Gm7340 (predicted gene 7340) - Rat Genome Database

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Gene: Gm7340 (predicted gene 7340) Mus musculus
Analyze
Symbol: Gm7340
Name: predicted gene 7340
RGD ID: 1620242
MGI Page MGI
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: MODEL
Previously known as: EG664791
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X110,481,332 - 110,484,168 (+)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX110,481,396 - 110,484,147 (+)EnsemblGRCm39 Ensembl
GRCm38X111,571,635 - 111,574,471 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX111,571,699 - 111,574,450 (+)EnsemblGRCm38mm10GRCm38
MGSCv37X108,685,328 - 108,688,059 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X107,688,642 - 107,691,394 (+)NCBIMGSCv36mm8
CeleraX98,250,777 - 98,253,524 (+)NCBICelera
Cytogenetic MapXE1NCBI
cM MapX48.29NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

.
Variants in Gm7340
55 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:31
Count of miRNA genes:31
Interacting mature miRNAs:31
Transcripts:ENSMUST00000119729
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357433Dbts2_mdiabetes 2 (mouse)Not determinedX7226295150107038Mouse
4141630Gct6_mgranulosa cell tumorigenesis 6 (mouse)Not determined47179121129764756Mouse
13824980Ferq1_mgenetic fertility QTL 1 (mouse)X54045360148782996Mouse
4141665Mhysq2_mmale hybrid sterility QTL 2 (mouse)Not determined71453852139203212Mouse
11075102Modc2_mmodifier of Odc2 (mouse)X80189914114190059Mouse
4141803Lmr30_mleishmaniasis resistance 30 (mouse)Not determined85062606119062720Mouse
13208552Wght12_mweight 12 (mouse)X94043606149782996Mouse
13208556Lgth14_mbody length 14 (mouse)X94043606149782996Mouse
1357823Spha3_msperm head anomaly 3 (mouse)Not determinedX102055848162758941Mouse


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000119729
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX110,481,396 - 110,484,147 (+)Ensembl
GRCm38.p6 EnsemblX111,571,699 - 111,574,450 (+)Ensembl
RefSeq Acc Id: XR_141488
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38X111,571,719 - 111,574,450 (+)ENTREZGENE
cM MapX ENTREZGENE
RefSeq Acc Id: XR_142413
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
CeleraX98,250,777 - 98,253,524 (+)RGD

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000083898 Ensembl
MGD MGI:3648496 ENTREZGENE
NCBI Gene 664791 ENTREZGENE
PhenoGen Gm7340 PhenoGen