BC048671 (cDNA sequence BC048671) - Rat Genome Database
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Gene: BC048671 (cDNA sequence BC048671) Mus musculus
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Symbol: BC048671
Name: cDNA sequence BC048671
RGD ID: 1620557
MGI Page MGI
Description: Orthologous to human C3orf22 (chromosome 3 open reading frame 22); INTERACTS WITH (+)-catechin (ortholog); aflatoxin B1 (ortholog); arsane (ortholog).
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: hypothetical protein LOC243535; MGC58841; uncharacterized protein C3orf22 homolog
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39690,278,201 - 90,282,430 (+)NCBIGRCm39mm39
GRCm39 Ensembl690,278,201 - 90,282,431 (+)Ensembl
GRCm38690,301,219 - 90,305,448 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl690,301,219 - 90,305,449 (+)EnsemblGRCm38mm10GRCm38
MGSCv37690,251,264 - 90,255,442 (+)NCBIGRCm37mm9NCBIm37
MGSCv36690,266,774 - 90,270,952 (+)NCBImm8
Celera692,195,104 - 92,199,276 (+)NCBICelera
Cytogenetic Map6D1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:15489334   PMID:16141072   PMID:16141073   PMID:21267068   PMID:21677750  


Genomics

Comparative Map Data
BC048671
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39690,278,201 - 90,282,430 (+)NCBIGRCm39mm39
GRCm39 Ensembl690,278,201 - 90,282,431 (+)Ensembl
GRCm38690,301,219 - 90,305,448 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl690,301,219 - 90,305,449 (+)EnsemblGRCm38mm10GRCm38
MGSCv37690,251,264 - 90,255,442 (+)NCBIGRCm37mm9NCBIm37
MGSCv36690,266,774 - 90,270,952 (+)NCBImm8
Celera692,195,104 - 92,199,276 (+)NCBICelera
Cytogenetic Map6D1NCBI
C3orf22
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl3126,526,999 - 126,558,965 (-)EnsemblGRCh38hg38GRCh38
GRCh383126,524,439 - 126,558,965 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh373126,245,842 - 126,277,775 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 363127,751,209 - 127,760,448 (-)NCBINCBI36hg18NCBI36
Celera3124,693,189 - 124,702,399 (-)NCBI
Cytogenetic Map3q21.3NCBI
HuRef3123,648,905 - 123,658,113 (-)NCBIHuRef
CHM1_13126,208,862 - 126,240,787 (-)NCBICHM1_1
LOC685964
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.24122,817,681 - 122,822,175 (+)NCBI
Rnor_6.0 Ensembl4122,217,505 - 122,221,999 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.04122,217,505 - 122,221,999 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.04186,758,874 - 186,763,369 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44124,564,593 - 124,569,087 (+)NCBIRGSC3.4rn4RGSC3.4
Celera4111,742,535 - 111,746,963 (+)NCBICelera
Cytogenetic Map4q34NCBI
LOC102020573
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495542121,945,527 - 21,949,229 (+)NCBIChiLan1.0ChiLan1.0
C3H3orf22
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.13130,914,841 - 130,924,133 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3130,914,841 - 130,924,133 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v03123,599,191 - 123,609,230 (-)NCBIMhudiblu_PPA_v0panPan3
C20H3orf22
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl20753,461 - 757,115 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.120752,614 - 758,180 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CUNH3orf22
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_004936898608,726 - 610,110 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CUNH3orf22
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12254,455,637 - 54,465,446 (+)NCBI
ChlSab1.1 Ensembl2254,461,735 - 54,465,250 (+)Ensembl


