Wrap73 (WD repeat containing, antisense to Trp73) - Rat Genome Database

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Gene: Wrap73 (WD repeat containing, antisense to Trp73) Mus musculus
Analyze
Symbol: Wrap73
Name: WD repeat containing, antisense to Trp73
RGD ID: 1620058
MGI Page MGI
Description: Predicted to be involved in mitotic spindle assembly and positive regulation of non-motile cilium assembly. Predicted to act upstream of or within cell projection organization. Predicted to be located in centrosome and ciliary basal body. Predicted to be part of MWP complex. Predicted to be active in microtubule organizing center and mitotic spindle. Is expressed in cerebral cortex and cerebral cortex mantle layer. Orthologous to human WRAP73 (WD repeat containing, antisense to TP73).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 2610044M17Rik; 5330425N03Rik; Dd57; WD repeat domain 8; WD repeat-containing protein 8; WD repeat-containing protein antisense to TP73; WD repeat-containing protein WRAP73; Wdr; Wdr8
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394154,226,811 - 154,241,278 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4154,226,829 - 154,251,877 (+)EnsemblGRCm39 Ensembl
GRCm384154,142,354 - 154,156,821 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4154,142,372 - 154,167,420 (+)EnsemblGRCm38mm10GRCm38
MGSCv374153,516,481 - 153,530,927 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364152,986,172 - 153,000,618 (+)NCBIMGSCv36mm8
Celera4156,426,565 - 156,440,737 (+)NCBICelera
Cytogenetic Map4E2NCBI
cM Map483.86NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:11401440   PMID:12466851   PMID:12477932   PMID:15782199   PMID:16141072   PMID:16141073   PMID:21267068   PMID:21677750  
PMID:21873635   PMID:26675238  


