Gm1527 (predicted gene 1527) - Rat Genome Database

Name: Gm1527
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Advanced Search (OLGA)

Gene: Gm1527 (predicted gene 1527) Mus musculus

Analyze

No known orthologs.

Symbol:

Gm1527

Name:

predicted gene 1527

RGD ID:

1620414

MGI Page

MGI

Description:

Predicted to enable GTPase activator activity.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

gene model 1136, (NCBI); Gm1136; hypothetical protein LOC385263; uncharacterized protein LOC385263

RGD Orthologs

Alliance Orthologs

More Info

homologs ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Other homologs ²				less info ...
Homo sapiens (human):	ARHGAP20 (Rho GTPase activating protein 20)	HGNC	Treefam
Alliance orthologs ³
Rattus norvegicus (Norway rat):	Tgap1l5 (GTPase activating protein testicular GAP1 like 5)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Rattus norvegicus (Norway rat):	Tgap1 (GTPase activating protein testicular GAP1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoInspector\|PANTHER\|SonicParanoid)
Rattus norvegicus (Norway rat):	Tgap1l11 (GTPase activating protein testicular GAP1 like 11)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoInspector\|PANTHER)
Drosophila melanogaster (fruit fly):	RhoGAP71E	Alliance	DIOPT (Ensembl Compara\|OrthoInspector\|PANTHER)
Caenorhabditis elegans (roundworm):	rga-2	Alliance	DIOPT (Ensembl Compara\|OrthoInspector\|PANTHER)

Latest Assembly:

GRCm39 - Mouse Genome Assembly GRCm39

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	3	28,946,768 - 28,980,874 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	3	28,946,766 - 28,980,873 (+)	Ensembl		GRCm39 Ensembl
GRCm38	3	28,892,619 - 28,926,725 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	3	28,892,617 - 28,926,724 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	3	28,791,539 - 28,825,646 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	3	29,083,690 - 29,117,797 (+)	NCBI		MGSCv36	mm8
Cytogenetic Map	3	A3	NCBI
cM Map	3	12.37	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Gene Ontology Annotations Click to see Annotation Detail View

Cellular Component

cellular_component (ND)

Molecular Function

GTPase activator activity (IBA)

References

References - curated

#	Reference Title	Reference Citation
1.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:10349636	PMID:11042159	PMID:11076861	PMID:11217851	PMID:12466851	PMID:16141072	PMID:16141073	PMID:21873635

Genomics

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	76
Count of miRNA genes:	75
Interacting mature miRNAs:	76
Transcripts:	ENSMUST00000099170
Prediction methods:	Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCm39)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
4142399	Aec1_m	autoimmune exocrinopathy 1 (mouse)			Not determined			7586174	102690034	Mouse
4141116	Lgaq4_m	late growth adjusted QTL 4 (mouse)			Not determined			10249221	83184946	Mouse
4141563	Lgq3_m	late growth QTL 3 (mouse)			Not determined			10249221	83184946	Mouse
1357584	Splq6_m	spleen weight QTL 6 (mouse)			Not determined		3	10249221	83184946	Mouse
1301114	Ssial2_m	susceptibility to sialadenitis 2 (mouse)			Not determined		3	20174862	54180103	Mouse
26884436	Zlq3_m	zygomatic length QTL 3, 10 week (mouse)					3	3265060	142405761	Mouse
12904010	Cfq8_m	conditioned fear QTL 8 (mouse)					3	24768232	31332103	Mouse
26884427	Cvht4_m	cranial vault height 4, 10 week (mouse)					3	16054164	109707316	Mouse
4142092	Tgq13_m	triglyceride QTL 13 (mouse)			Not determined			18288168	52288168	Mouse
1357440	Hrtpq1_m	heart weight percentage QTL 1 (mouse)			Not determined		3	10249221	83184946	Mouse
4141255	W10q3_m	weight 10 weeks QTL 3 (mouse)			Not determined			10249221	83184946	Mouse
1558925	Hivan1_m	HIV-associated nephropathy 1 (mouse)			Not determined		3	7586174	68716946	Mouse
39128206	Lwq18_m	liver weight QTL 18 (mouse)					3	10249221	83184946	Mouse
13207570	Tcq12_m	total cholesterol QTL 12 (mouse)					3	16504164	130163649	Mouse
1300559	Thypr3_m	thymocyte proliferative response 3 (mouse)			Not determined		3	4525419	38525519	Mouse
26884422	Cvht7_m	cranial vault height 7, 16 week (mouse)					3	28954149	118893649	Mouse
1301358	Eae20_m	experimental allergic encephalomyelitis 20 (mouse)			Not determined		3	11630453	45630591	Mouse

Markers in Region

UniSTS:225387

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	3	31,684,584 - 31,684,732	UniSTS	GRCm38
GRCm38	3	28,898,515 - 28,898,663	UniSTS	GRCm38
MGSCv37	3	31,583,506 - 31,583,654	UniSTS	GRCm37
MGSCv37	3	28,797,437 - 28,797,585	UniSTS	GRCm37
Celera	3	31,586,787 - 31,586,935	UniSTS
Cytogenetic Map	3	A3	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001033479	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017319633	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017319634	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_030252663	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_030252664	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_030252665	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_036163149	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC132583	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK132999	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSMUST00000099170 ⟹ ENSMUSP00000096773

