Rpl26-ps2 (ribosomal protein L26, pseudogene 2) - Rat Genome Database

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Gene: Rpl26-ps2 (ribosomal protein L26, pseudogene 2) Mus musculus
Analyze
Symbol: Rpl26-ps2
Name: ribosomal protein L26, pseudogene 2
RGD ID: 1619868
MGI Page MGI
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: EG217600; Gm4805
Related Functional Gene: Rpl26  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391257,679,324 - 57,679,836 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1257,679,367 - 57,679,801 (-)EnsemblGRCm39 Ensembl
GRCm381257,632,538 - 57,633,050 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1257,632,581 - 57,633,015 (-)EnsemblGRCm38mm10GRCm38
MGSCv371258,733,525 - 58,734,037 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361258,550,538 - 58,551,027 (-)NCBIMGSCv36mm8
Celera1258,813,136 - 58,813,648 (-)NCBICelera
Cytogenetic Map12C1NCBI
cM Map1224.7NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:20003482  


Genomics

Variants

.
Variants in Rpl26-ps2
19 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:142
Count of miRNA genes:137
Interacting mature miRNAs:142
Transcripts:ENSMUST00000085379
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4142234Tmc1m3_mTmc1 modifier 3 (mouse)Not determined12541844077031203Mouse
27226753Femd7_mfemur midshaft diameter 7, 10 week (mouse)12955000084146774Mouse
13207568Tcq14_mtotal cholesterol QTL 14 (mouse)121166000197176774Mouse
1558978Cplaq10_mcircadian period of locomotor activity 10 (mouse)Not determined121534102679040364Mouse
1301574Lmblgq5_mlimb length QTL 5 (mouse)Not determined121759644780956883Mouse
1301989Hdlq18_mHDL QTL 18 (mouse)Not determined122916068563160884Mouse
1300636Gct2_mgranulosa cell tumorigenesis 2 (mouse)Not determined122916068563160884Mouse
4141843Moen3_mmodifier of engrailed QTL 3 (mouse)Not determined122980158463801733Mouse
14747008Mancz10_mmandible centroid size 10 (mouse)122986352263863522Mouse
10402492Dipa8_mdrug induced psychomotor activation 8 (mouse)Not determined123493387268934019Mouse
1300818Bbaa10_mB.burgdorferi-associated arthritis 10 (mouse)Not determined123509100465511019Mouse
4142002Tbqt3_mtibia bone quality traits 3 (mouse)Not determined1235285496109936243Mouse
1357479Splwt1_mspleen weight 1 (mouse)Not determined124169317590887526Mouse
1357757Lnopy2_mlens opacity 2 (mouse)Not determined125284662686846796Mouse
1357749Vtbt13_mvertebral trabecular bone trait 13 (mouse)Not determined125313200287132145Mouse
12832727Ahrq1_mairway hyperresponsiveness QTL 1 (mouse)125469591082665939Mouse
12903999Opfaq8_mopen field activity QTL 8 (mouse)125490765357870585Mouse
13504832Bacszq2_mbaculum size QTL 2 (mouse)125694579875345787Mouse


Expression


Sequence


RefSeq Acc Id: ENSMUST00000085379
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1257,679,367 - 57,679,801 (-)Ensembl
GRCm38.p6 Ensembl1257,632,581 - 57,633,015 (-)Ensembl
Protein Sequences
GenBank Protein EDL36698 (Get FASTA)   NCBI Sequence Viewer  


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000066489 Ensembl, ENTREZGENE
MGD MGI:3648782 ENTREZGENE
NCBI Gene 217600 ENTREZGENE
PhenoGen Rpl26-ps2 PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2011-07-27 Rpl26-ps2  ribosomal protein L26, pseudogene 2  Gm4805  predicted gene 4805  Symbol and/or name change 5135510 APPROVED