Tafa1 (TAFA chemokine like family member 1) - Rat Genome Database
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Gene: Tafa1 (TAFA chemokine like family member 1) Mus musculus
Analyze
Symbol: Tafa1
Name: TAFA chemokine like family member 1
RGD ID: 1620466
MGI Page MGI
Description: Is expressed in brain; dorsal root ganglion; and spinal cord region. Orthologous to human TAFA1 (TAFA chemokine like family member 1).
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: C630007B19Rik; chemokine-like protein TAFA-1; Fam19; Fam19a1; FAM19A1 TAFA-1; family with sequence similarity 19, member A1; Tafa; Tafa-1
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39696,090,135 - 96,634,169 (+)NCBIGRCm39mm39
GRCm39 Ensembl696,090,135 - 96,634,159 (+)Ensembl
GRCm38696,113,154 - 96,657,204 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl696,113,154 - 96,657,198 (+)EnsemblGRCm38mm10GRCm38
MGSCv37696,063,148 - 96,607,191 (+)NCBIGRCm37mm9NCBIm37
MGSCv36696,078,617 - 96,622,660 (+)NCBImm8
Celera697,991,492 - 98,529,124 (+)NCBICelera
Cytogenetic Map6D3NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:14610273   PMID:15028294   PMID:16141072   PMID:16141073   PMID:17967808  
PMID:21873635   PMID:29453251   PMID:29799787   PMID:31689372   PMID:32123192  


Genomics

Comparative Map Data
Tafa1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39696,090,135 - 96,634,169 (+)NCBIGRCm39mm39
GRCm39 Ensembl696,090,135 - 96,634,159 (+)Ensembl
GRCm38696,113,154 - 96,657,204 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl696,113,154 - 96,657,198 (+)EnsemblGRCm38mm10GRCm38
MGSCv37696,063,148 - 96,607,191 (+)NCBIGRCm37mm9NCBIm37
MGSCv36696,078,617 - 96,622,660 (+)NCBImm8
Celera697,991,492 - 98,529,124 (+)NCBICelera
Cytogenetic Map6D3NCBI
TAFA1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl368,004,247 - 68,545,621 (+)EnsemblGRCh38hg38GRCh38
GRCh38367,991,544 - 68,546,056 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh37368,040,686 - 68,594,772 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36368,136,144 - 68,677,462 (+)NCBINCBI36hg18NCBI36
Build 34368,136,143 - 68,677,459NCBI
Celera367,995,186 - 68,536,291 (+)NCBI
Cytogenetic Map3p14.1NCBI
HuRef368,056,132 - 68,609,109 (+)NCBIHuRef
CHM1_1367,992,001 - 68,546,115 (+)NCBICHM1_1
Tafa1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.24128,738,028 - 129,244,223 (+)NCBI
Rnor_6.04128,818,468 - 128,942,088 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.04193,307,937 - 193,448,717 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.04193,279,249 - 193,279,417 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44131,051,719 - 131,171,835 (-)NCBIRGSC3.4rn4RGSC3.4
Celera4117,631,927 - 118,134,564 (+)NCBICelera
Cytogenetic Map4q34NCBI
Tafa1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542119,250,532 - 19,732,542 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542119,249,435 - 19,734,903 (-)NCBIChiLan1.0ChiLan1.0
TAFA1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1369,280,748 - 69,839,243 (+)NCBIpanpan1.1PanPan1.1panPan2
Mhudiblu_PPA_v0367,912,677 - 68,473,580 (+)NCBIMhudiblu_PPA_v0panPan3
TAFA1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl2023,131,438 - 23,618,979 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.12023,128,171 - 23,621,402 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
TAFA1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1349,446,627 - 49,969,255 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11349,443,726 - 49,970,760 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21354,878,399 - 55,001,259 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TAFA1
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12229,016,689 - 29,572,632 (+)NCBI
Tafa1
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247732,534,592 - 3,032,084 (+)NCBI

Position Markers
04.MMHAP17FB1.seq  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38696,581,500 - 96,581,686UniSTSGRCm38
MGSCv37696,531,494 - 96,531,680UniSTSGRCm37
Celera698,459,553 - 98,459,739UniSTS
