Tafa1 (TAFA chemokine like family member 1) - Rat Genome Database
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Gene: Tafa1 (TAFA chemokine like family member 1) Mus musculus
Analyze
Symbol: Tafa1
Name: TAFA chemokine like family member 1
RGD ID: 1620466
MGI Page MGI
Description: Is expressed in brain; dorsal root ganglion; and spinal cord region. Orthologous to human TAFA1 (TAFA chemokine like family member 1).
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: C630007B19Rik; chemokine-like protein TAFA-1; Fam19; Fam19a1; FAM19A1 TAFA-1; family with sequence similarity 19, member A1; Tafa; Tafa-1
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39696,090,135 - 96,634,169 (+)NCBIGRCm39mm39
GRCm39 Ensembl696,090,135 - 96,634,159 (+)Ensembl
GRCm38696,113,154 - 96,657,204 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl696,113,154 - 96,657,198 (+)EnsemblGRCm38mm10GRCm38
MGSCv37696,063,148 - 96,607,191 (+)NCBIGRCm37mm9NCBIm37
MGSCv36696,078,617 - 96,622,660 (+)NCBImm8
Celera697,991,492 - 98,529,124 (+)NCBICelera
Cytogenetic Map6D3NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View
References

Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:14610273   PMID:15028294   PMID:16141072   PMID:16141073   PMID:17967808  
PMID:21873635   PMID:29453251   PMID:29799787   PMID:31689372   PMID:32123192  


Genomics

Comparative Map Data
Tafa1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39696,090,135 - 96,634,169 (+)NCBIGRCm39mm39
GRCm39 Ensembl696,090,135 - 96,634,159 (+)Ensembl
GRCm38696,113,154 - 96,657,204 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl696,113,154 - 96,657,198 (+)EnsemblGRCm38mm10GRCm38
MGSCv37696,063,148 - 96,607,191 (+)NCBIGRCm37mm9NCBIm37
MGSCv36696,078,617 - 96,622,660 (+)NCBImm8
Celera697,991,492 - 98,529,124 (+)NCBICelera
Cytogenetic Map6D3NCBI
TAFA1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl368,004,247 - 68,545,621 (+)EnsemblGRCh38hg38GRCh38
GRCh38367,991,544 - 68,546,056 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh37368,040,686 - 68,594,772 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36368,136,144 - 68,677,462 (+)NCBINCBI36hg18NCBI36
Build 34368,136,143 - 68,677,459NCBI
Celera367,995,186 - 68,536,291 (+)NCBI
Cytogenetic Map3p14.1NCBI
HuRef368,056,132 - 68,609,109 (+)NCBIHuRef
CHM1_1367,992,001 - 68,546,115 (+)NCBICHM1_1
Tafa1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.24128,738,028 - 129,244,223 (+)NCBI
Rnor_6.04128,818,468 - 128,942,088 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.04193,307,937 - 193,448,717 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.04193,279,249 - 193,279,417 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44131,051,719 - 131,171,835 (-)NCBIRGSC3.4rn4RGSC3.4
Celera4117,631,927 - 118,134,564 (+)NCBICelera
Cytogenetic Map4q34NCBI
Tafa1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542119,250,532 - 19,732,542 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542119,249,435 - 19,734,903 (-)NCBIChiLan1.0ChiLan1.0
TAFA1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1369,280,748 - 69,839,243 (+)NCBIpanpan1.1PanPan1.1panPan2
Mhudiblu_PPA_v0367,912,677 - 68,473,580 (+)NCBIMhudiblu_PPA_v0panPan3
TAFA1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl2023,131,438 - 23,618,979 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.12023,128,171 - 23,621,402 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
TAFA1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1349,446,627 - 49,969,255 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11349,443,726 - 49,970,760 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21354,878,399 - 55,001,259 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TAFA1
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12229,016,689 - 29,572,632 (+)NCBI
Tafa1
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247732,534,592 - 3,032,084 (+)NCBI