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
25440480Moaq2_mmodifier of alien QTL 2 (mouse)61117500000Mouse
26884414Bzwq12_mbi-zygomatic width QTL 12, 16 week (mouse)63400000139100000Mouse
4142126W3q3_mweight 3 weeks QTL 3 (mouse)Not determined450382396656149Mouse
4142361W10q11_mweight 10 weeks QTL 11 (mouse)Not determined450382396656149Mouse
4142271Egq8_mearly growth QTL 8 (mouse)Not determined450382396656149Mouse
4142232W6q4_mweight 6 weeks QTL 4 (mouse)Not determined450382396656149Mouse
1558984Cplaq9_mcircadian period of locomotor activity 9 (mouse)Not determined63866962592607450Mouse
10412157Fl1n_mfatty liver 1 in NSY (mouse)Not determined645314059128835032Mouse
4142259Tabw2_mtally ho associated body weight 2 (mouse)Not determined46935985136423692Mouse
25314319Histh6_mhistamine hypersensitivity 6 (mouse)648720000125360000Mouse
25314320Histh5_mhistamine hypersensitivity 5 (mouse)648720000148450000Mouse
1301962Eila2_methanol induced locomotor activity 2 (mouse)Not determined648726556125356785Mouse
1357683Igf1sl1_mIGF-1 serum levels 1 (mouse)Not determined652161713116155267Mouse
15039373Adip28_madiposity 28 (mouse)65630821190308211Mouse
15039375Bw41_mbody weight QTL 41 (mouse)65630821190308211Mouse
1558977Skmw10_mskeletal muscle weight 10 (mouse)Not determined65844758392447710Mouse
10043972Obq28_mobesity QTL 28 (mouse)Not determined65854043392540433Mouse
1301740Bwq2_mbody weight QTL 2 (mouse)Not determined66005768094057799Mouse
1301369Im4_mimmunoregulatory 4 (mouse)Not determined66348473897484905Mouse
1300650Bw18_mbody weight QTL 18 (mouse)Not determined666713869100714031Mouse
1301876Bits2_mbitterness sensitivity 2 (mouse)Not determined670425898104426034Mouse
1301813Skl3_mskeletal size (tail length) 3 (mouse)Not determined670425898104426034Mouse
1301034Egrm2_mearly growth rate (mouse)Not determined670425898104426034Mouse
1302020Bbaa20_mB.burgdorferi-associated arthritis 20 (mouse)Not determined67132262193464093Mouse
1300869Stheal5_msoft tissue heal 5 (mouse)Not determined671575060105575178Mouse
1300954Fcsa1_mfemoral cross-sectional area 1 (mouse)Not determined671981024105981170Mouse
1301521Pas1c_mpulmonary adenoma susceptibility 1c (mouse)Not determined671981024105981170Mouse
13506930Recrq9_mrecombination rate in male meiosis QTL 9 (mouse)673500000134700000Mouse
1301320Ots1_movarian teratoma susceptibility 1 (mouse)Not determined675447583104503555Mouse
1301571Arrd1_mage-related retinal degeneration 1 (mouse)Not determined67554435692607450Mouse
1300674Nidd3n_mnon-insulin-dependent diabetes mellitus 3 in NSY (mouse)Not determined67554435694225955Mouse
10412195Efw_mepididymal fat weight (mouse)Not determined67554435694225955Mouse
10043901Pfat5_mpredicted fat percentage 5 (mouse)Not determined675607306109607450Mouse
10412208Cypr4_mcytokine production 4 (mouse)Not determined675716503109716697Mouse
1357875Pfat2_mpredicted fat percentage 2 (mouse)Not determined676463949110464093Mouse
13824985Alh1_mamplitude of lateral head displacement 1 (mouse)67800000097000000Mouse
4141376Dbm1_mdiabetes modifier 1 (mouse)Not determined678629504121115387Mouse
14696731Pairq1_mP. aeruginosa infection resistance QTL 1 (mouse)681500000102200000Mouse
10043864T2dm4sa_mtype 2 diabetes mellitus 4 in SMXA RI mice (mouse)Not determined683713869147052561Mouse
11251720Ewc4_methanol withdrawal and consumption 4 (mouse)684122513118122513Mouse
1301687Mnic2_mmacronutrient intake (mouse)Not determined686806805113544602Mouse
1301744Hdlq11_mHDL QTL 11 (mouse)Not determined687503360121503555Mouse
1301262Gasa3_mgastritis type A susceptibility locus 3 (mouse)Not determined689005405123005603Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:445
Count of miRNA genes:235
Interacting mature miRNAs:246
Transcripts:ENSMUST00000054799, ENSMUST00000167550
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000054799   ⟹   ENSMUSP00000058483
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl690,301,219 - 90,305,449 (+)Ensembl
RefSeq Acc Id: ENSMUST00000167550   ⟹   ENSMUSP00000132052
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl690,302,116 - 90,305,449 (+)Ensembl
RefSeq Acc Id: NM_001358298   ⟹   NP_001345227
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39690,279,094 - 90,282,430 (+)NCBI
GRCm38690,302,112 - 90,305,448 (+)NCBI
Sequence:
RefSeq Acc Id: NM_177738   ⟹   NP_808406
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39690,278,201 - 90,282,430 (+)NCBI
GRCm38690,301,219 - 90,305,448 (+)NCBI
MGSCv37690,251,264 - 90,255,442 (+)RGD
Celera692,195,104 - 92,199,276 (+)RGD
cM Map6 ENTREZGENE
Sequence:
Protein Sequences
Protein RefSeqs NP_001345227 (Get FASTA)   NCBI Sequence Viewer  
  NP_808406 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH48671 (Get FASTA)   NCBI Sequence Viewer  
  BAC36665 (Get FASTA)   NCBI Sequence Viewer  
  EDK99281 (Get FASTA)   NCBI Sequence Viewer  
  Q8C5S3 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_808406   ⟸   NM_177738
- UniProtKB: Q8C5S3 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001345227   ⟸   NM_001358298
RefSeq Acc Id: ENSMUSP00000058483   ⟸   ENSMUST00000054799
RefSeq Acc Id: ENSMUSP00000132052   ⟸   ENSMUST00000167550

Promoters
RGD ID:6838982
Promoter ID:MM_KWN:46874
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Liver
Transcripts:UC009CXB.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36690,251,721 - 90,252,221 (+)MPROMDB
RGD ID:6890402
Promoter ID:EPDNEW_M8652
Type:initiation region
Name:BC048671_1
Description:Mus musculus cDNA sequence BC048671 , transcript variant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M8653  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38690,301,249 - 90,301,309EPDNEW
RGD ID:6890418
Promoter ID:EPDNEW_M8653
Type:initiation region
Name:BC048671_2
Description:Mus musculus cDNA sequence BC048671 , transcript variant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M8652  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38690,302,131 - 90,302,191EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2679261 AgrOrtholog
Ensembl Genes ENSMUSG00000049694 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Protein ENSMUSP00000058483 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000132052 ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000054799 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000167550 ENTREZGENE, UniProtKB/Swiss-Prot
InterPro C3orf22 UniProtKB/Swiss-Prot
KEGG Report mmu:243535 UniProtKB/Swiss-Prot
MGD MGI:2679261 ENTREZGENE
NCBI Gene 243535 ENTREZGENE
PANTHER PTHR37875 UniProtKB/Swiss-Prot
PhenoGen BC048671 PhenoGen
UniProt CC022_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE