Or10ad1c (olfactory receptor family 10 subfamily AD member 1C) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Or10ad1c (olfactory receptor family 10 subfamily AD member 1C) Mus musculus
Analyze
No known orthologs.
Symbol: Or10ad1c (Ensembl: Gm44579)
Name: olfactory receptor family 10 subfamily AD member 1C (Ensembl:predicted gene 44579)
RGD ID: 1620351
MGI Page MGI
Description: Predicted to enable olfactory receptor activity. Predicted to act upstream of or within G protein-coupled receptor signaling pathway and sensory perception of smell. Predicted to be located in membrane. Is expressed in lung; mandible; olfactory epithelium; and oral epithelium. Orthologous to human OR10AD1 (olfactory receptor family 10 subfamily AD member 1).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: C85333; expressed sequence C85333; GA_x5J8B7W76D0-7609197-7608973; GA_x6K02T2NBG7-5568919-5569857; MOR286; MOR286-3P; olfactory receptor 288; olfactory receptor GA_x5J8B7W76D0-7609197-7608973; olfactory receptor MOR286-3P; Olfr288
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391598,083,892 - 98,093,423 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1598,083,898 - 98,118,858 (-)EnsemblGRCm39 Ensembl
GRCm39 Ensembl1598,083,894 - 98,093,423 (-)EnsemblGRCm39 Ensembl
GRCm381598,186,011 - 98,195,542 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1598,186,017 - 98,220,977 (-)EnsemblGRCm38mm10GRCm38
GRCm38.p6 Ensembl1598,186,013 - 98,195,542 (-)EnsemblGRCm38mm10GRCm38
MGSCv371598,016,444 - 98,025,973 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361598,014,051 - 98,023,561 (-)NCBIMGSCv36mm8
Celera15100,315,445 - 100,324,980 (-)NCBICelera
Cytogenetic Map15F1NCBI
cM Map1554.19NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
membrane  (ISA)

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:10725249   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11217851   PMID:11544199   PMID:11802173   PMID:11875048   PMID:12466851   PMID:14611657   PMID:16141072  
PMID:16141073   PMID:21267068   PMID:21873635   PMID:30643144   PMID:32295537  


Genomics

Variants

.
Variants in Or10ad1c
211 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:841
Count of miRNA genes:378
Interacting mature miRNAs:420
Transcripts:ENSMUST00000142443, ENSMUST00000154964, ENSMUST00000165379
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
26884442Sklq6_mskull length QTL 6, 5 week (mouse)156129481100797881Mouse
1300627Sluc26_msusceptibility to lung cancer 26 (mouse)Not determined1570345653104073951Mouse
1357526Hyplip2_mhyperlipidemia 2 (mouse)Not determined1512402203102896555Mouse
11528547Sluc34_msusceptibility to lung cancer 34 (mouse)1597884933102896555Mouse
1301918Skull22_mskull morphology 22 (mouse)Not determined1585901546104073951Mouse
14928306Manh79_mmandible shape 79 (mouse)1578847557104073951Mouse
1357894Epfpq3_mepididymal fat percentage QTL 3 (mouse)Not determined1578601103102901704Mouse
26884425Cvht2_mcranial vault height 2, 5 week (mouse)1528800146102008435Mouse
4142060W3q6_mweight 3 weeks QTL 6 (mouse)Not determined78601103102901704Mouse
12791003Aath8_maortic arch atherosclerosis 8 (mouse)1573430144104073951Mouse
11530038Sluc34b_msusceptibility to lung cancer 34b (mouse)1585896437104073951Mouse
11530037Sluc34a_msusceptibility to lung cancer 34a (mouse)1585896437104073951Mouse
1558985Eae32_mexperimental allergic encephalomyelitis susceptibility 32 (mouse)Not determined1532578416103425899Mouse
4141921Pstc3_mperiosteal circumference 3 (mouse)Not determined1567270698101270847Mouse
12880411V125Dq11_mvitamin D active form serum level QTL 11 (mouse)1578897881104073951Mouse
1301171Brm2_mbrachyury modifier 2 (mouse)Not determined156552537699525499Mouse
1300851Heal4_mwound healing/regeneration 4 (mouse)Not determined1577527592104073951Mouse
14747011Mancz13_mmandible centroid size 13 (mouse)1572382669104073951Mouse
10402490Dipa5_mdrug induced psychomotor activation 5 (mouse)Not determined1579163411104073951Mouse
1300726Pitm4_mprion incubation time 4 (mouse)Not determined1570349271104073951Mouse
1302197Bhr2_mbronchial hyperresponsiveness 2 (mouse)Not determined1564306334103425899Mouse
1302074Bmd4_mbone mineral density 4 (mouse)Not determined1556186708103425899Mouse
1301119Drb7_mdopamine receptor binding 7 (mouse)Not determined156533657899341028Mouse
4141135Cia35_mcollagen induced arthritis 35 (mouse)Not determined156481182698811946Mouse
4141902Cia37_mcollagen induced arthritis 37 (mouse)Not determined1580884933104073951Mouse
14700689Carg5_mCandida albicans resistance gene 5 (mouse)1597697881103008427Mouse
4141581Dshv1_mdorsal hippocampal volume 1 (mouse)Not determined92788640103425899Mouse
26884399Humsd1_mhumerus midshaft diameter 1, 5 week (mouse)1548363396101708435Mouse
4141897Imrfq2_mimmune response to Factor IX QTL 2 (mouse)Not determined79908940104073951Mouse
26884397Humsd5_mhumerus midshaft diameter 5, 10 week (mouse)154836339698397881Mouse
1301284Cosz3_mcocaine seizure 3 (mouse)Not determined1580313634104073951Mouse
4141511Gdcr1_mglycerolphosphate dehydrogenase regulator 1 (mouse)Not determined82615474104073951Mouse
1357614Bmca_mbile mucin accumulation (mouse)Not determined1585896437104073951Mouse
1300648Dbsty4_mdiabesity 4 (mouse)Not determined1570349271104073951Mouse
1300974Pgia9_mproteoglycan induced arthritis 9 (mouse)Not determined1580884933104073951Mouse

