Zfp408 (zinc finger protein 408) - Rat Genome Database

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Gene: Zfp408 (zinc finger protein 408) Mus musculus
Analyze
Symbol: Zfp408
Name: zinc finger protein 408
RGD ID: 1619685
MGI Page MGI
Description: Predicted to enable DNA-binding transcription factor activity; RNA polymerase II cis-regulatory region sequence-specific DNA binding activity; and identical protein binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Is expressed in cerebral cortex ventricular layer and cortical plate. Human ortholog(s) of this gene implicated in exudative vitreoretinopathy 6 and retinitis pigmentosa 72. Orthologous to human ZNF408 (zinc finger protein 408).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: Gm1011; RP23-176N9.6
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39291,473,101 - 91,480,372 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl291,474,014 - 91,480,136 (-)EnsemblGRCm39 Ensembl
GRCm38291,642,756 - 91,650,051 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl291,643,669 - 91,649,791 (-)EnsemblGRCm38mm10GRCm38
MGSCv37291,483,845 - 91,489,948 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36291,444,509 - 91,450,630 (-)NCBIMGSCv36mm8
Celera293,033,201 - 93,039,338 (-)NCBICelera
Cytogenetic Map2E1NCBI
cM Map250.63NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleus  (ISO)

References

References - curated
# Reference Title Reference Citation
1. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:14610273   PMID:15782199   PMID:16141072   PMID:16141073   PMID:18799693  
PMID:21267068   PMID:21677750   PMID:21873635   PMID:27626380   PMID:30973865   PMID:34321999   PMID:38355793  


