1600020E01Rik (RIKEN cDNA 1600020E01 gene) - Rat Genome Database
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Gene: 1600020E01Rik (RIKEN cDNA 1600020E01 gene) Mus musculus
Analyze
Symbol: 1600020E01Rik
Name: RIKEN cDNA 1600020E01 gene
RGD ID: 1619989
MGI Page MGI
Description:
Type: ncrna
RefSeq Status: VALIDATED
Also known as: hypothetical protein LOC72012
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39686,504,312 - 86,541,431 (+)NCBIGRCm39mm39
GRCm39 Ensembl686,503,229 - 86,559,448 (+)Ensembl
GRCm38686,527,330 - 86,564,449 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl686,526,247 - 86,582,466 (+)EnsemblGRCm38mm10GRCm38
MGSCv37686,477,324 - 86,514,443 (+)NCBIGRCm37mm9NCBIm37
MGSCv36686,601,356 - 86,639,529 (+)NCBImm8
Celera688,465,291 - 88,501,823 (+)NCBICelera
Cytogenetic Map6D1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10512203   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:14610273   PMID:15840001   PMID:16141072  
PMID:16141073   PMID:17967808   PMID:18799693   PMID:28106071  


Genomics

Position Markers
PCBP1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38687,512,845 - 87,512,966UniSTSGRCm38
GRCm38686,524,562 - 86,524,684UniSTSGRCm38
MGSCv37687,462,839 - 87,462,960UniSTSGRCm37
MGSCv37686,474,556 - 86,474,678UniSTSGRCm37
Celera688,462,524 - 88,462,646UniSTS
Celera689,448,029 - 89,448,150UniSTS
Cytogenetic Map6D1UniSTS
A006T05  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38687,513,135 - 87,513,294UniSTSGRCm38
GRCm38686,525,032 - 86,525,191UniSTSGRCm38
MGSCv37687,463,129 - 87,463,288UniSTSGRCm37
MGSCv37686,475,026 - 86,475,185UniSTSGRCm37
Celera688,462,994 - 88,463,153UniSTS
Celera689,448,319 - 89,448,478UniSTS
Cytogenetic Map6D1UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301876Bits2_mbitterness sensitivity 2 (mouse)Not determined670425898104426034Mouse
10412195Efw_mepididymal fat weight (mouse)Not determined67554435694225955Mouse
10043864T2dm4sa_mtype 2 diabetes mellitus 4 in SMXA RI mice (mouse)Not determined683713869147052561Mouse
1301813Skl3_mskeletal size (tail length) 3 (mouse)Not determined670425898104426034Mouse
1300954Fcsa1_mfemoral cross-sectional area 1 (mouse)Not determined671981024105981170Mouse
1558984Cplaq9_mcircadian period of locomotor activity 9 (mouse)Not determined63866962592607450Mouse
13824985Alh1_mamplitude of lateral head displacement 1 (mouse)67800000097000000Mouse
1301571Arrd1_mage-related retinal degeneration 1 (mouse)Not determined67554435692607450Mouse
25440480Moaq2_mmodifier of alien QTL 2 (mouse)61117500000Mouse
10043972Obq28_mobesity QTL 28 (mouse)Not determined65854043392540433Mouse
10412208Cypr4_mcytokine production 4 (mouse)Not determined675716503109716697Mouse
25314319Histh6_mhistamine hypersensitivity 6 (mouse)648720000125360000Mouse
4142361W10q11_mweight 10 weeks QTL 11 (mouse)Not determined450382396656149Mouse
13506930Recrq9_mrecombination rate in male meiosis QTL 9 (mouse)673500000134700000Mouse
4142271Egq8_mearly growth QTL 8 (mouse)Not determined450382396656149Mouse
1301369Im4_mimmunoregulatory 4 (mouse)Not determined66348473897484905Mouse
1300618Pgia19_mproteoglycan induced arthritis 19 (mouse)Not determined64531405987426034Mouse
1300650Bw18_mbody weight QTL 18 (mouse)Not determined666713869100714031Mouse
14697704Stsl4_mSalmonella typhimurium susceptibility locus 4 (mouse)67710000090000000Mouse
1302020Bbaa20_mB.burgdorferi-associated arthritis 20 (mouse)Not determined67132262193464093Mouse
1301740Bwq2_mbody weight QTL 2 (mouse)Not determined66005768094057799Mouse
15039373Adip28_madiposity 28 (mouse)65630821190308211Mouse
15039375Bw41_mbody weight QTL 41 (mouse)65630821190308211Mouse
1357683Igf1sl1_mIGF-1 serum levels 1 (mouse)Not determined652161713116155267Mouse
4142259Tabw2_mtally ho associated body weight 2 (mouse)Not determined46935985136423692Mouse
1301320Ots1_movarian teratoma susceptibility 1 (mouse)Not determined675447583104503555Mouse
4141028Mclr_mmethylcholanthrene lymphoma resistance (mouse)Not determined5437342788379171Mouse
1301034Egrm2_mearly growth rate (mouse)Not determined670425898104426034Mouse