Cytogenetic Map6D3UniSTS
Whitehead_YAC6 UniSTS
18.MMHAP10FF3.seq  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38696,544,732 - 96,544,905UniSTSGRCm38
MGSCv37696,494,726 - 96,494,899UniSTSGRCm37
Celera698,423,020 - 98,423,193UniSTS
Cytogenetic Map6D3UniSTS
Whitehead_YAC6 UniSTS
47.MMHAP9FLH5.seq  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38696,194,677 - 96,194,860UniSTSGRCm38
MGSCv37696,144,671 - 96,144,854UniSTSGRCm37
Celera698,073,016 - 98,073,199UniSTS
Cytogenetic Map6D3UniSTS
Whitehead_YAC6 UniSTS
D6Mit132  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38696,655,951 - 96,656,149UniSTSGRCm38
MGSCv37696,605,945 - 96,606,143UniSTSGRCm37
Celera698,527,878 - 98,528,076UniSTS
Cytogenetic Map6D3UniSTS
cM Map640.0UniSTS
Whitehead Genetic631.7UniSTS
Whitehead/MRC_RH6983.07UniSTS
Whitehead_YAC6 UniSTS
D6Mit191  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38696,413,461 - 96,413,651UniSTSGRCm38
MGSCv37696,363,455 - 96,363,645UniSTSGRCm37
Celera698,291,503 - 98,291,693UniSTS
Cytogenetic Map6D3UniSTS
cM Map638.5UniSTS
Whitehead Genetic631.7UniSTS
D6Mit68  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38696,330,435 - 96,330,583UniSTSGRCm38
MGSCv37696,280,429 - 96,280,577UniSTSGRCm37
Celera698,207,882 - 98,208,030UniSTS
Cytogenetic Map6D3UniSTS
cM Map638.5UniSTS
Whitehead Genetic631.7UniSTS
Whitehead/MRC_RH6983.07UniSTS
Whitehead_YAC6 UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
25440480Moaq2_mmodifier of alien QTL 2 (mouse)61117500000Mouse
26884414Bzwq12_mbi-zygomatic width QTL 12, 16 week (mouse)63400000139100000Mouse
4142126W3q3_mweight 3 weeks QTL 3 (mouse)Not determined450382396656149Mouse
4142361W10q11_mweight 10 weeks QTL 11 (mouse)Not determined450382396656149Mouse
4142271Egq8_mearly growth QTL 8 (mouse)Not determined450382396656149Mouse
4142232W6q4_mweight 6 weeks QTL 4 (mouse)Not determined450382396656149Mouse
10412157Fl1n_mfatty liver 1 in NSY (mouse)Not determined645314059128835032Mouse
4142259Tabw2_mtally ho associated body weight 2 (mouse)Not determined46935985136423692Mouse
25314319Histh6_mhistamine hypersensitivity 6 (mouse)648720000125360000Mouse
25314320Histh5_mhistamine hypersensitivity 5 (mouse)648720000148450000Mouse
1301962Eila2_methanol induced locomotor activity 2 (mouse)Not determined648726556125356785Mouse
1357683Igf1sl1_mIGF-1 serum levels 1 (mouse)Not determined652161713116155267Mouse
1301369Im4_mimmunoregulatory 4 (mouse)Not determined66348473897484905Mouse
1300650Bw18_mbody weight QTL 18 (mouse)Not determined666713869100714031Mouse
1301876Bits2_mbitterness sensitivity 2 (mouse)Not determined670425898104426034Mouse
1301813Skl3_mskeletal size (tail length) 3 (mouse)Not determined670425898104426034Mouse
1301034Egrm2_mearly growth rate (mouse)Not determined670425898104426034Mouse
1300869Stheal5_msoft tissue heal 5 (mouse)Not determined671575060105575178Mouse
1300954Fcsa1_mfemoral cross-sectional area 1 (mouse)Not determined671981024105981170Mouse
1301521Pas1c_mpulmonary adenoma susceptibility 1c (mouse)Not determined671981024105981170Mouse
13506930Recrq9_mrecombination rate in male meiosis QTL 9 (mouse)673500000134700000Mouse
1301320Ots1_movarian teratoma susceptibility 1 (mouse)Not determined675447583104503555Mouse
10043901Pfat5_mpredicted fat percentage 5 (mouse)Not determined675607306109607450Mouse
10412208Cypr4_mcytokine production 4 (mouse)Not determined675716503109716697Mouse
1357875Pfat2_mpredicted fat percentage 2 (mouse)Not determined676463949110464093Mouse
13824985Alh1_mamplitude of lateral head displacement 1 (mouse)67800000097000000Mouse
4141376Dbm1_mdiabetes modifier 1 (mouse)Not determined678629504121115387Mouse
14696731Pairq1_mP. aeruginosa infection resistance QTL 1 (mouse)681500000102200000Mouse
10043864T2dm4sa_mtype 2 diabetes mellitus 4 in SMXA RI mice (mouse)Not determined683713869147052561Mouse
11251720Ewc4_methanol withdrawal and consumption 4 (mouse)684122513118122513Mouse
1301687Mnic2_mmacronutrient intake (mouse)Not determined686806805113544602Mouse