Markers in Region
RH127168  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381598,186,028 - 98,186,276UniSTSGRCm38
MGSCv371598,016,459 - 98,016,707UniSTSGRCm37
Celera15100,315,460 - 100,315,708UniSTS
Cytogenetic Map15F1UniSTS
Whitehead/MRC_RH15871.28UniSTS


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSMUST00000142443   ⟹   ENSMUSP00000153744
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1598,083,898 - 98,118,858 (-)Ensembl
GRCm38.p6 Ensembl1598,186,017 - 98,220,977 (-)Ensembl
Ensembl Acc Id: ENSMUST00000154964
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1598,086,175 - 98,093,326 (-)Ensembl
GRCm38.p6 Ensembl1598,188,294 - 98,195,445 (-)Ensembl
Ensembl Acc Id: ENSMUST00000165379   ⟹   ENSMUSP00000132237
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1598,083,894 - 98,093,423 (-)Ensembl
GRCm38.p6 Ensembl1598,186,013 - 98,195,542 (-)Ensembl
RefSeq Acc Id: NM_001011733   ⟹   NP_001011733
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391598,083,894 - 98,093,423 (-)NCBI
GRCm381598,186,013 - 98,195,542 (-)NCBI
MGSCv371598,016,444 - 98,025,973 (-)RGD
Celera15100,315,445 - 100,324,980 (-)RGD
cM Map15 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_017316704   ⟹   XP_017172193
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391598,083,892 - 98,087,163 (-)NCBI
GRCm381598,186,011 - 98,189,283 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001011733 (Get FASTA)   NCBI Sequence Viewer  
  XP_017172193 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAM26991 (Get FASTA)   NCBI Sequence Viewer  
  AAP70834 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000132237
  ENSMUSP00000132237.2
  ENSMUSP00000153744.2
RefSeq Acc Id: NP_001011733   ⟸   NM_001011733
- UniProtKB: E9Q1P2 (UniProtKB/TrEMBL),   Q7TS14 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017172193   ⟸   XM_017316704
- Peptide Label: isoform X1
- UniProtKB: E9Q1P2 (UniProtKB/TrEMBL),   Q7TS14 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSMUSP00000132237   ⟸   ENSMUST00000165379
Ensembl Acc Id: ENSMUSP00000153744   ⟸   ENSMUST00000142443
Protein Domains
G-protein coupled receptors family 1 profile

Promoters
RGD ID:8684896
Promoter ID:EPDNEW_M20479
Type:single initiation site
Name:Olfr288_1
Description:Mus musculus olfactory receptor 288 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381598,195,451 - 98,195,511EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:3030122 AgrOrtholog
Ensembl Genes ENSMUSG00000075427 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSG00000108748 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000142443.8 UniProtKB/TrEMBL
  ENSMUST00000165379 ENTREZGENE
  ENSMUST00000165379.8 UniProtKB/TrEMBL
Gene3D-CATH Rhodopsin 7-helix transmembrane proteins UniProtKB/TrEMBL
InterPro 7TM_GPCR_Rhodpsn UniProtKB/TrEMBL
  GPCR_Rhodpsn_supfam UniProtKB/TrEMBL
  Olfact_rcpt UniProtKB/TrEMBL
KEGG Report mmu:545140 UniProtKB/TrEMBL
MGD MGI:3030122 ENTREZGENE
NCBI Gene Or10ad1c ENTREZGENE
PANTHER OLFACTORY RECEPTOR UniProtKB/TrEMBL
Pfam 7tm_4 UniProtKB/TrEMBL
PhenoGen Or10ad1c PhenoGen
PRINTS GPCRRHODOPSN UniProtKB/TrEMBL
  OLFACTORYR UniProtKB/TrEMBL
PROSITE G_PROTEIN_RECEP_F1_1 UniProtKB/TrEMBL
  G_PROTEIN_RECEP_F1_2 UniProtKB/TrEMBL
Superfamily-SCOP Family A G protein-coupled receptor-like UniProtKB/TrEMBL
UniProt E9Q1P2 ENTREZGENE, UniProtKB/TrEMBL
  Q7TS14 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2024-10-29 Or10ad1c  olfactory receptor family 10 subfamily AD member 1C  Olfr288  olfactory receptor 288  Symbol and/or name change 5135510 APPROVED
2024-10-29 Olfr288  olfactory receptor 288  Or10ad1c  olfactory receptor family 10 subfamily AD member 1C  Symbol and/or name change 5135510 APPROVED
2024-08-21 Or10ad1c  olfactory receptor family 10 subfamily AD member 1C  Olfr288  olfactory receptor 288  Symbol and/or name change 5135510 APPROVED
2024-08-21 Olfr288  olfactory receptor 288  Or10ad1c  olfactory receptor family 10 subfamily AD member 1C  Symbol and/or name change 5135510 APPROVED
2022-05-21 Or10ad1c  olfactory receptor family 10 subfamily AD member 1C  Olfr288  olfactory receptor 288  Symbol and/or name change 5135510 APPROVED
2016-04-05 Olfr288  olfactory receptor 288  C85333  expressed sequence C85333  Data merged from RGD:1611653 737654 PROVISIONAL