Polr1d (polymerase (RNA) I polypeptide D) - Rat Genome Database

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Gene: Polr1d (polymerase (RNA) I polypeptide D) Mus musculus
Analyze
Symbol: Polr1d
Name: polymerase (RNA) I polypeptide D
RGD ID: 1620098
MGI Page MGI
Description: Predicted to enable DNA binding activity; DNA-directed 5'-3' RNA polymerase activity; and protein dimerization activity. Predicted to contribute to RNA polymerase I activity and RNA polymerase III activity. Predicted to be involved in transcription by RNA polymerase III and transcription elongation by RNA polymerase I. Part of RNA polymerase I complex. Is expressed in several structures, including alimentary system; early conceptus; genitourinary system; liver; and nervous system. Human ortholog(s) of this gene implicated in Treacher Collins syndrome 2. Orthologous to human POLR1D (RNA polymerase I and III subunit D).
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: 1110003G10Rik; 16kD; 16kDa; AC19; AU018636; C81327; DNA-directed RNA polymerase I 16 kDa polypeptide; DNA-directed RNA polymerase I subunit D; DNA-directed RNA polymerases I and III subunit RPAC2; MGC107156; mRP; mRPA16; RNA polymerase 1-3; RNA polymerase I 16 kDa subunit; RNA polymerases I and III subunit AC2; RPA16; Rpo; Rpo1-3; snoRNA MBI-50
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Related Pseudogenes: Gm12751   Gm8686  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395147,013,525 - 147,048,171 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5147,013,860 - 147,048,407 (+)EnsemblGRCm39 Ensembl
GRCm385147,076,715 - 147,111,361 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5147,077,050 - 147,111,597 (+)EnsemblGRCm38mm10GRCm38
MGSCv375147,889,117 - 147,922,935 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365147,387,890 - 147,421,708 (+)NCBIMGSCv36mm8
Celera5145,066,833 - 145,100,924 (+)NCBICelera
Cytogenetic Map5G3NCBI
cM Map586.73NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Cell growth- and differentiation-dependent regulation of RNA polymerase III transcription. Dumay-Odelot H, etal., Cell Cycle. 2010 Sep 15;9(18):3687-99. Epub 2010 Sep 1.
2. Characterization of human RNA polymerase III identifies orthologues for Saccharomyces cerevisiae RNA polymerase III subunits. Hu P, etal., Mol Cell Biol. 2002 Nov;22(22):8044-55.
3. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
4. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
5. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
7. RNA polymerase I activity is regulated at multiple steps in the transcription cycle: recent insights into factors that influence transcription elongation. Schneider DA Gene. 2012 Feb 10;493(2):176-84. doi: 10.1016/j.gene.2011.08.006. Epub 2011 Aug 26.
8. Conservation between the RNA polymerase I, II, and III transcription initiation machineries. Vannini A and Cramer P, Mol Cell. 2012 Feb 24;45(4):439-46. doi: 10.1016/j.molcel.2012.01.023.
Additional References at PubMed
PMID:8889548   PMID:8955128   PMID:10349636   PMID:10725249   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11217851   PMID:11387227   PMID:12466851   PMID:12477932   PMID:12520002  
PMID:12904583   PMID:14610273   PMID:14681479   PMID:15226435   PMID:15782199   PMID:16141072   PMID:16141073   PMID:16602821   PMID:17967808   PMID:18799693   PMID:20059953   PMID:21267068  
PMID:21873635   PMID:30457570   PMID:33022126   PMID:34321999   PMID:35881792   PMID:37257918   PMID:38355793  