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	3	28,946,766 - 28,980,873 (+)	Ensembl
GRCm38.p6 Ensembl	3	28,892,617 - 28,926,724 (+)	Ensembl

RefSeq Acc Id:

NM_001033479 ⟹ NP_001028651

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	3	28,946,768 - 28,980,874 (+)	NCBI
GRCm38	3	28,892,619 - 28,926,725 (+)	NCBI
MGSCv37	3	28,791,539 - 28,825,646 (+)	RGD
cM Map	3		ENTREZGENE

Sequence:

show sequence

AGTGGTTTGCTGACCAACAGCAGTCTCCAGTTCGGTATTTAGTGCCTAGAAGAAAAGCAATAAT
TTATAGTCTTTGACTGGTTCTCAATTCCAGGCTCCACTGTAAAGGTGGAGACCTGGATCAGGAG
TATCTTTTTTTTTTCTATATGGAAACCATTGTGAAGAAAGACATGGGAGGAATCCATCGAACCT
TGCTGTGCCAAGGCCCCGTGAAACTCAAATGTTTCCAGAAAACGAAAAAAAAAAGACATCTCTC
CTTATTTAATGATGTCTTGGTTGTGTCGCGTATCCTGAATAAAAGAGAGTTTAAGATAAAGTGC
ATCATCCCACTGCATCTCCTGTGGGTGGTGGTGGATGATGTGGCCCAACGCAGAAAAAATGAAA
TCTGTACTTGCAAGACCCTTTACCTGCATTGTCCCAATGGACACTTTTGGGCCACCTTTCGTTC
ACAAGAACAGAAAGATCAGTGGCACTATTTTCTCCAAAGATCAATTCATGAAGCCAAGAAGGGT
ATCAAGACAAATTTATCATTGAAGATACACACTGAAGACATCCCAACCTGTGACAGTACTTTAT
CTGTAACAGCAACAAACCTCGATACAGTGAATGATATAATCGAGAAGCTGCTACCAATGATAAG
AATGCGTAACAGTGAAGATTACCAATTGTGGTTCAGTCATAGCCGTGAGGAAGCTCCAAGAGCA
CTCCAAGGCTTCAAGTATCCACATATTATTATCATGACCAACTTTCAAAACACCTGCAATGGAT
CAAACTCAAGAATTTTAACAGCTTTTCCTGCCTTACCTGGGATGTTTGTGCAAGACCTAAACTC
AGATGCTCAGGGACATTTCTTCTTAAAGCCCAGACAGCCAGCTATAAACCAGCAGCAAAGTGCA
GAGGAAAGTCATTCTAAGATACAAAGACCAGTTTTGACATCTTGCTTCCACAGGGGCTCTGTGC
CCCACCAAGATCAAGTGTGTACTGTTCCTACAGCTAATAATGGAAAACTCTTCGGAACAGAACT
GAGTTGCATCTATCATGAGGGAAAATGGCCCAAATTAATTGTGGACATTCTGTCAGTCATAAGG
AAGCAAGGCCCTTCAACAGAGGGCATATTCGTGATTGCTCCTGAAGAGACATCATGCAAAGCCC
TAAAAGAGAAATTAGAATCAGGGGAAGAATTAGACCTGAAAAAATTCTCGGTGCACGAAGTTGC
TTGGATACTCAAGGAATTCCTTGGACACATTAAAGGCTGTGTGCTGACCTCGACATTATATGAA
CAGTGGCTTGATGTCCCCAACAAGGTCAATAACAAAGACAAATTAAGAGCAGTAAAGAGTCTTT
TAGATAAACTTCCTCTTGAAAATGCTGCTCTGCTGGGAAACCTTTTTAGGATACTCCATACAAT
TGCAAGCAGTTCTTCCATTAACAAAATGAAACCTTACAATATATCTACCGGAATAGCATCATCC
ATCTTATGGCTTCCTAGCTACCGCAAGGTGATAAATGATATTGACCAAAAGATTTCTCTCATAA
CTTTTATGATCGAGAACTCTCCTGAAATTTTTGGAATTGACATGGTTTGGTATGAAACCTCACT
TTTTTATCCACAAGAAGCAAAGGCCTCATGTTCCCAGAATGCTACATCTAACACTGGGAACATA
AAGGAAACAGAACCTGAACTCAGCAGCTGCCCCAGTGGGAGGACACACACCCCTGGACATTATG
CACGGCAGATAAGTCCAGCTGCTCCTCTTGTGTGTGAGAGTATTATAGATGCACAGAAAGATGA
AGGCAATGCCTATATAACCCAACACGAACCTTCTCCTCCAGCAGTAACGCAAAATCGAGAGTCA
ATGAACCAAGTTCAACATACAACTTTCTACAACAGAAACTTGGTTATGACTAAAGAAAGTGTCG
ACCCTTGTATTTCAATGTTCCCTTCTACCTCCCACTCAAAGAAGGCAGAAGAAATTATTAGAAG
AAACAACTTCAGGTTTCTTTTTAACCATACTTATTTGGTACAAGTAGTTTCATTCACTATACTT
ATTTTATGTTGTATAATCCATTTTGTAATTAATTATAATAAATGGCATTAAATTTTGTTATATT
GCTTATA

hide sequence

RefSeq Acc Id:

XM_017319633 ⟹ XP_017175122

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	3	28,949,690 - 28,980,874 (+)	NCBI
GRCm38	3	28,895,541 - 28,926,725 (+)	NCBI

