Cbx6 (chromobox 6) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Cbx6 (chromobox 6) Mus musculus
Analyze
Symbol: Cbx6
Name: chromobox 6
RGD ID: 1620362
MGI Page MGI
Description: Enables single-stranded RNA binding activity. Predicted to be involved in negative regulation of transcription by RNA polymerase II. Located in heterochromatin and nucleus. Is expressed in cerebral cortex subventricular zone; cerebral cortex ventricular layer; cortical plate; and intestine smooth muscle circular layer. Orthologous to human CBX6 (chromobox 6).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: chromobox homolog 6; chromobox protein homolog 6
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391579,708,099 - 79,718,534 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1579,708,097 - 79,718,889 (-)EnsemblGRCm39 Ensembl
GRCm381579,823,898 - 79,834,333 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1579,823,896 - 79,834,688 (-)EnsemblGRCm38mm10GRCm38
MGSCv371579,654,328 - 79,664,763 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361579,651,153 - 79,661,588 (-)NCBIMGSCv36mm8
Celera1581,943,110 - 81,953,546 (-)NCBICelera
Cytogenetic Map15E1NCBI
cM Map1537.85NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,1-dichloroethene  (EXP)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2-hydroxypropanoic acid  (ISO)
4,4'-sulfonyldiphenol  (EXP,ISO)
4-hydroxyphenyl retinamide  (EXP)
6-propyl-2-thiouracil  (ISO)
acrolein  (ISO)
acrylamide  (ISO)
alpha-pinene  (ISO)
amphetamine  (ISO)
atrazine  (ISO)
benzo[a]pyrene  (EXP)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
butanal  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
caffeine  (ISO)
chlorpyrifos  (EXP)
choline  (EXP)
ciguatoxin CTX1B  (EXP)
cisplatin  (ISO)
clofibric acid  (ISO)
cobalt dichloride  (ISO)
copper(II) chloride  (ISO)
cyclosporin A  (ISO)
dicrotophos  (ISO)
dieldrin  (ISO)
dioxygen  (EXP)
endosulfan  (ISO)
ethanol  (EXP)
folic acid  (EXP)
FR900359  (ISO)
genistein  (ISO)
gentamycin  (ISO)
glyphosate  (ISO)
hydroquinone O-beta-D-glucopyranoside  (ISO)
inulin  (EXP)
iron dichloride  (ISO)
L-methionine  (EXP)
lead diacetate  (ISO)
methimazole  (ISO)
methyl methanesulfonate  (ISO)
methylmercury chloride  (ISO)
N-nitrosodiethylamine  (ISO)
nickel dichloride  (ISO)
nitrofen  (ISO)
ozone  (ISO)
paracetamol  (EXP,ISO)
perfluorooctane-1-sulfonic acid  (EXP)
perfluorooctanoic acid  (EXP)
poly(I:C)  (ISO)
quercetin  (ISO)
rac-lactic acid  (ISO)
resveratrol  (ISO)
selenomethionine  (ISO)
silicon dioxide  (EXP,ISO)
sodium arsenite  (ISO)
sulforaphane  (ISO)
thioacetamide  (ISO)
thiram  (ISO)
titanium dioxide  (EXP)
trichloroethene  (EXP)
trichostatin A  (ISO)
triptonide  (EXP)
tunicamycin  (ISO)
urethane  (ISO)
valproic acid  (ISO)
vitamin E  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
chromatin  (IBA)
heterochromatin  (IDA)
nuclear body  (IEA,ISO)
nucleoplasm  (ISO)
nucleus  (IDA,ISO)
PcG protein complex  (ISO,ISS)
PRC1 complex  (IBA)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. PRC1 complex diversity: where is it taking us? Gil J and O'Loghlen A, Trends Cell Biol. 2014 Jul 22. pii: S0962-8924(14)00102-0. doi: 10.1016/j.tcb.2014.06.005.
2. Altered expression of polycomb group genes in glioblastoma multiforme. Li G, etal., PLoS One. 2013 Nov 15;8(11):e80970. doi: 10.1371/journal.pone.0080970. eCollection 2013.
