Gm6616 (predicted gene 6616) - Rat Genome Database

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Gene: Gm6616 (predicted gene 6616) Mus musculus
Analyze
Symbol: Gm6616
Name: predicted gene 6616
RGD ID: 1620294
MGI Page MGI
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: EG625730
Related Functional Gene: Snrpf  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391447,806,866 - 47,807,293 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1447,806,983 - 47,807,231 (+)EnsemblGRCm39 Ensembl
GRCm381447,569,409 - 47,569,836 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1447,569,526 - 47,569,774 (+)EnsemblGRCm38mm10GRCm38
MGSCv371448,188,898 - 48,189,452 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361446,491,403 - 46,491,654 (+)NCBIMGSCv36mm8
Celera1443,759,578 - 43,760,132 (+)NCBICelera
Cytogenetic Map14C1NCBI
cM Map1424.6NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:14610273  


Genomics

Variants

.
Variants in Gm6616
17 total Variants

QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4141864Mrdq4_mmodifier of retinal degeneration QTL 4 (mouse)Not determined992324548765082Mouse
1300544Hypn_mhyperinsulinemia (mouse)Not determined141516061649160765Mouse
1301372Sluc13_msusceptibility to lung cancer 13 (mouse)Not determined141882760452827726Mouse
1357589Kdnw2_mkidney weight 2 (mouse)Not determined1420887473121269804Mouse
1357527Epfpq1_mepididymal fat percentage QTL 1 (mouse)Not determined142106245071885801Mouse
14746973Manh76_mmandible shape 76 (mouse)142228721756287217Mouse
4142485Modor2_mmodifier of ocular retardation 2 (mouse)Not determined142492624858179769Mouse
13506929Recrq10_mrecombination rate in male meiosis QTL 10 (mouse)142792195761137449Mouse
10043886Cia49_mcollagen induced arthritis QTL 49 (mouse)Not determined142999699463997133Mouse
27226775Tibl7_mtibia length 7, 5 week (mouse)143032195748837457Mouse
27226744Metcl6_mmetatarsal-calcaneal length 6, 5 week (mouse)143032195752937457Mouse
27226774Tibl15_mtibia length 15, 10 week (mouse)143032195787937436Mouse
1300909Ath13_matherosclerosis 13 (mouse)Not determined143033525064335381Mouse
1300998Cia17_mcollagen induced arthritis 17 (mouse)Not determined143033525064335381Mouse
27226737Metcl12_mmetatarsal-calcaneal length 12, 10 week (mouse)143322195759437449Mouse
27226727Tibl21_mtibia length 21, 16 week (mouse)143412195752937457Mouse
1300625Cosz2_mcocaine seizure 2 (mouse)Not determined143504579768785736Mouse
10043887Cia50_mcollagen induced arthritis QTL 50 (mouse)Not determined143743018571430320Mouse
4142419Tgq26_mtriglyceride QTL 26 (mouse)Not determined4033731974337319Mouse
1301777Bglq15_mbody growth late QTL 15 (mouse)Not determined144296241676962593Mouse
1301424Skull21_mskull morphology 21 (mouse)Not determined144296241676962593Mouse
1300805Mors3_mmodifier of obesity related sterility 3 (mouse)Not determined144303727077037418Mouse
1301091Bbaa21_mB.burgdorferi-associated arthritis 21 (mouse)Not determined144306584777066045Mouse
4141400Nilac8_mnicotine induced locomotor activity 8 (mouse)Not determined144306584777066045Mouse
4141484Hcbip1_mhexachlorobenzene induced porphyria 1 (mouse)Not determined4733525059962593Mouse


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000228790
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1447,806,983 - 47,807,231 (+)Ensembl
GRCm38.p6 Ensembl1447,569,526 - 47,569,774 (+)Ensembl
RefSeq Acc Id: XM_890298
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv371448,188,898 - 48,189,452 (+)RGD
RefSeq Acc Id: XM_906000
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
Celera1443,759,578 - 43,760,132 (+)RGD
Protein Sequences
GenBank Protein EDL20754 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences

Promoters
RGD ID:6825014
Promoter ID:MM_KWN:16480
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day4,   Brain,   ES_Cell,   Kidney,   MEF_B4
Transcripts:XM_890298_GM6616
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361448,188,011 - 48,188,511 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000115571 Ensembl
MGD MGI:3647406 ENTREZGENE
NCBI Gene 625730 ENTREZGENE
PhenoGen Gm6616 PhenoGen