Sequence:

show sequence

ACTTGTTCTGTTAGGTGGAGACCTGGATCAGGAGTATCTTTTTTTTTTCTATATGGAAACCATT
GTGAAGAAAGACATGGGAGGAATCCATCGAACCTTGCTGTGCCAAGGCCCCGTGAAACTCAAAT
GTTTCCAGAAAACGAAAAAAAAAAGACATCTCTCCTTATTTAATGATGTCTTGGTTGTGTCGCG
TATCCTGAATAAAAGAGAGTTTAAGATAAAGTGCATCATCCCACTGCATCTCCTGTGGGTGGTG
GTGGATGATGTGGCCCAACGCAGAAAAAATGAAATCTGTACTTGCAAGACCCTTTACCTGCATT
GTCCCAATGGACACTTTTGGGCCACCTTTCGTTCACAAGAACAGAAAGATCAGTGGCACTATTT
TCTCCAAAGATCAATTCATGAAGCCAAGAAGGGTATCAAGACAAATTTATCATTGAAGATACAC
ACTGAAGACATCCCAACCTGTGACAGTACTTTATCTGTAACAGCAACAAACCTCGATACAGTGA
ATGATATAATCGAGAAGCTGCTACCAATGATAAGAATGCGTAACAGTGAAGATTACCAATTGTG
GTTCAGTCATAGCCGTGAGGAAGCTCCAAGAGCACTCCAAGGCTTCAAGTATCCACATATTATT
ATCATGACCAACTTTCAAAACACCTGCAATGGATCAAACTCAAGAATTTTAACAGCTTTTCCTG
CCTTACCTGGGATGTTTGTGCAAGACCTAAACTCAGATGCTCAGGGACATTTCTTCTTAAAGCC
CAGACAGCCAGCTATAAACCAGCAGCAAAGTGCAGAGGAAAGTCATTCTAAGATACAAAGACCA
GTTTTGACATCTTGCTTCCACAGGGGCTCTGTGCCCCACCAAGATCAAGTGTGTACTGTTCCTA
CAGCTAATAATGGAAAACTCTTCGGAACAGAACTGAGTTGCATCTATCATGAGGGAAAATGGCC
CAAATTAATTGTGGACATTCTGTCAGTCATAAGGAAGCAAGGCCCTTCAACAGAGGGCATATTC
GTGATTGCTCCTGAAGAGACATCATGCAAAGCCCTAAAAGAGAAATTAGAATCAGGGGAAGAAT
TAGACCTGAAAAAATTCTCGGTGCACGAAGTTGCTTGGATACTCAAGGAATTCCTTGGACACAT
TAAAGGCTGTGTGCTGACCTCGACATTATATGAACAGTGGCTTGATGTCCCCAACAAGGTCAAT
AACAAAGACAAATTAAGAGCAGTAAAGAGTCTTTTAGATAAACTTCCTCTTGAAAATGCTGCTC
TGCTGGGAAACCTTTTTAGGATACTCCATACAATTGCAAGCAGTTCTTCCATTAACAAAATGAA
ACCTTACAATATATCTACCGGAATAGCATCATCCATCTTATGGCTTCCTAGCTACCGCAAGGTG
ATAAATGATATTGACCAAAAGATTTCTCTCATAACTTTTATGATCGAGAACTCTCCTGAAATTT
TTGGAATTGACATGGTTTGGTATGAAACCTCACTTTTTTATCCACAAGAAGCAAAGGCCTCATG
TTCCCAGAATGCTACATCTAACACTGGGAACATAAAGGAAACAGAACCTGAACTCAGCAGCTGC
CCCAGTGGGAGGACACACACCCCTGGACATTATGCACGGCAGATAAGTCCAGCTGCTCCTCTTG
TGTGTGAGAGTATTATAGATGCACAGAAAGATGAAGGCAATGCCTATATAACCCAACACGAACC
TTCTCCTCCAGCAGTAACGCAAAATCGAGAGTCAATGAACCAAGTTCAACATACAACTTTCTAC
AACAGAAACTTGGTTATGACTAAAGAAAGTGTCGACCCTTGTATTTCAATGTTCCCTTCTACCT
CCCACTCAAAGAAGGCAGAAGAAATTATTAGAAGAAACAACTTCAGGTTTCTTTTTAACCATAC
TTATTTGGTACAAGTAGTTTCATTCACTATACTTATTTTATGTTGTATAATCCATTTTGTAATT
AATTATAATAAATGGCATTAAATTTTGTTATATTGCTTATA

hide sequence

RefSeq Acc Id:

XM_017319634 ⟹ XP_017175123

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	3	28,957,543 - 28,980,868 (+)	NCBI
GRCm38	3	28,903,394 - 28,926,719 (+)	NCBI