Position Markers
04.MMHAP17FB1.seq  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38696,581,500 - 96,581,686UniSTSGRCm38
MGSCv37696,531,494 - 96,531,680UniSTSGRCm37
Celera698,459,553 - 98,459,739UniSTS
Cytogenetic Map6D3UniSTS
Whitehead_YAC6 UniSTS
18.MMHAP10FF3.seq  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38696,544,732 - 96,544,905UniSTSGRCm38
MGSCv37696,494,726 - 96,494,899UniSTSGRCm37
Celera698,423,020 - 98,423,193UniSTS
Cytogenetic Map6D3UniSTS
Whitehead_YAC6 UniSTS
47.MMHAP9FLH5.seq  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38696,194,677 - 96,194,860UniSTSGRCm38
MGSCv37696,144,671 - 96,144,854UniSTSGRCm37
Celera698,073,016 - 98,073,199UniSTS
Cytogenetic Map6D3UniSTS
Whitehead_YAC6 UniSTS
D6Mit132  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38696,655,951 - 96,656,149UniSTSGRCm38
MGSCv37696,605,945 - 96,606,143UniSTSGRCm37
Celera698,527,878 - 98,528,076UniSTS
Cytogenetic Map6D3UniSTS
cM Map640.0UniSTS
Whitehead Genetic631.7UniSTS
Whitehead/MRC_RH6983.07UniSTS
Whitehead_YAC6 UniSTS
D6Mit191  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38696,413,461 - 96,413,651UniSTSGRCm38
MGSCv37696,363,455 - 96,363,645UniSTSGRCm37
Celera698,291,503 - 98,291,693UniSTS
Cytogenetic Map6D3UniSTS
cM Map638.5UniSTS
Whitehead Genetic631.7UniSTS
D6Mit68  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38696,330,435 - 96,330,583UniSTSGRCm38
MGSCv37696,280,429 - 96,280,577UniSTSGRCm37
Celera698,207,882 - 98,208,030UniSTS
Cytogenetic Map6D3UniSTS
cM Map638.5UniSTS
Whitehead Genetic631.7UniSTS
Whitehead/MRC_RH6983.07UniSTS
Whitehead_YAC6 UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
25440480Moaq2_mmodifier of alien QTL 2 (mouse)61117500000Mouse
26884414Bzwq12_mbi-zygomatic width QTL 12, 16 week (mouse)63400000139100000Mouse
4142126W3q3_mweight 3 weeks QTL 3 (mouse)Not determined450382396656149Mouse
4142361W10q11_mweight 10 weeks QTL 11 (mouse)Not determined450382396656149Mouse
4142271Egq8_mearly growth QTL 8 (mouse)Not determined450382396656149Mouse
4142232W6q4_mweight 6 weeks QTL 4 (mouse)Not determined450382396656149Mouse
10412157Fl1n_mfatty liver 1 in NSY (mouse)Not determined645314059128835032Mouse
4142259Tabw2_mtally ho associated body weight 2 (mouse)Not determined46935985136423692Mouse
25314319Histh6_mhistamine hypersensitivity 6 (mouse)648720000125360000Mouse
25314320Histh5_mhistamine hypersensitivity 5 (mouse)648720000148450000Mouse
1301962Eila2_methanol induced locomotor activity 2 (mouse)Not determined648726556125356785Mouse
1357683Igf1sl1_mIGF-1 serum levels 1 (mouse)Not determined652161713116155267Mouse
1301369Im4_mimmunoregulatory 4 (mouse)Not determined66348473897484905Mouse
1300650Bw18_mbody weight QTL 18 (mouse)Not determined666713869100714031Mouse
1301876Bits2_mbitterness sensitivity 2 (mouse)Not determined670425898104426034Mouse
1301813Skl3_mskeletal size (tail length) 3 (mouse)Not determined670425898104426034Mouse
1301034Egrm2_mearly growth rate (mouse)Not determined670425898104426034Mouse
1300869Stheal5_msoft tissue heal 5 (mouse)Not determined671575060105575178Mouse
1300954Fcsa1_mfemoral cross-sectional area 1 (mouse)Not determined671981024105981170Mouse
1301521Pas1c_mpulmonary adenoma susceptibility 1c (mouse)Not determined671981024105981170Mouse
13506930Recrq9_mrecombination rate in male meiosis QTL 9 (mouse)673500000134700000Mouse
1301320Ots1_movarian teratoma susceptibility 1 (mouse)Not determined675447583104503555Mouse
10043901Pfat5_mpredicted fat percentage 5 (mouse)Not determined675607306109607450Mouse
10412208Cypr4_mcytokine production 4 (mouse)Not determined675716503109716697Mouse
1357875Pfat2_mpredicted fat percentage 2 (mouse)Not determined676463949110464093Mouse
13824985Alh1_mamplitude of lateral head displacement 1 (mouse)67800000097000000Mouse
4141376Dbm1_mdiabetes modifier 1 (mouse)Not determined678629504121115387Mouse
14696731Pairq1_mP. aeruginosa infection resistance QTL 1 (mouse)681500000102200000Mouse
10043864T2dm4sa_mtype 2 diabetes mellitus 4 in SMXA RI mice (mouse)Not determined683713869147052561Mouse
11251720Ewc4_methanol withdrawal and consumption 4 (mouse)684122513118122513Mouse
1301687Mnic2_mmacronutrient intake (mouse)Not determined686806805113544602Mouse
1301744Hdlq11_mHDL QTL 11 (mouse)Not determined687503360121503555Mouse
1301262Gasa3_mgastritis type A susceptibility locus 3 (mouse)Not determined689005405123005603Mouse
1301244Ichs_mimmediate cutaneous hypersensitivity QTL (mouse)Not determined690795610124795846Mouse
11532719Sluc45_msusceptibility to lung cancer 45 (mouse)69260730698258933Mouse
4141578Obrq1_mobesity resistance QTL 1 (mouse)Not determined92607306112004738Mouse
11353842Bmiq4_mbody mass index QTL 4 (mouse)692607306146429238Mouse
1301292Cfbw2_mcystic fibrosis body weight 2 (mouse)Not determined695004651129004738Mouse
1300704Cia3_mcollagen induced arthritis QTL 3 (mouse)Not determined696347325130347522Mouse
11040599Lmr4b_mleishmaniasis resistance 4b (mouse)696347325130347522Mouse
4141940W6q5_mweight 6 weeks QTL 5 (mouse)Not determined96655951146633626Mouse
4142416Egq11_mearly growth QTL 11 (mouse)Not determined96655951146633626Mouse
1357555Tesq2_mtestis weight QTL 2 (mouse)Not determined696655951146633626Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1180
Count of miRNA genes:543
Interacting mature miRNAs:627
Transcripts:ENSMUST00000075080, ENSMUST00000122120, ENSMUST00000125951, ENSMUST00000129844
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000075080   ⟹   ENSMUSP00000074589
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl696,115,311 - 96,656,467 (+)Ensembl
RefSeq Acc Id: ENSMUST00000122120   ⟹   ENSMUSP00000113152
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl696,113,154 - 96,657,198 (+)Ensembl
RefSeq Acc Id: ENSMUST00000125951
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl696,113,242 - 96,131,950 (+)Ensembl
RefSeq Acc Id: ENSMUST00000129844
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl696,114,649 - 96,115,917 (+)Ensembl
RefSeq Acc Id: NM_182808   ⟹   NP_877960
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39696,090,135 - 96,634,159 (+)NCBI
GRCm38696,113,154 - 96,657,198 (+)NCBI
MGSCv37696,063,148 - 96,607,191 (+)RGD
Celera697,991,492 - 98,529,125 (+)ENTREZGENE
cM Map6 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_017321638   ⟹   XP_017177127
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39696,090,683 - 96,634,169 (+)NCBI
GRCm38696,113,702 - 96,657,204 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036166225   ⟹   XP_036022118
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39696,090,683 - 96,634,169 (+)NCBI
Reference Sequences
RefSeq Acc Id: NP_877960   ⟸   NM_182808
- Peptide Label: precursor
- UniProtKB: Q7TPG8 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_017177127   ⟸   XM_017321638
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: ENSMUSP00000074589   ⟸   ENSMUST00000075080
RefSeq Acc Id: ENSMUSP00000113152   ⟸   ENSMUST00000122120
RefSeq Acc Id: XP_036022118   ⟸   XM_036166225
- Peptide Label: isoform X2