3. Mouse MP Annotation Import Pipeline RGD automated import pipeline
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
5. Occupying chromatin: Polycomb mechanisms for getting to genomic targets, stopping transcriptional traffic, and staying put. Simon JA and Kingston RE, Mol Cell. 2013 Mar 7;49(5):808-24. doi: 10.1016/j.molcel.2013.02.013.
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:15593341   PMID:15782199   PMID:16141072   PMID:16141073   PMID:16537902  
PMID:17296600   PMID:18927235   PMID:21267068   PMID:21677750   PMID:21873635   PMID:24721909   PMID:26930384   PMID:28839133   PMID:29089522   PMID:30186101   PMID:30973865   PMID:32325033  
PMID:34321999   PMID:37158107   PMID:38355793  


Genomics

Comparative Map Data
Cbx6
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391579,708,099 - 79,718,534 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1579,708,097 - 79,718,889 (-)EnsemblGRCm39 Ensembl
GRCm381579,823,898 - 79,834,333 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1579,823,896 - 79,834,688 (-)EnsemblGRCm38mm10GRCm38
MGSCv371579,654,328 - 79,664,763 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361579,651,153 - 79,661,588 (-)NCBIMGSCv36mm8
Celera1581,943,110 - 81,953,546 (-)NCBICelera
Cytogenetic Map15E1NCBI
cM Map1537.85NCBI
CBX6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382238,861,422 - 38,872,216 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2238,861,422 - 38,872,249 (-)EnsemblGRCh38hg38GRCh38
GRCh372239,257,427 - 39,268,221 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362237,590,189 - 37,598,204 (-)NCBINCBI36Build 36hg18NCBI36
Build 342237,584,749 - 37,592,758NCBI
Celera2223,066,901 - 23,074,916 (-)NCBICelera
Cytogenetic Map22q13.1NCBI
HuRef2222,225,829 - 22,233,844 (-)NCBIHuRef
CHM1_12239,219,153 - 39,227,168 (-)NCBICHM1_1
T2T-CHM13v2.02239,331,798 - 39,342,593 (-)NCBIT2T-CHM13v2.0
Cbx6
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87113,253,364 - 113,263,413 (-)NCBIGRCr8
mRatBN7.27111,372,979 - 111,383,026 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7111,372,980 - 111,383,091 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx7113,120,974 - 113,130,993 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07115,344,512 - 115,354,531 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07115,313,857 - 115,323,876 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.07121,047,996 - 121,058,109 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7121,050,302 - 121,058,029 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07121,038,955 - 121,049,097 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47118,062,267 - 118,070,004 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.17118,096,504 - 118,104,234 (-)NCBI
Celera7107,705,925 - 107,713,664 (-)NCBICelera
Cytogenetic Map7q34NCBI
Cbx6
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541324,955,721 - 24,966,973 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541324,955,721 - 24,966,015 (-)NCBIChiLan1.0ChiLan1.0
CBX6
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22348,714,786 - 48,726,440 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12251,406,135 - 51,416,940 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02219,774,136 - 19,784,937 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12237,591,216 - 37,602,377 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2237,595,940 - 37,601,679 (-)Ensemblpanpan1.1panPan2
CBX6
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11025,967,305 - 25,973,489 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1025,967,300 - 25,988,497 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1025,917,598 - 25,928,682 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01026,752,750 - 26,763,369 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1026,752,754 - 26,791,762 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11026,474,793 - 26,485,867 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01026,785,642 - 26,796,695 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01026,961,989 - 26,973,063 (+)NCBIUU_Cfam_GSD_1.0
Cbx6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049459,511,714 - 9,521,968 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364922,521,553 - 2,532,516 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364922,522,126 - 2,532,382 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CBX6
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl59,180,684 - 9,188,620 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.159,180,559 - 9,191,414 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
CBX6