1301744Hdlq11_mHDL QTL 11 (mouse)Not determined687503360121503555Mouse
1301262Gasa3_mgastritis type A susceptibility locus 3 (mouse)Not determined689005405123005603Mouse
1301244Ichs_mimmediate cutaneous hypersensitivity QTL (mouse)Not determined690795610124795846Mouse
11532719Sluc45_msusceptibility to lung cancer 45 (mouse)69260730698258933Mouse
4141578Obrq1_mobesity resistance QTL 1 (mouse)Not determined92607306112004738Mouse
11353842Bmiq4_mbody mass index QTL 4 (mouse)692607306146429238Mouse
1301292Cfbw2_mcystic fibrosis body weight 2 (mouse)Not determined695004651129004738Mouse
1300704Cia3_mcollagen induced arthritis QTL 3 (mouse)Not determined696347325130347522Mouse
11040599Lmr4b_mleishmaniasis resistance 4b (mouse)696347325130347522Mouse
4141940W6q5_mweight 6 weeks QTL 5 (mouse)Not determined96655951146633626Mouse
4142416Egq11_mearly growth QTL 11 (mouse)Not determined96655951146633626Mouse
1357555Tesq2_mtestis weight QTL 2 (mouse)Not determined696655951146633626Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1180
Count of miRNA genes:543
Interacting mature miRNAs:627
Transcripts:ENSMUST00000075080, ENSMUST00000122120, ENSMUST00000125951, ENSMUST00000129844
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000075080   ⟹   ENSMUSP00000074589
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl696,115,311 - 96,656,467 (+)Ensembl
RefSeq Acc Id: ENSMUST00000122120   ⟹   ENSMUSP00000113152
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl696,113,154 - 96,657,198 (+)Ensembl
RefSeq Acc Id: ENSMUST00000125951
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl696,113,242 - 96,131,950 (+)Ensembl
RefSeq Acc Id: ENSMUST00000129844
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl696,114,649 - 96,115,917 (+)Ensembl
RefSeq Acc Id: NM_182808   ⟹   NP_877960
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39696,090,135 - 96,634,159 (+)NCBI
GRCm38696,113,154 - 96,657,198 (+)NCBI
MGSCv37696,063,148 - 96,607,191 (+)RGD
Celera697,991,492 - 98,529,125 (+)ENTREZGENE
cM Map6 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_017321638   ⟹   XP_017177127
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39696,090,683 - 96,634,169 (+)NCBI
GRCm38696,113,702 - 96,657,204 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036166225   ⟹   XP_036022118
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39696,090,683 - 96,634,169 (+)NCBI
Reference Sequences
RefSeq Acc Id: NP_877960   ⟸   NM_182808
- Peptide Label: precursor
- UniProtKB: Q7TPG8 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_017177127   ⟸   XM_017321638
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: ENSMUSP00000074589   ⟸   ENSMUST00000075080
RefSeq Acc Id: ENSMUSP00000113152   ⟸   ENSMUST00000122120
RefSeq Acc Id: XP_036022118   ⟸   XM_036166225
- Peptide Label: isoform X2

Promoters
RGD ID:6890506
Promoter ID:EPDNEW_M8704
Type:initiation region
Name:Fam19a1_1
Description:Mus musculus family with sequence similarity 19, member A1 ,mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38696,113,159 - 96,113,219EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2443695 AgrOrtholog
Ensembl Genes ENSMUSG00000059187 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Protein ENSMUSP00000074589 UniProtKB/Swiss-Prot
  ENSMUSP00000113152 ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000075080 UniProtKB/Swiss-Prot
  ENSMUST00000122120 ENTREZGENE, UniProtKB/Swiss-Prot
InterPro Chemokine-like_FAM19A2 UniProtKB/Swiss-Prot
KEGG Report mmu:320265 UniProtKB/Swiss-Prot
MGD MGI:2443695 ENTREZGENE
NCBI Gene 320265 ENTREZGENE
Pfam TAFA UniProtKB/Swiss-Prot
PhenoGen Tafa1 PhenoGen
UniProt Q7TPG8 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary A2RSN6 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-02-26 Tafa1  TAFA chemokine like family member 1  Fam19a1  family with sequence similarity 19, member A1  Symbol and/or name change 5135510 APPROVED
2011-08-17 Fam19a1  family with sequence similarity 19, member A1  Fam19a1  family with sequence similarity 19, member A1  Symbol and/or name change 5135510 APPROVED