Cox6c2 (cytochrome c oxidase subunit 6C2) - Rat Genome Database

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Gene: Cox6c2 (cytochrome c oxidase subunit 6C2) Mus musculus
Analyze
No known orthologs.
Symbol: Cox6c2
Name: cytochrome c oxidase subunit 6C2
RGD ID: 1620318
MGI Page MGI
Description: Predicted to be located in mitochondrial membrane. Predicted to be part of mitochondrial respiratory chain complex IV. Orthologous to human COX6C (cytochrome c oxidase subunit 6C); PARTICIPATES IN Alzheimer's disease pathway; Huntington's disease pathway; oxidative phosphorylation pathway; INTERACTS WITH aldehydo-D-glucose; D-glucose; fructose.
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: EG621837; Gm6265; predicted pseudogene 6265
RGD Orthologs
Alliance Genes
More Info homologs ...
Related Functional Gene: Cox6c  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391256,420,243 - 56,420,657 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1256,420,378 - 56,420,608 (-)EnsemblGRCm39 Ensembl
GRCm381256,373,458 - 56,373,872 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1256,373,593 - 56,373,823 (-)EnsemblGRCm38mm10GRCm38
MGSCv371257,474,580 - 57,474,810 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361257,291,605 - 57,291,835 (-)NCBIMGSCv36mm8
Celera1257,522,270 - 57,522,524 (-)NCBICelera
Cytogenetic Map12C1NCBI
cM Map1224.33NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References

References - curated
# Reference Title Reference Citation
1. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD

Genomics

Variants

.
Variants in Cox6c2
18 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:55
Count of miRNA genes:55
Interacting mature miRNAs:55
Transcripts:ENSMUST00000149263
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4142234Tmc1m3_mTmc1 modifier 3 (mouse)Not determined12541844077031203Mouse
27226753Femd7_mfemur midshaft diameter 7, 10 week (mouse)12955000084146774Mouse
13207568Tcq14_mtotal cholesterol QTL 14 (mouse)121166000197176774Mouse
1558978Cplaq10_mcircadian period of locomotor activity 10 (mouse)Not determined121534102679040364Mouse
1301574Lmblgq5_mlimb length QTL 5 (mouse)Not determined121759644780956883Mouse
1301989Hdlq18_mHDL QTL 18 (mouse)Not determined122916068563160884Mouse
1300636Gct2_mgranulosa cell tumorigenesis 2 (mouse)Not determined122916068563160884Mouse
4141843Moen3_mmodifier of engrailed QTL 3 (mouse)Not determined122980158463801733Mouse
14747008Mancz10_mmandible centroid size 10 (mouse)122986352263863522Mouse
10402492Dipa8_mdrug induced psychomotor activation 8 (mouse)Not determined123493387268934019Mouse
1300818Bbaa10_mB.burgdorferi-associated arthritis 10 (mouse)Not determined123509100465511019Mouse
4142002Tbqt3_mtibia bone quality traits 3 (mouse)Not determined1235285496109936243Mouse
1357479Splwt1_mspleen weight 1 (mouse)Not determined124169317590887526Mouse
1357757Lnopy2_mlens opacity 2 (mouse)Not determined125284662686846796Mouse
1357749Vtbt13_mvertebral trabecular bone trait 13 (mouse)Not determined125313200287132145Mouse
12904004Opfaq11_mopen field activity QTL 11 (mouse)125315562457276756Mouse
12832727Ahrq1_mairway hyperresponsiveness QTL 1 (mouse)125469591082665939Mouse
12903999Opfaq8_mopen field activity QTL 8 (mouse)125490765357870585Mouse


Expression


Sequence


RefSeq Acc Id: ENSMUST00000149263
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1256,420,378 - 56,420,608 (-)Ensembl
GRCm38.p6 Ensembl1256,373,593 - 56,373,823 (-)Ensembl
RefSeq Acc Id: XM_001473882   ⟹   XP_001473932
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381256,373,593 - 56,373,823 (-)ENTREZGENE
MGSCv371257,474,580 - 57,474,810 (-)RGD
cM Map12 ENTREZGENE
RefSeq Acc Id: XM_001478216   ⟹   XP_001478266
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
Celera1257,522,279 - 57,522,509 (-)RGD

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:3649160 AgrOrtholog
Ensembl Genes ENSMUSG00000066491 Ensembl
MGD MGI:3649160 ENTREZGENE
NCBI Gene Cox6c2 ENTREZGENE
PhenoGen Cox6c2 PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2018-09-25 Cox6c2  cytochrome c oxidase subunit 6C2  Gm6265  predicted pseudogene 6265  Symbol and/or name change 5135510 APPROVED
2011-07-27 Gm6265  predicted pseudogene 6265  Gm6265  predicted gene 6265  Symbol and/or name change 5135510 APPROVED