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11921,525,609 - 21,536,406 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1921,525,596 - 21,536,352 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666045104,221,484 - 104,232,319 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cbx6
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247529,291,892 - 9,302,688 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247529,291,955 - 9,302,451 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Cbx6
261 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:3933
Count of miRNA genes:852
Interacting mature miRNAs:1155
Transcripts:ENSMUST00000109623, ENSMUST00000109625, ENSMUST00000109627, ENSMUST00000127721, ENSMUST00000129614, ENSMUST00000141345, ENSMUST00000148358
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300627Sluc26_msusceptibility to lung cancer 26 (mouse)Not determined1570345653104073951Mouse
38501067Tip3_mtuberculosis immunophenotype 3, IFN-g level (mouse)155356339689584203Mouse
27226777Tibl8_mtibia length 8, 5 week (mouse)15692948184584201Mouse
15092079Igly6_mIgG glycosylation 6, GP6 (mouse)157410054082674156Mouse
1558786Msq1_mMAV-1 susceptibility QTL 1 (mouse)Not determined156338964681086436Mouse
13504731Cath5_mcarotid atherosclerosis 5 (mouse)155478912988789129Mouse
15092080Igly7_mIgG glycosylation 7, GP10 (mouse)157779491982674156Mouse
12791003Aath8_maortic arch atherosclerosis 8 (mouse)1573430144104073951Mouse
1301006Hfib1_mhepatic fibrogenesis 1 (mouse)Not determined154730633481306479Mouse
27095936Ulnl4_mulna length 4, 5 week (mouse)155676339687684201Mouse
10755515Amzn3_manatomical modifier of Zfp423 3 (mouse)154638964680389845Mouse
1301171Brm2_mbrachyury modifier 2 (mouse)Not determined156552537699525499Mouse
10402490Dipa5_mdrug induced psychomotor activation 5 (mouse)Not determined1579163411104073951Mouse
1302197Bhr2_mbronchial hyperresponsiveness 2 (mouse)Not determined1564306334103425899Mouse
1301429Pcir3_mperiosteal circumference 3 (mouse)Not determined154846536282465496Mouse
1357756Alaa4_malopecia areata 4 (mouse)Not determined154638964680389845Mouse
26884402Cvht9_mcranial vault height 9, 16 week (mouse)154216339695497881Mouse
1302074Bmd4_mbone mineral density 4 (mouse)Not determined1556186708103425899Mouse
26884399Humsd1_mhumerus midshaft diameter 1, 5 week (mouse)1548363396101708435Mouse
26884397Humsd5_mhumerus midshaft diameter 5, 10 week (mouse)154836339698397881Mouse
1300648Dbsty4_mdiabesity 4 (mouse)Not determined1570349271104073951Mouse
10412067Pain2_mpain 2 (mouse)Not determined155164533985645626Mouse
26884442Sklq6_mskull length QTL 6, 5 week (mouse)156129481100797881Mouse
1357526Hyplip2_mhyperlipidemia 2 (mouse)Not determined1512402203102896555Mouse
4142198Hbtq_mhabituation QTL (mouse)Not determined155116070885160833Mouse
1357407Pfat4_mpredicted fat percentage 4 (mouse)8.6Body fat amountpredicted fat percentage155711700591117153Mouse
14928306Manh79_mmandible shape 79 (mouse)1578847557104073951Mouse
1357894Epfpq3_mepididymal fat percentage QTL 3 (mouse)Not determined1578601103102901704Mouse
1302080Szs13_mseizure susceptibility 13 (mouse)Not determined155168583285694449Mouse
1300800Ses3_msalmonella enteritidis susceptibility 3 (mouse)Not determined155711700591117153Mouse
4142060W3q6_mweight 3 weeks QTL 6 (mouse)Not determined78601103102901704Mouse
26884425Cvht2_mcranial vault height 2, 5 week (mouse)1528800146102008435Mouse
10045637Heal27_mwound healing/regeneration 29 (mouse)Not determined155141836185418511Mouse
1558985Eae32_mexperimental allergic encephalomyelitis susceptibility 32 (mouse)Not determined1532578416103425899Mouse
4141921Pstc3_mperiosteal circumference 3 (mouse)Not determined1567270698101270847Mouse
1301708Cocrb14_mcocaine related behavior 14 (mouse)Not determined155180651585806651Mouse
12880411V125Dq11_mvitamin D active form serum level QTL 11 (mouse)1578897881104073951Mouse
1300851Heal4_mwound healing/regeneration 4 (mouse)Not determined1577527592104073951Mouse
12880420V25Dq8_mvitamin D inactive form serum level QTL 8 (mouse)156158420095584200Mouse
1302002Cocia2_mcocaine induced activation 2 (mouse)Not determined157237245979899178Mouse
14747011Mancz13_mmandible centroid size 13 (mouse)1572382669104073951Mouse
1300726Pitm4_mprion incubation time 4 (mouse)Not determined1570349271104073951Mouse
1301119Drb7_mdopamine receptor binding 7 (mouse)Not determined156533657899341028Mouse
4141135Cia35_mcollagen induced arthritis 35 (mouse)Not determined156481182698811946Mouse
27226734Tibmd5_mtibia midshaft diameter 5, 10 week (mouse)15612948186684201Mouse
1301601Faq9_mfluctuating asymmetry QTL 9 (mouse)Not determined156316390397163995Mouse