Genomics

Comparative Map Data
Zfp408
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39291,473,101 - 91,480,372 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl291,474,014 - 91,480,136 (-)EnsemblGRCm39 Ensembl
GRCm38291,642,756 - 91,650,051 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl291,643,669 - 91,649,791 (-)EnsemblGRCm38mm10GRCm38
MGSCv37291,483,845 - 91,489,948 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36291,444,509 - 91,450,630 (-)NCBIMGSCv36mm8
Celera293,033,201 - 93,039,338 (-)NCBICelera
Cytogenetic Map2E1NCBI
cM Map250.63NCBI
ZNF408
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381146,701,031 - 46,705,912 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1146,701,030 - 46,705,912 (+)EnsemblGRCh38hg38GRCh38
GRCh371146,722,581 - 46,727,462 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361146,678,944 - 46,684,037 (+)NCBINCBI36Build 36hg18NCBI36
Build 341146,678,943 - 46,684,037NCBI
Celera1146,870,748 - 46,875,897 (+)NCBICelera
Cytogenetic Map11p11.2NCBI
HuRef1146,428,356 - 46,433,505 (+)NCBIHuRef
CHM1_11146,720,727 - 46,725,876 (+)NCBICHM1_1
T2T-CHM13v2.01146,857,047 - 46,861,916 (+)NCBIT2T-CHM13v2.0
Znf408
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8398,071,210 - 98,077,075 (-)NCBIGRCr8
mRatBN7.2377,615,595 - 77,621,325 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl377,616,808 - 77,621,055 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0380,549,102 - 80,555,186 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0387,248,337 - 87,253,997 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4376,025,925 - 76,029,792 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera376,820,747 - 76,826,831 (-)NCBICelera
Cytogenetic Map3q24NCBI
Znf408
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554221,373,694 - 1,377,688 (-)NCBIChiLan1.0ChiLan1.0
ZNF408
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2948,906,001 - 48,911,189 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11148,925,805 - 48,930,960 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01146,651,421 - 46,656,514 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11147,209,922 - 47,215,070 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1147,209,922 - 47,215,070 (+)Ensemblpanpan1.1panPan2
ZNF408
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11842,808,820 - 42,813,422 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1842,808,874 - 42,813,276 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1841,537,548 - 41,542,223 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01843,464,083 - 43,469,596 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1843,464,932 - 43,469,385 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11842,949,121 - 42,954,632 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01842,505,620 - 42,510,240 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01843,234,035 - 43,239,549 (-)NCBIUU_Cfam_GSD_1.0
Znf408
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494720,283,174 - 20,289,249 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365622,393,751 - 2,400,650 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365622,394,368 - 2,400,924 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZNF408
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl215,826,654 - 15,834,246 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1215,829,489 - 15,834,549 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2217,180,517 - 17,185,354 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Znf408
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247671,900,429 - 1,905,612 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Zfp408
454 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:1377
Count of miRNA genes:618
Interacting mature miRNAs:724
Transcripts:ENSMUST00000099714, ENSMUST00000111333, ENSMUST00000127702, ENSMUST00000145582, ENSMUST00000152769, ENSMUST00000155045
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
13824983Vclq1_mcurvilinear velocity QTL 1 (mouse)261830344136841920Mouse
4141236Hbnr5_mHeligmosomoides bakeri nematode resistance 5 (mouse)Not determined31214567105143570Mouse
1302174Dssc2_mdextran sodium sulfate induced colitis QTL2 (mouse)Not determined224224632148700377Mouse
1301405Etohr_methanol response acute (mouse)Not determined26300595497006113Mouse
1301660Iba1_minduction of brown adipocytes 1 (mouse)Not determined267647887101648142Mouse
1558915W3q1_mweight 3 weeks QTL 1 (mouse)Not determined220897778118894840Mouse
11532731Sluc31a_msusceptibility to lung cancer 31a (mouse)288015003122015170Mouse
1301769Orgwq2_morgan weight QTL 2 (mouse)Not determined2388712693421651Mouse
1357454Kidq1_mkidney weight QTL 1 (mouse)Not determined220897778118894840Mouse
1357577Trmq3_mT cell ratio modifier QTL 3 (mouse)Not determined260520612119355518Mouse
1558966W10q9_mweight 10 weeks QTL 9 (mouse)Not determined220897778118894840Mouse
4141854T2dm2sa_mtype 2 diabetes mellitus 2 in SMXA RI mice (mouse)Not determined229307947148374934Mouse
1300662Etohila_methanol induced locomotor activity (mouse)Not determined26300595497006113Mouse
10053681Lith24_mlithogenic gene 24 (mouse)Not determined26300595497006113Mouse
1301048Actre2_mactivity response to ethanol 2 (mouse)Not determined26300595497006113Mouse
10412082Hylaq1_mHyperlocomotor activity related QTL 1 (mouse)Not determined284013198148667470Mouse
1357881Estoq1_membryo survival total QTL 1 (mouse)Not determined220897778118894840Mouse
5491197Mobq5_mmultigenic obesity QTL 5 (mouse)Not determined265269746162518926Mouse
1301948Elsgp3_melevated serum gp70 3 (mouse)Not determined268724269102724407Mouse
5491196Mobq6_mmultigenic obesity QTL 6 (mouse)Not determined285724269180896594Mouse
15092054Egrme5_mearly growth rate, maternal effect 5 (mouse)282190187118004745Mouse
4142223Femwf4_mfemur work to failure 4 (mouse)Not determined88143423122143570Mouse
4142088Parms1_mpatched associated RMS 1 (mouse)Not determined74524117114123532Mouse
12738429Lfibq18_mliver fibrosis QTL 18 (mouse)25791999191919991Mouse
11038697Ltpr2d_mLeishmania tropica response 2d (mouse)286095716120095823Mouse
11038698Ltpr2c_mLeishmania tropica response 2c (mouse)286095716120095823Mouse
39128209Lwq14_mliver weight QTL 14 (mouse)220897778118894840Mouse
1558738W6q1_mweight 6 weeks QTL 1 (mouse)Not determined220897778118894840Mouse
11528549Sluc31_msusceptibility to lung cancer 31 (mouse)274524117129213005Mouse
1301703Bomd3_mbone mineral density 3 (mouse)Not determined26300595497006113Mouse
1301834Bits1_mbitterness sensitivity 1 (mouse)Not determined287440643121440778Mouse
4141155Plast2b_mplasma plant sterol 2b (mouse)Not determined284013198148522175Mouse
4141406Alpq2_malcohol preference QTL 2 (mouse)Not determined25752411791524288Mouse
1301873Hsl1_mhyperoxia susceptibility locus 1 (mouse)Not determined26357015497570301Mouse
1558901Skmw8_mskeletal muscle weight 8 (mouse)Not determined284008488118008593Mouse
1558899Egq1_mearly growth QTL 1 (mouse)Not determined220897778118894840Mouse
1357681Hrtq1_mheart weight QTL 1 (mouse)Not determined220897778118894840Mouse
1301109Dntcs2_mdental caries susceptibility 2 (mouse)Not determined240885493114910165Mouse
4141657Mohg1_mmodifier of hg 1 (mouse)Not determined276678758103095823Mouse
1300852Lmr14_mleishmaniasis resistance 14 (mouse)Not determined286095716120095823Mouse
1357436Splq1_mspleen weight QTL 1 (mouse)Not determined220897778118894840Mouse
1301882Etohc2_methanol consumption 2 (mouse)Not determined268724269102724407Mouse
1301374Cplaq7_mcircadian period of locomotor activity 7 (mouse)Not determined276421483110421651Mouse
10043894Bw22_mbody weight QTL 22 (mouse)Not determined280895334114895334Mouse
1301344Lith1_mlithogenic gene 1 (mouse)Not determined245347635145312647Mouse
11049565Lmr28g_mleishmaniasis resistance 28g (mouse)286095716120095823Mouse
13463482Mchq17_mmean corpuscular hemoglobin QTL 17 (mouse)267647887101648142Mouse
1301098Cd8mts3_mCD8 memory T cell subset 3 (mouse)Not determined291089974125090104Mouse
10044002Hdl7_mHDL level 7 (mouse)Not determined26300595497006113Mouse