Genomics

Comparative Map Data
Wrap73
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394154,226,811 - 154,241,278 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4154,226,829 - 154,251,877 (+)EnsemblGRCm39 Ensembl
GRCm384154,142,354 - 154,156,821 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4154,142,372 - 154,167,420 (+)EnsemblGRCm38mm10GRCm38
MGSCv374153,516,481 - 153,530,927 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364152,986,172 - 153,000,618 (+)NCBIMGSCv36mm8
Celera4156,426,565 - 156,440,737 (+)NCBICelera
Cytogenetic Map4E2NCBI
cM Map483.86NCBI
WRAP73
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3813,630,770 - 3,650,103 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl13,630,767 - 3,652,761 (-)EnsemblGRCh38hg38GRCh38
GRCh3713,547,334 - 3,566,667 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3613,537,199 - 3,556,497 (-)NCBINCBI36Build 36hg18NCBI36
Build 3413,570,496 - 3,589,794NCBI
Celera12,802,433 - 2,821,099 (-)NCBICelera
Cytogenetic Map1p36.32NCBI
HuRef12,843,724 - 2,862,381 (-)NCBIHuRef
CHM1_113,534,011 - 3,552,947 (-)NCBICHM1_1
T2T-CHM13v2.013,140,840 - 3,159,976 (-)NCBIT2T-CHM13v2.0
Wrap73
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85169,988,538 - 170,004,071 (+)NCBIGRCr8
mRatBN7.25164,706,112 - 164,721,645 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5164,706,163 - 164,721,643 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5167,410,277 - 167,425,747 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05169,231,693 - 169,247,165 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05169,194,210 - 169,209,682 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05171,441,471 - 171,455,795 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5171,441,560 - 171,455,650 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05174,926,481 - 174,935,890 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45171,103,735 - 171,109,776 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.15171,114,229 - 171,120,271 (+)NCBI
Celera5162,917,439 - 162,933,352 (+)NCBICelera
Cytogenetic Map5q36NCBI
Wrap73
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554867,992,015 - 8,006,115 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554867,992,684 - 8,006,121 (+)NCBIChiLan1.0ChiLan1.0
WRAP73
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21224,659,295 - 224,678,050 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11223,304,110 - 223,323,173 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v012,302,331 - 2,320,946 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.113,425,648 - 3,443,952 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl13,425,648 - 3,444,318 (-)Ensemblpanpan1.1panPan2
WRAP73
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1558,160,438 - 58,176,011 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl558,160,431 - 58,175,920 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha558,170,976 - 58,188,046 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0558,361,437 - 58,378,507 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl558,361,444 - 58,376,999 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1558,375,913 - 58,392,979 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0558,244,681 - 58,261,755 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0558,634,934 - 58,652,000 (-)NCBIUU_Cfam_GSD_1.0
Wrap73
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505829,212,688 - 29,227,332 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936737238,573 - 255,356 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936737238,615 - 253,495 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
WRAP73
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl665,155,209 - 65,167,079 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1665,155,201 - 65,167,091 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2659,872,079 - 59,883,951 (+)NCBISscrofa10.2Sscrofa10.2susScr3
WRAP73
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.120128,037,727 - 128,056,981 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl20128,037,821 - 128,056,770 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605432,313,684 - 32,333,998 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Wrap73
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248186,838,376 - 6,850,020 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248186,838,261 - 6,850,115 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Wrap73
556 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:717
Count of miRNA genes:513
Interacting mature miRNAs:580
Transcripts:ENSMUST00000030895, ENSMUST00000132562, ENSMUST00000142665, ENSMUST00000146734
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
11567249Elorr3_methanol induced loss of righting response 3 (mouse)43722677156268235Mouse
26884437Sklq13_mskull length QTL 13, 16 week (mouse)457700000155684457Mouse
13503348Bntq18_mbone traits QTL 18 (mouse)4120617848154617995Mouse
10412210Cypr6_mcytokine production 6 (mouse)Not determined4120617848154617995Mouse
4141180Ssic1_msusceptibility to small intestinal cancer 1 (mouse)Not determined120674005154674151Mouse
1300803Sluc6_msusceptibility to lung cancer 6 (mouse)Not determined4120674005154674151Mouse
10043985Stheal12_msoft tissue heal 12 (mouse)Not determined4121342649155342753Mouse
4142061Chlq16_mcirculating hormone level QTL 16 (mouse)Not determined4121342649155342753Mouse
1301452Elsgp1_melevated serum gp70 1 (mouse)Not determined4121342649155342753Mouse
10755531Lymph3_mlymphocyte differential 3 (mouse)4124553483156860686Mouse
1300858Tafat_mtally ho associated mesenteric fat pad weight (mouse)Not determined4124621281156860686Mouse
4142139Adip12_madiposity 12 (mouse)Not determined4124621281156860686Mouse
1301982Pltiq1_mphospholipid transfer protein inducibility QTL 1 (mouse)Not determined4124621281156860686Mouse
1300933Cdcs9_mcytokine deficiency colitis susceptibility 9 (mouse)Not determined4125230872156860686Mouse
1300621Tpnr1_mthermal pain response 1 (mouse)Not determined4125230872156860686Mouse
10045620Heal22_mwound healing/regeneration 22 (mouse)Not determined4125230872156860686Mouse
11533916Mts1_mmammary tumor susceptibility 1 (mouse)4125289325156860686Mouse
10043996Gct5_mgranulosa cell tumorigenesis 5 (mouse)Not determined4127784226156860686Mouse
4142481Gct1_mgranulosa cell tumorigenesis 1 (mouse)Not determined4127784226156860686Mouse
1300874Gasa2_mgastritis type A susceptibility locus 2 (mouse)Not determined4133010494156860686Mouse
4142077Ignpq2_mIgA nephropathy QTL 2 (mouse)Not determined4133676733156860686Mouse
1301108Scon2_msucrose consumption 2 (mouse)Not determined4134654451156860686Mouse
1300537Ap3q_malcohol preference 3 QTL (mouse)Not determined4134654451156860686Mouse
1300780Cocrb16_mcocaine related behavior 16 (mouse)Not determined4138943725156860686Mouse