Sequence:

show sequence

ACCTCGATACAGTGAATGATATAATCGAGAAGCTGCTACCAATGATAAGAATGCGTTGAAGATT
ACCAATTGTGGTTCAGTCATAGCCGTGAGGAAGCTCCAAGAGCACTCCAAGGCTTCAAGTATCC
ACATATTATTATCATGACCAACTTTCAAAACACCTGCAATGGATCAAACTCAAGAATTTTAACA
GCTTTTCCTGCCTTACCTGGGATGTTTGTGCAAGACCTAAACTCAGATGCTCAGGGACATTTCT
TCTTAAAGCCCAGACAGCCAGCTATAAACCAGCAGCAAAGTGCAGAGGAAAGTCATTCTAAGAT
ACAAAGACCAGTTTTGACATCTTGCTTCCACAGGGGCTCTGTGCCCCACCAAGATCAAGTGTGT
ACTGTTCCTACAGCTAATAATGGAAAACTCTTCGGAACAGAACTGAGTTGCATCTATCATGAGG
GAAAATGGCCCAAATTAATTGTGGACATTCTGTCAGTCATAAGGAAGCAAGGCCCTTCAACAGA
GGGCATATTCGTGATTGCTCCTGAAGAGACATCATGCAAAGCCCTAAAAGAGAAATTAGAATCA
GGGGAAGAATTAGACCTGAAAAAATTCTCGGTGCACGAAGTTGCTTGGATACTCAAGGAATTCC
TTGGACACATTAAAGGCTGTGTGCTGACCTCGACATTATATGAACAGTGGCTTGATGTCCCCAA
CAAGGTCAATAACAAAGACAAATTAAGAGCAGTAAAGAGTCTTTTAGATAAACTTCCTCTTGAA
AATGCTGCTCTGCTGGGAAACCTTTTTAGGATACTCCATACAATTGCAAGCAGTTCTTCCATTA
ACAAAATGAAACCTTACAATATATCTACCGGAATAGCATCATCCATCTTATGGCTTCCTAGCTA
CCGCAAGGTGATAAATGATATTGACCAAAAGATTTCTCTCATAACTTTTATGATCGAGAACTCT
CCTGAAATTTTTGGAATTGACATGGTTTGGTATGAAACCTCACTTTTTTATCCACAAGAAGCAA
AGGCCTCATGTTCCCAGAATGCTACATCTAACACTGGGAACATAAAGGAAACAGAACCTGAACT
CAGCAGCTGCCCCAGTGGGAGGACACACACCCCTGGACATTATGCACGGCAGATAAGTCCAGCT
GCTCCTCTTGTGTGTGAGAGTATTATAGATGCACAGAAAGATGAAGGCAATGCCTATATAACCC
AACACGAACCTTCTCCTCCAGCAGTAACGCAAAATCGACAGGAGTCAATGAACCAAGTTCAACA
TACAACTTTCTACAACAGAAACTTGGTTATGACTAAAGAAAGTGTCGACCCTTGTATTTCAATG
TTCCCTTCTACCTCCCACTCAAAGAAGGCAGAAGAAATTATTAGAAGAAACAACTTCAGGTTTC
TTTTTAACCATACTTATTTGGTACAAGTAGTTTCATTCACTATACTTATTTTATGTTGTATAAT
CCATTTTGTAATTAATTATAATAAATGGCATTAAATTTTGTTATATTG

hide sequence

RefSeq Acc Id:

XM_030252663 ⟹ XP_030108523

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	3	28,949,690 - 28,980,868 (+)	NCBI
GRCm38	3	28,895,541 - 28,926,719 (+)	NCBI

Sequence:

show sequence

ACTTGTTCTGTTAGGTGGAGACCTGGATCAGGAGTATCTTTTTTTTTTCTATATGGAAACCATT
GTGAAGAAAGACATGGGAGGAATCCATCGAACCTTGCTGTGCCAAGGCCCCGTGAAACTCAAAT
GTTTCCAGAAAACGAAAAAAAAAAGACATCTCTCCTTATTTAATGATGTCTTGGTTGTGTCGCG
TATCCTGAATAAAAGAGAGTTTAAGATAAAGTGCATCATCCCACTGCATCTCCTGTGGGTGGTG
GTGGATGATGTGGCCCAACGCAGAAAAAATGAAATCTGTACTTGCAAGACCCTTTACCTGCATT
GTCCCAATGGACACTTTTGGGCCACCTTTCGTTCACAAGAACAGAAAGATCAGTGGCACTATTT
TCTCCAAAGATCAATTCATGAAGCCAAGAAGGGTATCAAGACAAATTTATCATTGAAGATACAC
ACTGAAGACATCCCAACCTGTGACAGTACTTTATCTGTAACAGCAACAAACCTCGATACAGTGA
ATGATATAATCGAGAAGCTGCTACCAATGATAAGAATGCGTAACAGTGAAGATTACCAATTGTG
GTTCAGTCATAGCCGTGAGGAAGCTCCAAGAGCACTCCAAGGCTTCAAGTATCCACATATTATT
ATCATGACCAACTTTCAAAACACCTGCAATGGATCAAACTCAAGAATTTTAACAGCTTTTCCTG
CCTTACCTGGGATGTTTGTGCAAGACCTAAACTCAGATGCTCAGGGACATTTCTTCTTAAAGCC
CAGACAGCCAGCTATAAACCAGCAGCAAAGTGCAGAGGAAAGTCATTCTAAGATACAAAGACCA
GTTTTGACATCTTGCTTCCACAGGGGCTCTGTGCCCCACCAAGATCAAGTGTGTACTGTTCCTA
CAGCTAATAATGGAAAACTCTTCGGAACAGAACTGAGTTGCATCTATCATGAGGGAAAATGGCC
CAAATTAATTGTGGACATTCTGTCAGTCATAAGGAAGCAAGGCCCTTCAACAGAGGGCATATTC
GTGATTGCTCCTGAAGAGACATCATGCAAAGCCCTAAAAGAGAAATTAGAATCAGGGGAAGAAT
TAGACCTGAAAAAATTCTCGGTGCACGAAGTTGCTTGGATACTCAAGGAATTCCTTGGACACAT
TAAAGGCTGTGTGCTGACCTCGACATTATATGAACAGTGGCTTGATGTCCCCAACAAGGTCAAT
AACAAAGACAAATTAAGAGCAGTAAAGAGTCTTTTAGATAAACTTCCTCTTGAAAATGCTGCTC
TGCTGGGAAACCTTTTTAGGATACTCCATACAATTGCAAGCAGTTCTTCCATTAACAAAATGAA
ACCTTACAATATATCTACCGGAATAGCATCATCCATCTTATGGCTTCCTAGCTACCGCAAGGTG
ATAAATGATATTGACCAAAAGATTTCTCTCATAACTTTTATGATCGAGAACTCTCCTGAAATTT
TTGGAATTGACATGGTTTGGTATGAAACCTCACTTTTTTATCCACAAGAAGCAAAGGCCTCATG
TTCCCAGAATGCTACATCTAACACTGGGAACATAAAGGAAACAGAACCTGAACTCAGCAGCTGC
CCCAGTGGGAGGACACACACCCCTGGACATTATGCACGGCAGATAAGTCCAGCTGCTCCTCTTG
TGTGTGAGAGTATTATAGATGCACAGAAAGATGAAGGCAATGCCTATATAACCCAACACGAACC
TTCTCCTCCAGCAGTAACGCAAAATCGACAGGAGTCAATGAACCAAGTTCAACATACAACTTTC
TACAACAGAAACTTGGTTATGACTAAAGAAAGTGTCGACCCTTGTATTTCAATGTTCCCTTCTA
CCTCCCACTCAAAGAAGGCAGAAGAAATTATTAGAAGAAACAACTTCAGGTTTCTTTTTAACCA
TACTTATTTGGTACAAGTAGTTTCATTCACTATACTTATTTTATGTTGTATAATCCATTTTGTA
ATTAATTATAATAAATGGCATTAAATTTTGTTATATTG

