMPRGRYWR
LRLCPEPPSDPSEYARIVVYSVLEPVLQGLQGLPPEAQAPALGQALTATLGAWLDHILTHGIRF
SLQGALQLKQDFGVVREVLEQEQWGLSQELRQTLLSLSIFQQLDGALLCLLQQPLPKNPVHRRP
PRCCLCYEVQTTELPTSSLNSLENLAPPLRLGVSPAQNTHLLSTLGGGGRGGGGGGGPGPSPEA
YLVGNQQAWLALRLHQHPRWHLPFFSCLRTSPEP

hide sequence

RefSeq Acc Id:

ENSMUSP00000098812 ⟸ ENSMUST00000101254

Promoters

RGD ID:

6839055

Promoter ID:

MM_KWN:46571

Type:

CpG-Island

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

3T3L1_Day0, 3T3L1_Day2, 3T3L1_Day4, 3T3L1_Day6, BoneMarrow_0Hour, BoneMarrow_2Hour, BoneMarrow_4Hour, Brain, ES_Cell, Kidney, Liver, Lung, MEF_B4, MEF_B6, Spleen

Transcripts:

UC009CMJ.1, UC009CMK.1

Position:

Mouse Assembly	Chr	Position (strand)	Source
MGSCv36	6	83,051,531 - 83,052,267 (+)	MPROMDB

RGD ID:

6890128

Promoter ID:

EPDNEW_M8514

Type:

multiple initiation site

Name:

Ccdc142_1

Description:

Mus musculus coiled-coil domain containing 142 , mRNA.

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	6	83,101,601 - 83,101,661	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	MGI:3045292	AgrOrtholog
Ensembl Genes	ENSMUSG00000107499	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Protein	ENSMUSP00000098812	ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSMUST00000101254	ENTREZGENE, UniProtKB/Swiss-Prot
InterPro	CCDC142	UniProtKB/Swiss-Prot
KEGG Report	mmu:243510	UniProtKB/Swiss-Prot
MGD	MGI:3045292	ENTREZGENE
NCBI Gene	243510	ENTREZGENE
PANTHER	PTHR21436	UniProtKB/Swiss-Prot
Pfam	CCDC142	UniProtKB/Swiss-Prot
PhenoGen	Ccdc142	PhenoGen
UniProt	CC142_MOUSE	UniProtKB/Swiss-Prot, ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)