Genomics

Comparative Map Data
Polr1d
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395147,013,525 - 147,048,171 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5147,013,860 - 147,048,407 (+)EnsemblGRCm39 Ensembl
GRCm385147,076,715 - 147,111,361 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5147,077,050 - 147,111,597 (+)EnsemblGRCm38mm10GRCm38
MGSCv375147,889,117 - 147,922,935 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365147,387,890 - 147,421,708 (+)NCBIMGSCv36mm8
Celera5145,066,833 - 145,100,924 (+)NCBICelera
Cytogenetic Map5G3NCBI
cM Map586.73NCBI
POLR1D
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381327,620,743 - 27,667,411 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1327,620,742 - 27,744,237 (+)EnsemblGRCh38hg38GRCh38
GRCh371328,194,880 - 28,241,548 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361327,094,003 - 27,139,548 (+)NCBINCBI36Build 36hg18NCBI36
Build 341327,094,028 - 27,095,583NCBI
Celera139,264,634 - 9,310,177 (+)NCBICelera
Cytogenetic Map13q12.2NCBI
HuRef139,016,135 - 9,062,816 (+)NCBIHuRef
CHM1_11328,163,132 - 28,209,817 (+)NCBICHM1_1
T2T-CHM13v2.01326,841,857 - 26,888,521 (+)NCBIT2T-CHM13v2.0
Polr1d
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81213,084,505 - 13,118,069 (-)NCBIGRCr8
mRatBN7.2127,970,592 - 8,004,157 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl127,970,595 - 8,005,624 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx128,773,354 - 8,806,907 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0129,396,541 - 9,430,094 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0128,419,946 - 8,453,499 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0129,693,828 - 9,727,416 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl129,693,779 - 9,727,489 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01211,806,326 - 11,839,715 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4128,421,463 - 8,454,852 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera129,796,332 - 9,829,961 (-)NCBICelera
Cytogenetic Map12p11NCBI
Polr1d
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554977,029,557 - 7,029,931 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554977,029,556 - 7,030,128 (+)NCBIChiLan1.0ChiLan1.0
POLR1D
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21427,218,315 - 27,263,832 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11318,323,058 - 18,368,540 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0138,911,839 - 8,957,363 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11327,256,573 - 27,302,114 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1327,256,567 - 27,373,830 (+)Ensemblpanpan1.1panPan2
POLR1D
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12511,952,733 - 11,998,675 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2511,954,033 - 11,999,797 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2512,016,282 - 12,062,301 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02512,081,883 - 12,127,930 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2512,081,887 - 12,129,048 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12511,976,518 - 12,022,526 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02511,968,635 - 12,014,496 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02512,013,184 - 12,059,179 (-)NCBIUU_Cfam_GSD_1.0
LOC101959095
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945173,109,357 - 173,110,972 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647222,841,094 - 22,881,713 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647222,841,094 - 22,842,798 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
POLR1D
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl115,044,329 - 5,089,766 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1115,044,274 - 5,045,921 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2114,679,057 - 4,680,713 (+)NCBISscrofa10.2Sscrofa10.2susScr3
POLR1D
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.136,773,426 - 6,819,045 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605737,572,551 - 37,618,065 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Polr1d
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462477610,810,952 - 10,875,214 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462477610,872,975 - 10,874,852 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:256
Count of miRNA genes:230
Interacting mature miRNAs:240
Transcripts:ENSMUST00000050970, ENSMUST00000110557
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301363Pbwg13_mpostnatal body weight growth 13 (mouse)Not determined5125133457151758149Mouse
4141081Nidd7k_mNidd7 on KK-A (mouse)Not determined119945037149347326Mouse
11528552Scram1_mspinal cord resistance to astrocytoma modifier 1 (mouse)5121455402151758149Mouse
1300827Cora1_mcorrelation in cytokine production 1 (mouse)Not determined5115156883149157015Mouse
1302079Lbw3_mlupus NZB x NZW 3 (mouse)Not determined5124700335151758149Mouse
13504737Ifvrq5_minfluenza virus resistance QTL 5 (mouse)5139509801151658149Mouse
13504734Ifvrq4_minfluenza virus resistance QTL 4 (mouse)5139985755151658149Mouse
1301986Bpq4_mblood pressure QTL 4 (mouse)Not determined5121555236151758149Mouse
13504735Ifvrq7_minfluenza virus resistance QTL 7 (mouse)5139509801151658149Mouse
1301857Bglq14_mbody growth late QTL 14 (mouse)Not determined5118948964151758149Mouse
12880406Jcdq2_mjoint cartilage degeneration QTL 2 (mouse)5129787831151758149Mouse
1301226Bbaa2_mB.burgdorferi-associated arthritis 2 (mouse)Not determined5115156883149157015Mouse
4141218Ath24_matherosclerosis 24 (mouse)Not determined129520084151758149Mouse
11049557Lmr26_mleishmaniasis resistance 26 (mouse)5133925558151758149Mouse

Markers in Region
RH127056  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm385147,111,115 - 147,111,353UniSTSGRCm38
GRCm38434,354,610 - 34,354,848UniSTSGRCm38
MGSCv37434,301,859 - 34,302,097UniSTSGRCm37
MGSCv375147,922,691 - 147,922,929UniSTSGRCm37
Celera5145,100,680 - 145,100,918UniSTS
Cytogenetic Map4A5UniSTS
Cytogenetic Map5G3UniSTS
RH135944  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38434,354,049 - 34,354,257UniSTSGRCm38
MGSCv37434,301,298 - 34,301,506UniSTSGRCm37
Cytogenetic Map4A5UniSTS
Cytogenetic Map5G3UniSTS


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_009087 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_181730 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030254228 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030254229 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030254230 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030254231 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030254232 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030254233 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036164932 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AA023617 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF357431 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK002811 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK003353 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK154241 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK185352 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL513345 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC002025 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC024394 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC087884 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BF462386 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BM948930 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466614 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  D86609 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000050970   ⟹   ENSMUSP00000058355
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5147,013,860 - 147,015,896 (+)Ensembl
GRCm38.p6 Ensembl5147,077,050 - 147,079,086 (+)Ensembl
Ensembl Acc Id: ENSMUST00000110557   ⟹   ENSMUSP00000106186
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5147,014,156 - 147,048,171 (+)Ensembl
GRCm38.p6 Ensembl5147,077,346 - 147,111,361 (+)Ensembl
Ensembl Acc Id: ENSMUST00000196288
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5147,042,176 - 147,047,796 (+)Ensembl
GRCm38.p6 Ensembl5147,105,366 - 147,110,986 (+)Ensembl
Ensembl Acc Id: ENSMUST00000200993   ⟹   ENSMUSP00000144185
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5147,014,358 - 147,048,407 (+)Ensembl
GRCm38.p6 Ensembl5147,077,548 - 147,111,597 (+)Ensembl
Ensembl Acc Id: ENSMUST00000201007
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5147,037,974 - 147,047,680 (+)Ensembl
GRCm38.p6 Ensembl5147,101,164 - 147,110,870 (+)Ensembl
Ensembl Acc Id: ENSMUST00000202444   ⟹   ENSMUSP00000144455
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5147,014,374 - 147,048,384 (+)Ensembl
GRCm38.p6 Ensembl5147,077,564 - 147,111,574 (+)Ensembl
RefSeq Acc Id: NM_009087   ⟹   NP_033113
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395147,014,156 - 147,015,896 (+)NCBI
GRCm385147,077,346 - 147,079,086 (+)NCBI
MGSCv375147,889,117 - 147,922,935 (+)RGD
Celera5145,066,638 - 145,100,926 (+)NCBI
cM Map5 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_181730   ⟹   NP_859419
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395147,014,156 - 147,048,171 (+)NCBI
GRCm385147,077,346 - 147,111,361 (+)NCBI
MGSCv375147,889,117 - 147,922,935 (+)RGD
Celera5145,066,638 - 145,100,926 (+)NCBI
cM Map5 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_030254228   ⟹   XP_030110088
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395147,013,525 - 147,048,170 (+)NCBI
GRCm385147,076,715 - 147,111,360 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030254229   ⟹   XP_030110089
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395147,013,821 - 147,048,170 (+)NCBI
GRCm385147,077,011 - 147,111,360 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030254230   ⟹   XP_030110090
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395147,013,564 - 147,048,170 (+)NCBI
GRCm385147,076,754 - 147,111,360 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030254231   ⟹   XP_030110091
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395147,013,525 - 147,048,170 (+)NCBI
GRCm385147,076,715 - 147,111,360 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030254232   ⟹   XP_030110092
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395147,013,616 - 147,048,170 (+)NCBI
GRCm385147,076,806 - 147,111,360 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030254233   ⟹   XP_030110093
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395147,035,813 - 147,048,170 (+)NCBI
GRCm385147,099,003 - 147,111,360 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036164932   ⟹   XP_036020825
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395147,013,560 - 147,048,170 (+)NCBI
Sequence:
RefSeq Acc Id: NP_033113   ⟸   NM_009087
- Peptide Label: isoform 1
- UniProtKB: P97304 (UniProtKB/Swiss-Prot),   Q545W2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_859419   ⟸   NM_181730
- Peptide Label: isoform 2
- UniProtKB: Q9D1M1 (UniProtKB/TrEMBL),   Q8R1M3 (UniProtKB/TrEMBL),   Q99M44 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_030110088   ⟸   XM_030254228
- Peptide Label: isoform X1
- UniProtKB: Q9D1M1 (UniProtKB/TrEMBL),   Q8R1M3 (UniProtKB/TrEMBL),   Q99M44 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_030110091   ⟸   XM_030254231
- Peptide Label: isoform X1
- UniProtKB: Q9D1M1 (UniProtKB/TrEMBL),   Q8R1M3 (UniProtKB/TrEMBL),   Q99M44 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_030110090   ⟸   XM_030254230
- Peptide Label: isoform X1
- UniProtKB: Q9D1M1 (UniProtKB/TrEMBL),   Q8R1M3 (UniProtKB/TrEMBL),   Q99M44 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_030110092   ⟸   XM_030254232
- Peptide Label: isoform X1
- UniProtKB: Q9D1M1 (UniProtKB/TrEMBL),   Q8R1M3 (UniProtKB/TrEMBL),   Q99M44 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_030110089   ⟸   XM_030254229
- Peptide Label: isoform X1
- UniProtKB: Q9D1M1 (UniProtKB/TrEMBL),   Q8R1M3 (UniProtKB/TrEMBL),   Q99M44 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_030110093   ⟸   XM_030254233
- Peptide Label: isoform X2
Ensembl Acc Id: ENSMUSP00000106186   ⟸   ENSMUST00000110557
Ensembl Acc Id: ENSMUSP00000144455   ⟸   ENSMUST00000202444
Ensembl Acc Id: ENSMUSP00000058355   ⟸   ENSMUST00000050970
Ensembl Acc Id: ENSMUSP00000144185   ⟸   ENSMUST00000200993
RefSeq Acc Id: XP_036020825   ⟸   XM_036164932
- Peptide Label: isoform X1
- UniProtKB: Q9D1M1 (UniProtKB/TrEMBL),   Q8R1M3 (UniProtKB/TrEMBL),   Q99M44 (UniProtKB/TrEMBL)
Protein Domains
DNA-directed RNA polymerase RBP11-like dimerisation

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P97304-F1-model_v2 AlphaFold P97304 1-133 view protein structure

Promoters
RGD ID:6888798
Promoter ID:EPDNEW_M7850
Type:initiation region
Name:Polr1d_1
Description:Mus musculus polymerase I polypeptide D , transcript variant2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm385147,077,564 - 147,077,624EPDNEW
RGD ID:6837831
Promoter ID:MM_KWN:44886
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day3,   3T3L1_Day4,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000110557,   OTTMUST00000060540,   OTTMUST00000060550
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv365147,887,111 - 147,889,292 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:108403 AgrOrtholog
Ensembl Genes ENSMUSG00000029642 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000050970 ENTREZGENE
  ENSMUST00000050970.4 UniProtKB/Swiss-Prot
  ENSMUST00000110557 ENTREZGENE
  ENSMUST00000110557.5 UniProtKB/TrEMBL
  ENSMUST00000200993.2 UniProtKB/TrEMBL
  ENSMUST00000202444.2 UniProtKB/TrEMBL
Gene3D-CATH 3.30.1360.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro POLR1D-like UniProtKB/TrEMBL
  RBP11-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RBP11-like_dimer UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RNA_pol_Rpb11_13-16kDa_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RNAP_AC19 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Rpo11-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:20018 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:108403 ENTREZGENE
NCBI Gene 20018 ENTREZGENE
PANTHER DNA-DIRECTED RNA POLYMERASE I,II,III UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  DNA-DIRECTED RNA POLYMERASES I AND III SUBUNIT RPAC2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR34769 UniProtKB/TrEMBL
  RCG42593, ISOFORM CRA_A UniProtKB/TrEMBL
Pfam RNA_pol_L_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Polr1d PhenoGen
PROSITE RNA_POL_L_13KD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF55257 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0J9YUH6_MOUSE UniProtKB/TrEMBL
  A0A0J9YV27_MOUSE UniProtKB/TrEMBL
  P97304 ENTREZGENE
  Q545W2 ENTREZGENE, UniProtKB/TrEMBL
  Q8R1M3 ENTREZGENE, UniProtKB/TrEMBL
  Q99M44 ENTREZGENE, UniProtKB/TrEMBL
  Q9D1M1 ENTREZGENE, UniProtKB/TrEMBL
  RPAC2_MOUSE UniProtKB/Swiss-Prot