Gm6993 (predicted gene 6993) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Gm6993 (predicted gene 6993) Mus musculus
Analyze
No known orthologs.
Symbol: Gm6993
Name: predicted gene 6993
RGD ID: 1620272
MGI Page MGI
Description: Predicted to contribute to serine C-palmitoyltransferase activity. Predicted to be involved in ceramide biosynthetic process. Predicted to be part of serine C-palmitoyltransferase complex.
Type: protein-coding
RefSeq Status: MODEL
Previously known as: EG629667; predicted gene, EG629667; serine palmitoyltransferase small subunit A pseudogene; serine palmitoyltransferase small subunit A-like
RGD Orthologs
Alliance Genes
More Info homologs ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391231,290,769 - 31,290,978 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1231,290,769 - 31,290,978 (+)EnsemblGRCm39 Ensembl
GRCm381231,240,770 - 31,240,979 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1231,240,770 - 31,240,979 (+)EnsemblGRCm38mm10GRCm38
MGSCv371231,925,635 - 31,925,844 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361231,826,834 - 31,827,034 (+)NCBIMGSCv36mm8
Celera1232,688,815 - 32,689,051 (+)NCBICelera
Cytogenetic Map12A2NCBI
cM Map1213.34NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:21873635  


Genomics

Variants

.
Variants in Gm6993
11 total Variants

QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
10401249Bglu15_mblood glucose level 15 (mouse)Not determined121062064244620809Mouse
1301925Ath6_matherosclerosis 6 (mouse)Not determined12132758756Mouse
1301207Circp1_mcircadian photosensitivity 1 (mouse)Not determined12133430339Mouse
13208568Bmiq11_mbody mass index QTL 11 (mouse)12805000040049999Mouse
1301574Lmblgq5_mlimb length QTL 5 (mouse)Not determined121759644780956883Mouse
1300870Ath18_matherosclerosis 18 (mouse)Not determined121825996652260067Mouse
4141660Nbwa1_mNZB and NZW autoimmunity 1 (mouse)Not determined1234013434340302Mouse
13524843Ppiq8_mprepulse inhibition QTL 8 (mouse)121104319450945796Mouse
4141516slwr_mslowlearner (mouse)Not determined1239247546392614Mouse
10043977Obq34_mobesity QTL 34 (mouse)Not determined121514733149147331Mouse
1558978Cplaq10_mcircadian period of locomotor activity 10 (mouse)Not determined121534102679040364Mouse
1300636Gct2_mgranulosa cell tumorigenesis 2 (mouse)Not determined122916068563160884Mouse
1302172Skts5_mskin tumor susceptibility 5 (mouse)Not determined122214886656149016Mouse
13207568Tcq14_mtotal cholesterol QTL 14 (mouse)121166000197176774Mouse
4141843Moen3_mmodifier of engrailed QTL 3 (mouse)Not determined122980158463801733Mouse
4142234Tmc1m3_mTmc1 modifier 3 (mouse)Not determined12541844077031203Mouse
1301163Eae16_msusceptibility to experimental allergic encephalomyelitis 16 (mouse)Not determined12772315841723301Mouse
14747008Mancz10_mmandible centroid size 10 (mouse)122986352263863522Mouse
13524839Ppiq10_mprepulse inhibition QTL 10 (mouse)121304319554945798Mouse
26884413Bzwq9_mbi-zygomatic width QTL 9, 10 week (mouse)121615000147746783Mouse
1301723Fcsa7_mfemoral cross-sectional area 7 (mouse)Not determined12949100443491112Mouse
15039339Nmrs29_mNAFLD-associated magnetic resonance shift 29 (mouse)121782585251825852Mouse
12904956Edlmmq10_mextensor digitorum longus muscle mass QTL 10 (mouse)121973983353739833Mouse
1301037Cd4ts5_mCD4 T cell subset 5 (mouse)Not determined12835244442352581Mouse
27226753Femd7_mfemur midshaft diameter 7, 10 week (mouse)12955000084146774Mouse
14746972Manh72_mmandible shape 72 (mouse)121061528144615281Mouse
10043848Hdlq90_mHDL QTL 90 (mouse)Not determined121783993951840081Mouse
1301989Hdlq18_mHDL QTL 18 (mouse)Not determined122916068563160884Mouse


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_036157710 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide CT571245 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000219110   ⟹   ENSMUSP00000151468
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1231,290,769 - 31,290,978 (+)Ensembl
GRCm38.p6 Ensembl1231,240,770 - 31,240,979 (+)Ensembl
RefSeq Acc Id: XM_036157710   ⟹   XP_036013603
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391231,290,769 - 31,290,978 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_036013603 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000151468
  ENSMUSP00000151468.2
RefSeq Acc Id: ENSMUSP00000151468   ⟸   ENSMUST00000219110
RefSeq Acc Id: XP_036013603   ⟸   XM_036157710
- UniProtKB: A0A1W2P738 (UniProtKB/TrEMBL)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A1W2P738-F1-model_v2 AlphaFold A0A1W2P738 1-69 view protein structure


Additional Information

Database Acc Id Source(s)
AGR Gene MGI:3644833 AgrOrtholog
Ensembl Genes ENSMUSG00000112187 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000219110 ENTREZGENE
  ENSMUST00000219110.2 UniProtKB/TrEMBL
InterPro Ser_palmitoyltrfase_ssu-like UniProtKB/TrEMBL
MGD MGI:3644833 ENTREZGENE
NCBI Gene Gm6993 ENTREZGENE
PANTHER SERINE PALMITOYLTRANSFERASE SMALL SUBUNIT A UniProtKB/TrEMBL
  SERINE PALMITOYLTRANSFERASE SMALL SUBUNIT A UniProtKB/TrEMBL
Pfam SPT_ssu-like UniProtKB/TrEMBL
PhenoGen Gm6993 PhenoGen
UniProt A0A1W2P738 ENTREZGENE, UniProtKB/TrEMBL