Ccdc142 (coiled-coil domain containing 142) - Rat Genome Database

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Gene: Ccdc142 (coiled-coil domain containing 142) Mus musculus
Analyze
Symbol: Ccdc142
Name: coiled-coil domain containing 142
RGD ID: 1620559
MGI Page MGI
Description: Orthologous to human CCDC142 (coiled-coil domain containing 142).
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: A230058J24Rik; coiled-coil domain-containing protein 142
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39683,078,497 - 83,086,102 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl683,078,582 - 83,085,375 (+)EnsemblGRCm39 Ensembl
GRCm38683,101,516 - 83,109,121 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl683,101,601 - 83,108,394 (+)EnsemblGRCm38mm10GRCm38
MGSCv37683,051,510 - 83,059,115 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36683,067,174 - 83,074,779 (+)NCBIMGSCv36mm8
Celera685,084,167 - 85,091,821 (+)NCBICelera
Cytogenetic Map6C3NCBI
cM Map635.94NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:15782199   PMID:16141072   PMID:16141073  


Genomics

Comparative Map Data
Ccdc142
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39683,078,497 - 83,086,102 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl683,078,582 - 83,085,375 (+)EnsemblGRCm39 Ensembl
GRCm38683,101,516 - 83,109,121 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl683,101,601 - 83,108,394 (+)EnsemblGRCm38mm10GRCm38
MGSCv37683,051,510 - 83,059,115 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36683,067,174 - 83,074,779 (+)NCBIMGSCv36mm8
Celera685,084,167 - 85,091,821 (+)NCBICelera
Cytogenetic Map6C3NCBI
cM Map635.94NCBI
CCDC142
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38274,472,832 - 74,482,998 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl274,471,986 - 74,483,408 (-)EnsemblGRCh38hg38GRCh38
GRCh37274,699,959 - 74,710,125 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36274,554,737 - 74,563,631 (-)NCBINCBI36Build 36hg18NCBI36
Celera274,531,147 - 74,541,522 (-)NCBICelera
Cytogenetic Map2p13.1NCBI
HuRef274,436,231 - 74,446,618 (-)NCBIHuRef
CHM1_1274,629,375 - 74,639,766 (-)NCBICHM1_1
T2T-CHM13v2.0274,481,399 - 74,491,562 (-)NCBIT2T-CHM13v2.0
Ccdc142
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84117,164,055 - 117,172,286 (+)NCBIGRCr8
mRatBN7.24115,606,151 - 115,616,223 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4115,608,485 - 115,616,216 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.04113,933,466 - 113,941,297 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4113,935,492 - 113,941,478 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0 Ensembl4114,800,900 - 114,807,204 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04178,618,437 - 178,627,007 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44117,314,474 - 117,320,561 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera4104,601,277 - 104,609,108 (+)NCBICelera
Cytogenetic Map4q34NCBI
Ccdc142
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542411,304,988 - 11,317,294 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542411,304,968 - 11,312,679 (+)NCBIChiLan1.0ChiLan1.0
LOC100988969
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21251,906,253 - 51,917,203 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A51,909,090 - 51,919,957 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A74,538,684 - 74,549,677 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A76,046,330 - 76,056,588 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A76,046,330 - 76,056,586 (-)Ensemblpanpan1.1panPan2
PanPan1.1 Ensembl2A76,045,478 - 76,046,308 (-)Ensemblpanpan1.1panPan2
CCDC142
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11748,655,347 - 48,662,609 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1748,655,383 - 48,662,583 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1748,296,760 - 48,304,489 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01749,514,115 - 49,521,844 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1749,514,621 - 49,524,007 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11748,531,244 - 48,538,967 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01748,598,002 - 48,605,731 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01749,155,706 - 49,163,434 (+)NCBIUU_Cfam_GSD_1.0
Ccdc142
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629210,037,012 - 10,044,534 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936556693,198 - 700,888 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936556693,383 - 700,899 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CCDC142