1301472Pain1_mpain 1 (mouse)Not determined157532084690813185Mouse
27226729Tibmd2_mtibia midshaft diameter 2, 5 week (mouse)153800024486684201Mouse
1301860Gct3_mgranulosa cell tumorigenesis 3 (mouse)Not determined154740959681409691Mouse

Markers in Region
AI785356  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381579,826,437 - 79,826,572UniSTSGRCm38
MGSCv371579,656,867 - 79,657,002UniSTSGRCm37
Celera1581,945,641 - 81,945,776UniSTS
Cytogenetic Map15E1UniSTS
Whitehead/MRC_RH15676.86UniSTS
AI452369  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381579,824,134 - 79,824,227UniSTSGRCm38
MGSCv371579,654,564 - 79,654,657UniSTSGRCm37
Celera1581,943,346 - 81,943,439UniSTS
Cytogenetic Map15E1UniSTS
Whitehead/MRC_RH15676.86UniSTS
RH125232  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381579,824,036 - 79,824,168UniSTSGRCm38
MGSCv371579,654,466 - 79,654,598UniSTSGRCm37
Celera1581,943,248 - 81,943,380UniSTS
Cytogenetic Map15E1UniSTS
UniSTS:237350  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381579,826,751 - 79,826,976UniSTSGRCm38
MGSCv371579,657,181 - 79,657,406UniSTSGRCm37
Celera1581,945,955 - 81,946,180UniSTS
Cytogenetic Map15E1UniSTS
D15Bwg0580e  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381579,823,968 - 79,824,161UniSTSGRCm38
MGSCv371579,654,398 - 79,654,591UniSTSGRCm37
Celera1581,943,180 - 81,943,373UniSTS
Cytogenetic Map15E1UniSTS
Cytogenetic Map15E2UniSTS
cM Map1546.0UniSTS


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_028763 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC113595 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK004679 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK017510 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK035250 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK090253 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK146048 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK146103 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK147702 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK162544 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK176929 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK177975 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK179053 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK179810 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK181770 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK183539 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK185679 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK186353 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK187077 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK188360 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK191513 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK192024 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK194980 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK197952 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK199566 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK200811 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK202758 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK202886 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK204423 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK206114 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK207037 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK207118 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK208759 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK210052 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK212185 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK213135 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK214022 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK214134 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK216632 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK217946 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK218930 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC011199 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC019942 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC048240 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY237361 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466550 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000109623   ⟹   ENSMUSP00000105252
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1579,712,038 - 79,718,427 (-)Ensembl
GRCm38.p6 Ensembl1579,827,837 - 79,834,226 (-)Ensembl
Ensembl Acc Id: ENSMUST00000109625   ⟹   ENSMUSP00000105253
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1579,710,342 - 79,718,438 (-)Ensembl