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001033451 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001347175 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001410208 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001410209 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001410210 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001410211 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001410212 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001410213 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001410214 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001410215 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001410216 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001410217 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001410218 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AK132515 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK134439 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK161736 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK192780 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL691489 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC145603 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC145604 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BF459039 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000099714   ⟹   ENSMUSP00000097301
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl291,474,014 - 91,480,124 (-)Ensembl
GRCm38.p6 Ensembl291,643,669 - 91,649,779 (-)Ensembl
Ensembl Acc Id: ENSMUST00000111333   ⟹   ENSMUSP00000106965
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl291,474,033 - 91,480,136 (-)Ensembl
GRCm38.p6 Ensembl291,643,688 - 91,649,791 (-)Ensembl
Ensembl Acc Id: ENSMUST00000127702
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl291,478,361 - 91,480,088 (-)Ensembl
GRCm38.p6 Ensembl291,648,016 - 91,649,743 (-)Ensembl
Ensembl Acc Id: ENSMUST00000145582   ⟹   ENSMUSP00000119082
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl291,478,013 - 91,480,104 (-)Ensembl
GRCm38.p6 Ensembl291,647,668 - 91,649,759 (-)Ensembl
Ensembl Acc Id: ENSMUST00000152769
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl291,479,281 - 91,480,105 (-)Ensembl
GRCm38.p6 Ensembl291,648,936 - 91,649,760 (-)Ensembl
Ensembl Acc Id: ENSMUST00000155045
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl291,476,623 - 91,478,580 (-)Ensembl
GRCm38.p6 Ensembl291,646,278 - 91,648,235 (-)Ensembl
RefSeq Acc Id: NM_001033451   ⟹   NP_001028623
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39291,473,101 - 91,480,120 (-)NCBI
GRCm38291,643,675 - 91,649,791 (-)NCBI
MGSCv37291,483,845 - 91,489,948 (-)RGD
Celera293,033,201 - 93,039,338 (-)RGD
cM Map2 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001347175   ⟹   NP_001334104
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39291,473,101 - 91,480,120 (-)NCBI
GRCm38291,643,675 - 91,649,791 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001410208   ⟹   NP_001397137
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39291,473,101 - 91,480,372 (-)NCBI
RefSeq Acc Id: NM_001410209   ⟹   NP_001397138
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39291,473,101 - 91,480,120 (-)NCBI
RefSeq Acc Id: NM_001410210   ⟹   NP_001397139
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39291,473,101 - 91,480,372 (-)NCBI
RefSeq Acc Id: NM_001410211   ⟹   NP_001397140
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39291,473,101 - 91,480,120 (-)NCBI
RefSeq Acc Id: NM_001410212   ⟹   NP_001397141
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39291,473,101 - 91,480,120 (-)NCBI
RefSeq Acc Id: NM_001410213   ⟹   NP_001397142
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39291,473,101 - 91,480,120 (-)NCBI
RefSeq Acc Id: NM_001410214   ⟹   NP_001397143
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39291,473,101 - 91,480,120 (-)NCBI
RefSeq Acc Id: NM_001410215   ⟹   NP_001397144
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39291,473,101 - 91,480,120 (-)NCBI
RefSeq Acc Id: NM_001410216   ⟹   NP_001397145
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39291,473,101 - 91,480,120 (-)NCBI
RefSeq Acc Id: NM_001410217   ⟹   NP_001397146
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39291,473,101 - 91,480,120 (-)NCBI
RefSeq Acc Id: NM_001410218   ⟹   NP_001397147
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39291,473,101 - 91,480,120 (-)NCBI
RefSeq Acc Id: NP_001028623   ⟸   NM_001033451
- Peptide Label: isoform 2
- UniProtKB: Q3V1D8 (UniProtKB/TrEMBL),   B7ZP32 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001334104   ⟸   NM_001347175
- Peptide Label: isoform 1
- UniProtKB: H7BX78 (UniProtKB/TrEMBL),   B7ZP32 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSMUSP00000106965   ⟸   ENSMUST00000111333
Ensembl Acc Id: ENSMUSP00000119082   ⟸   ENSMUST00000145582
Ensembl Acc Id: ENSMUSP00000097301   ⟸   ENSMUST00000099714
RefSeq Acc Id: NP_001397137   ⟸   NM_001410208
- Peptide Label: isoform 2
- UniProtKB: Q3V1D8 (UniProtKB/TrEMBL),   B7ZP32 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001397139   ⟸   NM_001410210
- Peptide Label: isoform 3
- UniProtKB: Q3UYR8 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001397146   ⟸   NM_001410217
- Peptide Label: isoform 4
- UniProtKB: B7ZP32 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001397142   ⟸   NM_001410213
- Peptide Label: isoform 3
- UniProtKB: Q3UYR8 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001397138   ⟸   NM_001410209
- Peptide Label: isoform 2
- UniProtKB: Q3V1D8 (UniProtKB/TrEMBL),   B7ZP32 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001397144   ⟸   NM_001410215
- Peptide Label: isoform 3
- UniProtKB: Q3UYR8 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001397147   ⟸   NM_001410218
- Peptide Label: isoform 5
- UniProtKB: B7ZP32 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001397143   ⟸   NM_001410214
- Peptide Label: isoform 3
- UniProtKB: Q3UYR8 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001397141   ⟸   NM_001410212
- Peptide Label: isoform 3
- UniProtKB: Q3UYR8 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001397140   ⟸   NM_001410211
- Peptide Label: isoform 3
- UniProtKB: Q3UYR8 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001397145   ⟸   NM_001410216
- Peptide Label: isoform 3
- UniProtKB: Q3UYR8 (UniProtKB/TrEMBL)
Protein Domains
C2H2-type