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11432,795,237 - 32,806,395 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1432,795,365 - 32,803,797 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604579,364,857 - 79,376,081 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ccdc142
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474929,026,823 - 29,034,632 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474929,026,728 - 29,034,394 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Ccdc142
356 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:913
Count of miRNA genes:532
Interacting mature miRNAs:627
Transcripts:ENSMUST00000101253, ENSMUST00000101254, ENSMUST00000134891
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4142271Egq8_mearly growth QTL 8 (mouse)Not determined450382396633110Mouse
1301521Pas1c_mpulmonary adenoma susceptibility 1c (mouse)Not determined671958006105958152Mouse
14697704Stsl4_mSalmonella typhimurium susceptibility locus 4 (mouse)67707698389976982Mouse
10412119Stv_mstriatal volumne (mouse)Not determined660026991100026967Mouse
1300954Fcsa1_mfemoral cross-sectional area 1 (mouse)Not determined671958006105958152Mouse
13824985Alh1_mamplitude of lateral head displacement 1 (mouse)67797698396976961Mouse
4142259Tabw2_mtally ho associated body weight 2 (mouse)Not determined46912919136400690Mouse
25314319Histh6_mhistamine hypersensitivity 6 (mouse)648696934125336963Mouse
12792979Fbmd2_mfemoral bone mineral density 2, females only (mouse)675026989115026943Mouse
1301571Arrd1_mage-related retinal degeneration 1 (mouse)Not determined67552133992584431Mouse
4142126W3q3_mweight 3 weeks QTL 3 (mouse)Not determined450382396633110Mouse
1300674Nidd3n_mnon-insulin-dependent diabetes mellitus 3 in NSY (mouse)Not determined67552133994202936Mouse
25314320Histh5_mhistamine hypersensitivity 5 (mouse)648696934148351498Mouse
1301254Skts11_mskin tumor susceptibility 11 (mouse)Not determined65115613485156284Mouse
1558977Skmw10_mskeletal muscle weight 10 (mouse)Not determined65842456692424693Mouse
1300869Stheal5_msoft tissue heal 5 (mouse)Not determined671552042105552160Mouse
1302020Bbaa20_mB.burgdorferi-associated arthritis 20 (mouse)Not determined67129960593441074Mouse
1300618Pgia19_mproteoglycan induced arthritis 19 (mouse)Not determined64529099387403016Mouse
1301962Eila2_methanol induced locomotor activity 2 (mouse)Not determined648703490125333748Mouse
4141990Etax6_methanol induced ataxia 6 (mouse)Not determined7129960586252701Mouse
4141028Mclr_mmethylcholanthrene lymphoma resistance (mouse)Not determined5435041188356155Mouse
1301320Ots1_movarian teratoma susceptibility 1 (mouse)Not determined675424566104480516Mouse
10043972Obq28_mobesity QTL 28 (mouse)Not determined65851741692517416Mouse
1300556Cia6_mcollagen induced arthritis QTL 6 (mouse)Not determined6446488487403016Mouse
1558984Cplaq9_mcircadian period of locomotor activity 9 (mouse)Not determined63864656092584431Mouse
10412157Fl1n_mfatty liver 1 in NSY (mouse)Not determined645290993128811995Mouse
25440480Moaq2_mmodifier of alien QTL 2 (mouse)63050001117476961Mouse
26884414Bzwq12_mbi-zygomatic width QTL 12, 16 week (mouse)63400000139076998Mouse
10043901Pfat5_mpredicted fat percentage 5 (mouse)Not determined675584287109584431Mouse
4142361W10q11_mweight 10 weeks QTL 11 (mouse)Not determined450382396633110Mouse
1301813Skl3_mskeletal size (tail length) 3 (mouse)Not determined670402880104403016Mouse
4142232W6q4_mweight 6 weeks QTL 4 (mouse)Not determined450382396633110Mouse
1357683Igf1sl1_mIGF-1 serum levels 1 (mouse)Not determined652138693116132228Mouse
1301876Bits2_mbitterness sensitivity 2 (mouse)Not determined670402880104403016Mouse
1357875Pfat2_mpredicted fat percentage 2 (mouse)Not determined676440930110441074Mouse
15039373Adip28_madiposity 28 (mouse)65628519490285194Mouse
15039375Bw41_mbody weight QTL 41 (mouse)65628519490285194Mouse
1301369Im4_mimmunoregulatory 4 (mouse)Not determined66346172197461888Mouse
10412208Cypr4_mcytokine production 4 (mouse)Not determined675693484109693678Mouse
1300650Bw18_mbody weight QTL 18 (mouse)Not determined666690851100691013Mouse
1301034Egrm2_mearly growth rate (mouse)Not determined670402880104403016Mouse
14696731Pairq1_mP. aeruginosa infection resistance QTL 1 (mouse)681476981102176961Mouse
13506930Recrq9_mrecombination rate in male meiosis QTL 9 (mouse)673476983134676963Mouse
10412195Efw_mepididymal fat weight (mouse)Not determined67552133994202936Mouse
1301740Bwq2_mbody weight QTL 2 (mouse)Not determined66003466394034782Mouse
4141376Dbm1_mdiabetes modifier 1 (mouse)Not determined678606487121092347Mouse