Markers in Region
UniSTS:235112  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm384154,156,573 - 154,156,772UniSTSGRCm38
MGSCv374153,530,682 - 153,530,881UniSTSGRCm37
Celera4156,440,492 - 156,440,691UniSTS
Cytogenetic Map4E2UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_021499 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036164284 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001784168 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_003954989 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004941939 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB034911 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK011773 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK051688 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK156969 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK160273 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK160331 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK172690 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK182927 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL806525 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC016120 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC064111 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BX465212 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY063723 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466594 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000030895   ⟹   ENSMUSP00000030895
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4154,226,829 - 154,241,273 (+)Ensembl
GRCm38.p6 Ensembl4154,142,372 - 154,156,816 (+)Ensembl
RefSeq Acc Id: ENSMUST00000132562
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4154,239,672 - 154,251,877 (+)Ensembl
GRCm38.p6 Ensembl4154,155,215 - 154,167,420 (+)Ensembl
RefSeq Acc Id: ENSMUST00000142665
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4154,226,866 - 154,241,273 (+)Ensembl
GRCm38.p6 Ensembl4154,142,409 - 154,156,816 (+)Ensembl
RefSeq Acc Id: ENSMUST00000146734   ⟹   ENSMUSP00000118548
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4154,236,149 - 154,239,737 (+)Ensembl
GRCm38.p6 Ensembl4154,151,692 - 154,155,280 (+)Ensembl
RefSeq Acc Id: NM_021499   ⟹   NP_067474
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394154,226,829 - 154,241,275 (+)NCBI
GRCm384154,142,372 - 154,156,818 (+)NCBI
MGSCv374153,516,481 - 153,530,927 (+)RGD
Celera4156,426,565 - 156,440,737 (+)RGD
cM Map4 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_036164284   ⟹   XP_036020177
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394154,226,819 - 154,241,278 (+)NCBI
Sequence:
RefSeq Acc Id: XR_001784168
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394154,226,814 - 154,241,278 (+)NCBI
GRCm384154,142,358 - 154,156,821 (+)NCBI
Sequence:
RefSeq Acc Id: XR_003954989
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394154,226,811 - 154,241,278 (+)NCBI
GRCm384154,142,354 - 154,156,821 (+)NCBI
Sequence:
RefSeq Acc Id: XR_004941939
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394154,226,842 - 154,241,278 (+)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_067474   ⟸   NM_021499
- UniProtKB: Q8BQ21 (UniProtKB/Swiss-Prot),   Q9JM98 (UniProtKB/Swiss-Prot),   Q3T993 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000118548   ⟸   ENSMUST00000146734
RefSeq Acc Id: ENSMUSP00000030895   ⟸   ENSMUST00000030895
RefSeq Acc Id: XP_036020177   ⟸   XM_036164284
- Peptide Label: isoform X1

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9JM98-F1-model_v2 AlphaFold Q9JM98 1-462 view protein structure

Promoters
RGD ID:6836664
Promoter ID:MM_KWN:41077
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   Kidney,   Lung,   MEF_B4
Transcripts:ENSMUST00000105640,   NM_021499,   OTTMUST00000024511,   UC008WBJ.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv364153,515,601 - 153,516,572 (+)MPROMDB
RGD ID:6835147
Promoter ID:MM_KWN:41079
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_4Hour,   Brain,   Kidney,   Lung
Transcripts:UC008WBK.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv364153,528,861 - 153,529,412 (+)MPROMDB
RGD ID:6885720
Promoter ID:EPDNEW_M6311
Type:initiation region
Name:Wrap73_1
Description:Mus musculus WD repeat containing, antisense to Trp73 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm384154,142,409 - 154,142,469EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1891749 AgrOrtholog
Ensembl Genes ENSMUSG00000029029 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000030895 ENTREZGENE
  ENSMUST00000030895.12 UniProtKB/Swiss-Prot
  ENSMUST00000146734.2 UniProtKB/TrEMBL
Gene3D-CATH 2.130.10.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Quino_amine_DH_bsu UniProtKB/Swiss-Prot
  WD40/YVTN_repeat-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WD40_repeat UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WD40_repeat_dom_sf UniProtKB/TrEMBL
KEGG Report mmu:59002 UniProtKB/Swiss-Prot
MGD MGI:1891749 ENTREZGENE
NCBI Gene 59002 ENTREZGENE
PANTHER WD REPEAT PROTEIN 8-RELATED UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WD REPEAT-CONTAINING PROTEIN WRAP73 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam WD40 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Wrap73 PhenoGen
SMART WD40 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF50969 UniProtKB/Swiss-Prot
  WD40_like UniProtKB/TrEMBL
UniProt F6VR19_MOUSE UniProtKB/TrEMBL
  Q3T993 ENTREZGENE, UniProtKB/TrEMBL
  Q8BQ21 ENTREZGENE
  Q9JM98 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary Q8BQ21 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-02-06 Wrap73  WD repeat containing, antisense to Trp73  Wdr8  WD repeat domain 8  Symbol and/or name change 5135510 APPROVED