hide sequence

RefSeq Acc Id:

XM_030252664 ⟹ XP_030108524

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	3	28,949,690 - 28,980,677 (+)	NCBI
GRCm38	3	28,895,541 - 28,926,528 (+)	NCBI

Sequence:

show sequence

ACTTGTTCTGTTAGGTGGAGACCTGGATCAGGAGTATCTTTTTTTTTTCTATATGGAAACCATT
GTGAAGAAAGACATGGGAGGAATCCATCGAACCTTGCTGTGCCAAGGCCCCGTGAAACTCAAAT
GTTTCCAGAAAACGAAAAAAAAAAGACATCTCTCCTTATTTAATGATGTCTTGGTTGTGTCGCG
TATCCTGAATAAAAGAGAGTTTAAGATAAAGTGCATCATCCCACTGCATCTCCTGTGGGTGGTG
GTGGATGATGTGGCCCAACGCAGAAAAAATGAAATCTGTACTTGCAAGACCCTTTACCTGCATT
GTCCCAATGGACACTTTTGGGCCACCTTTCGTTCACAAGAACAGAAAGATCAGTGGCACTATTT
TCTCCAAAGATCAATTCATGAAGCCAAGAAGGGTATCAAGACAAATTTATCATTGAAGATACAC
ACTGAAGACATCCCAACCTGTGACAGTACTTTATCTGTAACAGCAACAAACCTCGATACAGTGA
ATGATATAATCGAGAAGCTGCTACCAATGATAAGAATGCGTAACAGTGAAGATTACCAATTGTG
GTTCAGTCATAGCCGTGAGGAAGCTCCAAGAGCACTCCAAGGCTTCAAGTATCCACATATTATT
ATCATGACCAACTTTCAAAACACCTGCAATGGATCAAACTCAAGAATTTTAACAGCTTTTCCTG
CCTTACCTGGGATGTTTGTGCAAGACCTAAACTCAGATGCTCAGGGACATTTCTTCTTAAAGCC
CAGACAGCCAGCTATAAACCAGCAGCAAAGTGCAGAGGAAAGTCATTCTAAGATACAAAGACCA
GTTTTGACATCTTGCTTCCACAGGGGCTCTGTGCCCCACCAAGATCAAGTGTGTACTGTTCCTA
CAGCTAATAATGGAAAACTCTTCGGAACAGAACTGAGTTGCATCTATCATGAGGGAAAATGGCC
CAAATTAATTGTGGACATTCTGTCAGTCATAAGGAAGCAAGGCCCTTCAACAGAGGGCATATTC
GTGATTGCTCCTGAAGAGACATCATGCAAAGCCCTAAAAGAGAAATTAGAATCAGGGGAAGAAT
TAGACCTGAAAAAATTCTCGGTGCACGAAGTTGCTTGGATACTCAAGGAATTCCTTGGACACAT
TAAAGGCTGTGTGCTGACCTCGACATTATATGAACAGTGGCTTGATGTCCCCAACAAGGTCAAT
AACAAAGACAAATTAAGAGCAGTAAAGAGTCTTTTAGATAAACTTCCTCTTGAAAATGCTGCTC
TGCTGGGAAACCTTTTTAGGATACTCCATACAATTGCAAGCAGTTCTTCCATTAACAAAATGAA
ACCTTACAATATATCTACCGGAATAGCATCATCCATCTTATGGCTTCCTAGCTACCGCAAGGTG
ATAAATGATATTGACCAAAAGATGCACAGAAAGATGAAGGCAATGCCTATATAACCCAACACGA
ACCTTCTCCTCCAGCAGTAACGCAAAATCGAGAGTCAATGAACCAAGTTCAACATACAACTTTC
TACAACAGAAACTTGGTTATGACTAAAGAAAGTGTCGAC

hide sequence

RefSeq Acc Id:

XM_030252665 ⟹ XP_030108525

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	3	28,949,690 - 28,980,663 (+)	NCBI
GRCm38	3	28,895,541 - 28,926,514 (+)	NCBI

Sequence:

show sequence

ACTTGTTCTGTTAGGTGGAGACCTGGATCAGGAGTATCTTTTTTTTTTCTATATGGAAACCATT
GTGAAGAAAGACATGGGAGGAATCCATCGAACCTTGCTGTGCCAAGGCCCCGTGAAACTCAAAT
GTTTCCAGAAAACGAAAAAAAAAAGACATCTCTCCTTATTTAATGATGTCTTGGTTGTGTCGCG
TATCCTGAATAAAAGAGAGTTTAAGATAAAGTGCATCATCCCACTGCATCTCCTGTGGGTGGTG
GTGGATGATGTGGCCCAACGCAGAAAAAATGAAATCTGTACTTGCAAGACCCTTTACCTGCATT
GTCCCAATGGACACTTTTGGGCCACCTTTCGTTCACAAGAACAGAAAGATCAGTGGCACTATTT
TCTCCAAAGATCAATTCATGAAGCCAAGAAGGGTATCAAGACAAATTTATCATTGAAGATACAC
ACTGAAGACATCCCAACCTGTGACAGTACTTTATCTGTAACAGCAACAAACCTCGATACAGTGA
ATGATATAATCGAGAAGCTGCTACCAATGATAAGAATGCGTAACAGTGAAGATTACCAATTGTG
GTTCAGTCATAGCCGTGAGGAAGCTCCAAGAGCACTCCAAGGCTTCAAGTATCCACATATTATT
ATCATGACCAACTTTCAAAACACCTGCAATGGATCAAACTCAAGAATTTTAACAGCTTTTCCTG
CCTTACCTGGGATGTTTGTGCAAGACCTAAACTCAGATGCTCAGGGACATTTCTTCTTAAAGCC
CAGACAGCCAGCTATAAACCAGCAGCAAAGTGCAGAGGAAAGTCATTCTAAGATACAAAGACCA
GTTTTGACATCTTGCTTCCACAGGGGCTCTGTGCCCCACCAAGATCAAGTGTGTACTGTTCCTA
CAGCTAATAATGGAAAACTCTTCGGAACAGAACTGAGTTGCATCTATCATGAGGGAAAATGGCC
CAAATTAATTGTGGACATTCTGTCAGTCATAAGGAAGCAAGGCCCTTCAACAGAGGGCATATTC
GTGATTGCTCCTGAAGAGACATCATGCAAAGCCCTAAAAGAGAAATTAGAATCAGGGGAAGAAT
TAGACCTGAAAAAATTCTCGGTGCACGAAGTTGCTTGGATACTCAAGGAATTCCTTGGACACAT
TAAAGGCTGTGTGCTGACCTCGACATTATATGAACAGTGGCTTGATGTCCCCAACAAGGTCAAT
AACAAAGACAAATTAAGAGCAGTAAAGAGTCTTTTAGATAAACTTCCTCTTGAAAATGCTGCTC
TGCTGGGAAACCTTTTTAGGATACTCCATACAATTGCAAGCAGTTCTTCCATTAACAAAATGAA
ACCTTACAATATATCTACCGGAATAGCATCATCCATCTTATGGCTTCCTAGCTACCGCAAGGTG
ATAAATGATATTGACCAAAAGATGCACAGAAAGATGAAGGCAATGCCTATATAACCCAACACGA
ACCTTCTCCTCCAGCAGTAACGCAAAATCGACAGGAGTCAATGAACCAAGTTCAACATACAACT
TTCTACAACAGAAACTTGGTTATGACTA

hide sequence

RefSeq Acc Id:

XM_036163149 ⟹ XP_036019042

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	3	28,949,690 - 28,975,875 (+)	NCBI

Sequence:

show sequence

ACTTGTTCTGTTAGGTGGAGACCTGGATCAGGAGTATCTTTTTTTTTTCTATATGGAAACCATT
GTGAAGAAAGACATGGGAGGAATCCATCGAACCTTGCTGTGCCAAGGCCCCGTGAAACTCAAAT
GTTTCCAGAAAACGAAAAAAAAAAGACATCTCTCCTTATTTAATGATGTCTTGGTTGTGTCGCG
TATCCTGAATAAAAGAGAGTTTAAGATAAAGTGCATCATCCCACTGCATCTCCTGTGGGTGGTG
GTGGATGATGTGGCCCAACGCAGAAAAAATGAAATCTGTACTTGCAAGACCCTTTACCTGCATT
GTCCCAATGGACACTTTTGGGCCACCTTTCGTTCACAAGAACAGAAAGATCAGTGGCACTATTT
TCTCCAAAGATCAATTCATGAAGCCAAGAAGGGTATCAAGACAAATTTATCATTGAAGATACAC
ACTGAAGACATCCCAACCTGTGACAGTACTTTATCTGTAACAGCAACAAACCTCGATACAGTGA
ATGATATAATCGAGAAGCTGCTACCAATGATAAGAATGCGTAACAGTGAAGATTACCAATTGTG
GTTCAGTCATAGCCGTGAGGAAGCTCCAAGAGCACTCCAAGGCTTCAAGTATCCACATATTATT
ATCATGACCAACTTTCAAAACACCTGCAATGGATCAAACTCAAGAATTTTAACAGCTTTTCCTG
CCTTACCTGGGATGTTTGTGCAAGACCTAAACTCAGATGCTCAGGGACATTTCTTCTTAAAGCC
CAGACAGCCAGCTATAAACCAGCAGCAAAGTGCAGAGGAAAGTCATTCTAAGATACAAAGACCA
GTTTTGACATCTTGCTTCCACAGGGGCTCTGTGCCCCACCAAGATCAAGTGTGTACTGTTCCTA
CAGCTAATAATGGAAAACTCTTCGGAACAGAACTGAGTTGCATCTATCATGAGGGAAAATGGCC
CAAATTAATTGTGGACATTCTGTCAGTCATAAGGAAGCAAGGCCCTTCAACAGAGGGCATATTC
GTGATTGCTCCTGAAGAGACATCATGCAAAGCCCTAAAAGAGAAATTAGAATCAGGGGAAGAAT
TAGACCTGAAAAAATTCTCGGTGCACGAAGTTGCTTGGATACTCAAGGAATTCCTTGGACACAT
TAAAGGCTGTGTGCTGACCTCGACATTATATGAACAGTGGCTTGATGTCCCCAACAAGGTCAAT
AACAAAGACAAATTAAGAGCAGTAAAGAGTCTTTTAGATAAACTTCCTCTTGAAAATGCTGCTC
TGCTGGGAAACCTTTTTAGGATACTCCATACAATTGCAAGCAGTTCTTCCATTAACAAAATGAA
ACCTTACAATATATCTACCGGAATAGCATCATCCATCTTATGGCTTCCTAGCTACCGCAAGGTG
ATAAATGATATTGACCAAAAGATGCACAGAAAGATGAAGGCAATGCCTATATAACCCAACACGA
ACCTTCTCCTCCAGCAGTAACGCAAAATCGAGTACGTATATTTCCACCCATTGATTGCGTTGAC
AGTTTGCTGACTTCTCCTATATAT

hide sequence

Protein Sequences


Protein RefSeqs	NP_001028651	(Get FASTA)	NCBI Sequence Viewer
	XP_017175122	(Get FASTA)	NCBI Sequence Viewer
	XP_017175123	(Get FASTA)	NCBI Sequence Viewer
	XP_030108523	(Get FASTA)	NCBI Sequence Viewer
	XP_030108524	(Get FASTA)	NCBI Sequence Viewer
	XP_030108525	(Get FASTA)	NCBI Sequence Viewer
	XP_036019042	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	BAE21461	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSMUSP00000096773
	ENSMUSP00000096773.2

RefSeq Acc Id:

NP_001028651 ⟸ NM_001033479

- UniProtKB:

Q3V0P3 (UniProtKB/TrEMBL)

- Sequence:

show sequence

METIVKKDMGGIHRTLLCQGPVKLKCFQKTKKKRHLSLFNDVLVVSRILNKREFKIKCIIPLHL
LWVVVDDVAQRRKNEICTCKTLYLHCPNGHFWATFRSQEQKDQWHYFLQRSIHEAKKGIKTNLS
LKIHTEDIPTCDSTLSVTATNLDTVNDIIEKLLPMIRMRNSEDYQLWFSHSREEAPRALQGFKY
PHIIIMTNFQNTCNGSNSRILTAFPALPGMFVQDLNSDAQGHFFLKPRQPAINQQQSAEESHSK
IQRPVLTSCFHRGSVPHQDQVCTVPTANNGKLFGTELSCIYHEGKWPKLIVDILSVIRKQGPST
EGIFVIAPEETSCKALKEKLESGEELDLKKFSVHEVAWILKEFLGHIKGCVLTSTLYEQWLDVP
NKVNNKDKLRAVKSLLDKLPLENAALLGNLFRILHTIASSSSINKMKPYNISTGIASSILWLPS
YRKVINDIDQKISLITFMIENSPEIFGIDMVWYETSLFYPQEAKASCSQNATSNTGNIKETEPE
LSSCPSGRTHTPGHYARQISPAAPLVCESIIDAQKDEGNAYITQHEPSPPAVTQNRESMNQVQH
TTFYNRNLVMTKESVDPCISMFPSTSHSKKAEEIIRRNNFRFLFNHTYLVQVVSFTILILCCII
HFVINYNKWH