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSMUST00000101254   ⟹   ENSMUSP00000098812
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl683,078,582 - 83,085,375 (+)Ensembl
GRCm38.p6 Ensembl683,101,601 - 83,108,394 (+)Ensembl
Ensembl Acc Id: ENSMUST00000134891
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl683,084,082 - 83,084,815 (+)Ensembl
GRCm38.p6 Ensembl683,107,101 - 83,107,834 (+)Ensembl
Ensembl Acc Id: ENSMUST00000203533
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl683,078,639 - 83,080,835 (+)Ensembl
GRCm38.p6 Ensembl683,101,658 - 83,103,854 (+)Ensembl
RefSeq Acc Id: NM_001081266   ⟹   NP_001074735
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39683,078,497 - 83,086,102 (+)NCBI
GRCm38683,101,516 - 83,109,121 (+)ENTREZGENE
MGSCv37683,051,510 - 83,059,115 (+)RGD
Celera685,084,167 - 85,091,821 (+)RGD
cM Map6 ENTREZGENE
Sequence:
Protein Sequences
Protein RefSeqs NP_001074735 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein BAC30114 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000098812
  ENSMUSP00000098812.4
GenBank Protein Q8CAI1 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_001074735   ⟸   NM_001081266
- UniProtKB: Q8CAI1 (UniProtKB/Swiss-Prot)
- Sequence:
Ensembl Acc Id: ENSMUSP00000098812   ⟸   ENSMUST00000101254

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8CAI1-F1-model_v2 AlphaFold Q8CAI1 1-738 view protein structure

Promoters
RGD ID:6839055
Promoter ID:MM_KWN:46571
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day2,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:UC009CMJ.1,   UC009CMK.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36683,051,531 - 83,052,267 (+)MPROMDB
RGD ID:6890128
Promoter ID:EPDNEW_M8514
Type:multiple initiation site
Name:Ccdc142_1
Description:Mus musculus coiled-coil domain containing 142 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38683,101,601 - 83,101,661EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:3045292 AgrOrtholog
Ensembl Genes ENSMUSG00000107499 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000101254 ENTREZGENE
  ENSMUST00000101254.9 UniProtKB/Swiss-Prot
InterPro CCDC142 UniProtKB/Swiss-Prot
KEGG Report mmu:243510 UniProtKB/Swiss-Prot
MGD MGI:3045292 ENTREZGENE
NCBI Gene 243510 ENTREZGENE
PANTHER COILED-COIL DOMAIN-CONTAINING PROTEIN 142 UniProtKB/Swiss-Prot
  PTHR21436 UniProtKB/Swiss-Prot
Pfam CCDC142 UniProtKB/Swiss-Prot
PhenoGen Ccdc142 PhenoGen
UniProt CC142_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE