1700048O20Rik (RIKEN cDNA 1700048O20 gene) - Rat Genome Database
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Gene: 1700048O20Rik (RIKEN cDNA 1700048O20 gene) Mus musculus
Analyze
Symbol: 1700048O20Rik
Name: RIKEN cDNA 1700048O20 gene
RGD ID: 1620011
MGI Page MGI
Description:
Type: ncrna
RefSeq Status: VALIDATED
Also known as: 1700022O21Rik
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399121,766,341 - 121,776,082 (+)NCBIGRCm39mm39
GRCm389121,937,275 - 121,947,016 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9121,937,223 - 121,947,016 (+)EnsemblGRCm38mm10GRCm38
MGSCv379121,846,393 - 121,856,134 (+)NCBIGRCm37mm9NCBIm37
Celera9122,412,989 - 122,422,738 (+)NCBICelera
Cytogenetic Map9F4NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
1. RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:16141072   PMID:16141073  


Genomics


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
10412242Alpq8_malcohol preference QTL 8 (mouse)Not determined989284925123284925Mouse
1301649Psl1_mpromotion susceptibility QTL 1 (mouse)Not determined989412277123412396Mouse
18182932Metl3_mmetabolite locus 3, N-acetylglutamate (mouse)989563342123563342Mouse
12910770Splic1_mspleen iron content 1 (mouse)991413879124595110Mouse
12910772Lvic6_mliver iron content 6 (mouse)991413879124595110Mouse
12910773Splic3_mspleen iron content 3 (mouse)991413879124595110Mouse
1558767Skmw11_mskeletal muscle weight 11 (mouse)Not determined991641084124595110Mouse
13463474Hbbcq5_mhemoglobin concentration QTL 5 (mouse)991641084124595110Mouse
13463475Hctq7_mhematocrit QTL 7 (mouse)991641084124595110Mouse
13463477Rbc9_mred blood cell count 9 (mouse)991641084124595110Mouse
13463478Mchq18_mmean corpuscular hemoglobin QTL 18 (mouse)991641084124595110Mouse
13463480Mchcq2_mmean corpuscular hemoglobin concentration QTL 2 (mouse)991641084124595110Mouse
12904937Edlmmq9_mextensor digitorum longus muscle mass QTL 9 (mouse)991683173124595110Mouse
12904947Tammq7_mtibialis anterior muscle mass QTL 7 (mouse)991683173124595110Mouse
12904961Gmmq7_mgastrocnemius muscle mass QTL 7 (mouse)991683173124595110Mouse
1302001Bdln5_mbody length 5 (mouse)Not determined993762590124595110Mouse
1301484Bwq6_mbody weight (mouse)Not determined993762590124595110Mouse
14746992Manh67_mmandible shape 67 (mouse)994036768124595110Mouse
11537364Cnes5_mC. neoformans susceptibility locus 5 (mouse)996917590124595110Mouse
1301297Lcho1_mliver cholesterol 1 (mouse)Not determined9101060861124595110Mouse
1357627Tgq2_mtriglyceride QTL 2 (mouse)Not determined9102000187124595110Mouse
1357648Obq18_mobesity QTL 18 (mouse)Not determined9102000187124595110Mouse
1301789Pbwg4_mpostnatal body weight growth 4 (mouse)Not determined9103289445124595110Mouse
10412290Pvacm1l_mplasma vascular cell adhesion molecule 1 levels (mouse)Not determined9103289445124595110Mouse
12879896Berr3_mberghei resistance locus 3 (mouse)9103289445124595110Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:394
Count of miRNA genes:310
Interacting mature miRNAs:333
Transcripts:ENSMUST00000063103
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000063103
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9121,938,135 - 121,947,014 (+)Ensembl
RefSeq Acc Id: ENSMUST00000214777
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9121,937,223 - 121,947,016 (+)Ensembl
RefSeq Acc Id: ENSMUST00000215356
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9121,938,116 - 121,941,997 (+)Ensembl
RefSeq Acc Id: NR_033553
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399121,766,341 - 121,776,082 (+)NCBI
GRCm389121,937,275 - 121,947,016 (+)ENTREZGENE
MGSCv379121,846,393 - 121,856,134 (+)RGD
Celera9122,412,989 - 122,422,738 (+)RGD
cM Map9 ENTREZGENE
Sequence:
Protein Sequences
GenBank Protein BAE43194 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
Protein Domains
KRAB

Promoters
RGD ID:15093696
Promoter ID:EPDNEWNC_M1603
Type:initiation region
Name:1700048O20Rik_2
Description:RIKEN cDNA 1700048O20 gene [Source:MGISymbol;Acc:MGI:1920637]
SO ACC ID:SO:0000170
Source:EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm389121,937,251 - 121,937,311EPDNEWNC
RGD ID:8671286
Promoter ID:EPDNEW_M13673
Type:initiation region
Name:1700048O20Rik_1
Description:Mus musculus RIKEN cDNA 1700048O20 gene , long non-coding RNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm389121,937,295 - 121,937,355EPDNEW
RGD ID:15093695
Promoter ID:EPDNEWNC_M1604
Type:initiation region
Name:1700048O20Rik_1
Description:RIKEN cDNA 1700048O20 gene [Source:MGISymbol;Acc:MGI:1920637]
SO ACC ID:SO:0000170
Source:EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm389121,938,115 - 121,938,175EPDNEWNC

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000043773 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000214777 ENTREZGENE
InterPro KRAB_dom_sf UniProtKB/TrEMBL
  Krueppel-associated_box UniProtKB/TrEMBL
MGD MGI:1920637 ENTREZGENE
NCBI Gene 69430 ENTREZGENE
Pfam KRAB UniProtKB/TrEMBL
PhenoGen 1700048O20Rik PhenoGen
PROSITE KRAB UniProtKB/TrEMBL
RNAcentral URS000075E3F7 RNACentral
SMART KRAB UniProtKB/TrEMBL
Superfamily-SCOP Krueppel-associated_box UniProtKB/TrEMBL
UniProt Q3V488_MOUSE UniProtKB/TrEMBL