1300869Stheal5_msoft tissue heal 5 (mouse)Not determined671575060105575178Mouse
4142232W6q4_mweight 6 weeks QTL 4 (mouse)Not determined450382396656149Mouse
1300674Nidd3n_mnon-insulin-dependent diabetes mellitus 3 in NSY (mouse)Not determined67554435694225955Mouse
4141376Dbm1_mdiabetes modifier 1 (mouse)Not determined678629504121115387Mouse
14696731Pairq1_mP. aeruginosa infection resistance QTL 1 (mouse)681500000102200000Mouse
26884414Bzwq12_mbi-zygomatic width QTL 12, 16 week (mouse)63400000139100000Mouse
10043901Pfat5_mpredicted fat percentage 5 (mouse)Not determined675607306109607450Mouse
1300556Cia6_mcollagen induced arthritis QTL 6 (mouse)Not determined6446488487426034Mouse
1558977Skmw10_mskeletal muscle weight 10 (mouse)Not determined65844758392447710Mouse
11251720Ewc4_methanol withdrawal and consumption 4 (mouse)684122513118122513Mouse
4142126W3q3_mweight 3 weeks QTL 3 (mouse)Not determined450382396656149Mouse
1301521Pas1c_mpulmonary adenoma susceptibility 1c (mouse)Not determined671981024105981170Mouse
25314320Histh5_mhistamine hypersensitivity 5 (mouse)648720000148450000Mouse
10412157Fl1n_mfatty liver 1 in NSY (mouse)Not determined645314059128835032Mouse
1301962Eila2_methanol induced locomotor activity 2 (mouse)Not determined648726556125356785Mouse
1357875Pfat2_mpredicted fat percentage 2 (mouse)Not determined676463949110464093Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:230
Count of miRNA genes:86
Interacting mature miRNAs:86
Transcripts:ENSMUST00000180896, ENSMUST00000181928
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000180896
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl686,526,271 - 86,564,449 (+)Ensembl
RefSeq Acc Id: ENSMUST00000181928
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl686,527,401 - 86,564,448 (+)Ensembl
RefSeq Acc Id: ENSMUST00000204008
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl686,526,247 - 86,564,449 (+)Ensembl
RefSeq Acc Id: ENSMUST00000204047
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl686,527,319 - 86,564,449 (+)Ensembl
RefSeq Acc Id: ENSMUST00000204068
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl686,526,247 - 86,551,042 (+)Ensembl
RefSeq Acc Id: ENSMUST00000204663
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl686,547,981 - 86,582,466 (+)Ensembl
RefSeq Acc Id: ENSMUST00000204738
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl686,526,810 - 86,582,036 (+)Ensembl
RefSeq Acc Id: ENSMUST00000205028
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl686,527,474 - 86,563,505 (+)Ensembl
RefSeq Acc Id: NR_037960
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39686,504,312 - 86,541,431 (+)NCBI
GRCm38686,527,330 - 86,564,449 (+)ENTREZGENE
Celera688,465,291 - 88,501,823 (+)ENTREZGENE
cM Map6 ENTREZGENE
Sequence:
RefSeq Acc Id: NR_037961
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39686,504,383 - 86,541,431 (+)NCBI
GRCm38686,527,401 - 86,564,449 (+)NCBI
Celera688,465,291 - 88,501,823 (+)ENTREZGENE
cM Map6 ENTREZGENE
Sequence:
Promoters
RGD ID:15093107
Promoter ID:EPDNEWNC_M1017
Type:multiple initiation site
Name:1600020E01Rik_2
Description:RIKEN cDNA 1600020E01 gene [Source:MGISymbol;Acc:MGI:1919262]
SO ACC ID:SO:0000170
Source:EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38686,526,763 - 86,526,823EPDNEWNC
RGD ID:6890294
Promoter ID:EPDNEW_M8598
Type:single initiation site
Name:1600020E01Rik_1
Description:Mus musculus RIKEN cDNA 1600020E01 gene , transcript variant1, long non-coding RNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38686,527,319 - 86,527,379EPDNEW
RGD ID:15093106
Promoter ID:EPDNEWNC_M1018
Type:single initiation site
Name:1600020E01Rik_1
Description:RIKEN cDNA 1600020E01 gene [Source:MGISymbol;Acc:MGI:1919262]
SO ACC ID:SO:0000170
Source:EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38686,527,319 - 86,527,379EPDNEWNC

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000097048 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000181928 ENTREZGENE
  ENSMUST00000204047 ENTREZGENE
MGD MGI:1919262 ENTREZGENE
NCBI Gene 72012 ENTREZGENE
PhenoGen 1600020E01Rik PhenoGen
RNAcentral URS000075D434 RNACentral
  URS000075ED61 RNACentral