GRCm38.p6 Ensembl1579,826,141 - 79,834,237 (-)Ensembl
Ensembl Acc Id: ENSMUST00000109627   ⟹   ENSMUSP00000105255
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1579,708,097 - 79,718,889 (-)Ensembl
GRCm38.p6 Ensembl1579,823,896 - 79,834,688 (-)Ensembl
Ensembl Acc Id: ENSMUST00000127721
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1579,716,773 - 79,718,526 (-)Ensembl
GRCm38.p6 Ensembl1579,832,572 - 79,834,325 (-)Ensembl
Ensembl Acc Id: ENSMUST00000129614
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1579,717,446 - 79,718,475 (-)Ensembl
GRCm38.p6 Ensembl1579,833,245 - 79,834,274 (-)Ensembl
Ensembl Acc Id: ENSMUST00000141345
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1579,712,837 - 79,717,999 (-)Ensembl
GRCm38.p6 Ensembl1579,828,636 - 79,833,798 (-)Ensembl
Ensembl Acc Id: ENSMUST00000148358   ⟹   ENSMUSP00000119037
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1579,712,978 - 79,718,481 (-)Ensembl
GRCm38.p6 Ensembl1579,828,777 - 79,834,280 (-)Ensembl
Ensembl Acc Id: ENSMUST00000230681
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1579,710,301 - 79,718,150 (-)Ensembl
GRCm38.p6 Ensembl1579,826,100 - 79,833,949 (-)Ensembl
RefSeq Acc Id: NM_028763   ⟹   NP_083039
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391579,708,099 - 79,718,534 (-)NCBI
GRCm381579,823,898 - 79,834,333 (-)ENTREZGENE
MGSCv371579,654,328 - 79,664,763 (-)RGD
Celera1581,943,110 - 81,953,546 (-)RGD
cM Map15 ENTREZGENE
Sequence:
RefSeq Acc Id: NP_083039   ⟸   NM_028763
- UniProtKB: Q8BZH5 (UniProtKB/Swiss-Prot),   Q9DBY5 (UniProtKB/Swiss-Prot),   Q3UK98 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSMUSP00000119037   ⟸   ENSMUST00000148358
Ensembl Acc Id: ENSMUSP00000105252   ⟸   ENSMUST00000109623
Ensembl Acc Id: ENSMUSP00000105255   ⟸   ENSMUST00000109627
Ensembl Acc Id: ENSMUSP00000105253   ⟸   ENSMUST00000109625
Protein Domains
Chromo

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9DBY5-F1-model_v2 AlphaFold Q9DBY5 1-414 view protein structure

Promoters
RGD ID:6825893
Promoter ID:MM_KWN:19086
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   Kidney,   Lung,   MEF_B4
Transcripts:ENSMUST00000089297,   ENSMUST00000109623,   ENSMUST00000109627,   NM_001013360,   NM_001013362,   OTTMUST00000042385,   OTTMUST00000042386,   OTTMUST00000042387,   OTTMUST00000042388,   OTTMUST00000078353,   UC007WUP.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361579,664,576 - 79,665,076 (-)MPROMDB
RGD ID:8684376
Promoter ID:EPDNEW_M20219
Type:initiation region
Name:Cbx6_1
Description:Mus musculus chromobox 6 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381579,834,237 - 79,834,297EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:3512628 AgrOrtholog
Ensembl Genes ENSMUSG00000089715 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000109623.8 UniProtKB/TrEMBL
  ENSMUST00000109625.8 UniProtKB/TrEMBL
  ENSMUST00000109627 ENTREZGENE
  ENSMUST00000109627.8 UniProtKB/Swiss-Prot
  ENSMUST00000148358.2 UniProtKB/TrEMBL
Gene3D-CATH 2.40.50.40 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro CBX7_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Chromo-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Chromo/chromo_shadow_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Chromo_dom_subgr UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Chromo_domain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Chromodomain_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PcG_PRC1-like_component UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:494448 UniProtKB/Swiss-Prot
MGD MGI:3512628 ENTREZGENE
NCBI Gene 494448 ENTREZGENE
PANTHER CHROMOBOX PROTEIN HOMOLOG 6 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  POLYCOMB GROUP PROTEIN PC UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam CBX7_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Chromo UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Cbx6 PhenoGen
PRINTS CHROMODOMAIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE CHROMO_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CHROMO_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART CHROMO UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF54160 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt CBX6_MOUSE UniProtKB/Swiss-Prot
  D3Z329_MOUSE UniProtKB/TrEMBL
  D3Z5F6_MOUSE UniProtKB/TrEMBL
  Q3UK98 ENTREZGENE, UniProtKB/TrEMBL
  Q8BZH5 ENTREZGENE
  Q9CYM8_MOUSE UniProtKB/TrEMBL
  Q9DBY5 ENTREZGENE
UniProt Secondary Q8BZH5 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2012-07-10 Cbx6  chromobox 6  Cbx6  chromobox homolog 6  Symbol and/or name change 5135510 APPROVED