hide sequence

RefSeq Acc Id:	XP_017175122 ⟸ XM_017319633
- Peptide Label:	isoform X2
- UniProtKB:	Q3V0P3 (UniProtKB/TrEMBL)
- Sequence:	show sequence METIVKKDMGGIHRTLLCQGPVKLKCFQKTKKKRHLSLFNDVLVVSRILNKREFKIKCIIPLHL LWVVVDDVAQRRKNEICTCKTLYLHCPNGHFWATFRSQEQKDQWHYFLQRSIHEAKKGIKTNLS LKIHTEDIPTCDSTLSVTATNLDTVNDIIEKLLPMIRMRNSEDYQLWFSHSREEAPRALQGFKY PHIIIMTNFQNTCNGSNSRILTAFPALPGMFVQDLNSDAQGHFFLKPRQPAINQQQSAEESHSK IQRPVLTSCFHRGSVPHQDQVCTVPTANNGKLFGTELSCIYHEGKWPKLIVDILSVIRKQGPST EGIFVIAPEETSCKALKEKLESGEELDLKKFSVHEVAWILKEFLGHIKGCVLTSTLYEQWLDVP NKVNNKDKLRAVKSLLDKLPLENAALLGNLFRILHTIASSSSINKMKPYNISTGIASSILWLPS YRKVINDIDQKISLITFMIENSPEIFGIDMVWYETSLFYPQEAKASCSQNATSNTGNIKETEPE LSSCPSGRTHTPGHYARQISPAAPLVCESIIDAQKDEGNAYITQHEPSPPAVTQNRESMNQVQH TTFYNRNLVMTKESVDPCISMFPSTSHSKKAEEIIRRNNFRFLFNHTYLVQVVSFTILILCCII HFVINYNKWH hide sequence

RefSeq Acc Id:

XP_017175123 ⟸ XM_017319634

- Peptide Label:

isoform X4

- Sequence:

show sequence

MTNFQNTCNGSNSRILTAFPALPGMFVQDLNSDAQGHFFLKPRQPAINQQQSAEESHSKIQRPV
LTSCFHRGSVPHQDQVCTVPTANNGKLFGTELSCIYHEGKWPKLIVDILSVIRKQGPSTEGIFV
IAPEETSCKALKEKLESGEELDLKKFSVHEVAWILKEFLGHIKGCVLTSTLYEQWLDVPNKVNN
KDKLRAVKSLLDKLPLENAALLGNLFRILHTIASSSSINKMKPYNISTGIASSILWLPSYRKVI
NDIDQKISLITFMIENSPEIFGIDMVWYETSLFYPQEAKASCSQNATSNTGNIKETEPELSSCP
SGRTHTPGHYARQISPAAPLVCESIIDAQKDEGNAYITQHEPSPPAVTQNRQESMNQVQHTTFY
NRNLVMTKESVDPCISMFPSTSHSKKAEEIIRRNNFRFLFNHTYLVQVVSFTILILCCIIHFVI
NYNKWH

hide sequence

RefSeq Acc Id:	XP_030108523 ⟸ XM_030252663
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_030108524 ⟸ XM_030252664
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_030108525 ⟸ XM_030252665
- Peptide Label:	isoform X3

Ensembl Acc Id:

ENSMUSP00000096773 ⟸ ENSMUST00000099170

RefSeq Acc Id:	XP_036019042 ⟸ XM_036163149
- Peptide Label:	isoform X3

Protein Domains

Ras-associating Rho-GAP

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q3V0P3-F1-model_v2	AlphaFold	Q3V0P3	1-650	view protein structure

Promoters

RGD ID:

6880388

Promoter ID:

EPDNEW_M3645

Type:

initiation region

Name:

Gm1527_1

Description:

Mus musculus predicted gene 1527 , mRNA.

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	3	28,892,619 - 28,892,679	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	MGI:2686373	AgrOrtholog
Ensembl Genes	ENSMUSG00000074655	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSMUST00000099170	ENTREZGENE
	ENSMUST00000099170.2	UniProtKB/TrEMBL
Gene3D-CATH	1.10.555.10	UniProtKB/TrEMBL
	2.30.29.30	UniProtKB/TrEMBL
InterPro	ARHGAP20_PH	UniProtKB/TrEMBL
	PH_type	UniProtKB/TrEMBL
	Pleckstrin_homology	UniProtKB/TrEMBL
	Ras-assoc	UniProtKB/TrEMBL
	Rho_GTPase_activation_prot	UniProtKB/TrEMBL
	RhoGAP_dom	UniProtKB/TrEMBL
KEGG Report	mmu:385263	UniProtKB/TrEMBL
MGD	MGI:2686373	ENTREZGENE
NCBI Gene	385263	ENTREZGENE
PANTHER	GENE 1527-RELATED	UniProtKB/TrEMBL
	T-CELL ACTIVATION RHO GTPASE ACTIVATING PROTEIN-RELATED	UniProtKB/TrEMBL
Pfam	PF00788	UniProtKB/TrEMBL
	RHG20_PH	UniProtKB/TrEMBL
	RhoGAP	UniProtKB/TrEMBL
PhenoGen	Gm1527	PhenoGen
PROSITE	PS50200	UniProtKB/TrEMBL
	RHOGAP	UniProtKB/TrEMBL
SMART	RhoGAP	UniProtKB/TrEMBL
	SM00233	UniProtKB/TrEMBL
Superfamily-SCOP	PH domain-like	UniProtKB/TrEMBL
	Rho_GAP	UniProtKB/TrEMBL
UniProt	Q3V0P3	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-03-02	Gm1527	predicted gene 1527	Gm1136	gene model 1136, (NCBI)	Data merged from RGD:1614611	737654	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Send us a Message