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-H7BX78-F1-model_v2 AlphaFold H7BX78 1-710 view protein structure

Promoters
RGD ID:6833130
Promoter ID:MM_KWN:30491
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6
Transcripts:ENSMUST00000111329,   NM_001033451,   NR_027371,   NR_027373,   OTTMUST00000033705,   OTTMUST00000033706,   OTTMUST00000033707,   OTTMUST00000078471,   OTTMUST00000078473,   UC008KWL.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36291,489,886 - 91,490,487 (-)MPROMDB
RGD ID:6877928
Promoter ID:EPDNEW_M2415
Type:multiple initiation site
Name:Zfp408_1
Description:Mus musculus zinc finger protein 408 , transcript variant 2,mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38291,649,775 - 91,649,835EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2685857 AgrOrtholog
Ensembl Genes ENSMUSG00000075040 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000099714 ENTREZGENE
  ENSMUST00000099714.10 UniProtKB/TrEMBL
  ENSMUST00000111333 ENTREZGENE
  ENSMUST00000111333.2 UniProtKB/TrEMBL
  ENSMUST00000145582.8 UniProtKB/TrEMBL
Gene3D-CATH 2.170.270.10 UniProtKB/TrEMBL
  Classic Zinc Finger UniProtKB/TrEMBL
InterPro Krueppel_C2H2_ZnFinger UniProtKB/TrEMBL
  SET_dom_sf UniProtKB/TrEMBL
  Znf_C2H2/integrase_DNA-bd UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/TrEMBL
KEGG Report mmu:381410 UniProtKB/TrEMBL
MGD MGI:2685857 ENTREZGENE
NCBI Gene 381410 ENTREZGENE
PANTHER C2H2-TYPE DOMAIN-CONTAINING PROTEIN UniProtKB/TrEMBL
  IP01015P-RELATED UniProtKB/TrEMBL
  ZINC FINGER AND BTB DOMAIN-CONTAINING UniProtKB/TrEMBL
Pfam zf-C2H2 UniProtKB/TrEMBL
  zf-C2H2_6 UniProtKB/TrEMBL
PhenoGen Zfp408 PhenoGen
PROSITE ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
SMART ZnF_C2H2 UniProtKB/TrEMBL
Superfamily-SCOP SSF57667 UniProtKB/TrEMBL
UniProt B7ZP32 ENTREZGENE, UniProtKB/TrEMBL
  D6RCZ0_MOUSE UniProtKB/TrEMBL
  H7BX78 ENTREZGENE, UniProtKB/TrEMBL
  Q3UYR8 ENTREZGENE, UniProtKB/TrEMBL
  Q3V1D8 ENTREZGENE, UniProtKB/TrEMBL