Promoters
RGD ID:6890506
Promoter ID:EPDNEW_M8704
Type:initiation region
Name:Fam19a1_1
Description:Mus musculus family with sequence similarity 19, member A1 ,mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38696,113,159 - 96,113,219EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2443695 AgrOrtholog
Ensembl Genes ENSMUSG00000059187 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Protein ENSMUSP00000074589 UniProtKB/Swiss-Prot
  ENSMUSP00000113152 ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000075080 UniProtKB/Swiss-Prot
  ENSMUST00000122120 ENTREZGENE, UniProtKB/Swiss-Prot
InterPro Chemokine-like_FAM19A2 UniProtKB/Swiss-Prot
KEGG Report mmu:320265 UniProtKB/Swiss-Prot
MGD MGI:2443695 ENTREZGENE
NCBI Gene 320265 ENTREZGENE
Pfam TAFA UniProtKB/Swiss-Prot
PhenoGen Tafa1 PhenoGen
UniProt Q7TPG8 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary A2RSN6 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-02-26 Tafa1  TAFA chemokine like family member 1  Fam19a1  family with sequence similarity 19, member A1  Symbol and/or name change 5135510 APPROVED
2011-08-17 Fam19a1  family with sequence similarity 19, member A1  Fam19a1  family with sequence similarity 19, member A1  Symbol and/or name change 5135510 APPROVED