Zeb2os (zinc finger E-box binding homeobox 2, opposite strand) - Rat Genome Database

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Gene: Zeb2os (zinc finger E-box binding homeobox 2, opposite strand) Mus musculus
Analyze
Symbol: Zeb2os
Name: zinc finger E-box binding homeobox 2, opposite strand
RGD ID: 1619643
MGI Page MGI
Description: ASSOCIATED WITH congestive heart failure (ortholog); Mowat-Wilson syndrome (ortholog); INTERACTS WITH silver atom; silver(0); titanium dioxide
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: VALIDATED
Previously known as: Gm13476; hypothetical protein LOC433424; uncharacterized protein LOC433424; Zeb2nat
RGD Orthologs
Human
Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39245,001,150 - 45,004,099 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl245,000,719 - 45,004,099 (+)EnsemblGRCm39 Ensembl
GRCm38245,111,138 - 45,114,087 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl245,110,707 - 45,114,087 (+)EnsemblGRCm38mm10GRCm38
MGSCv37244,966,658 - 44,969,607 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36245,118,455 - 45,121,392 (+)NCBIMGSCv36mm8
Celera246,823,642 - 46,826,761 (+)NCBICelera
Cytogenetic Map2BNCBI
cM Map227.31NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
Additional References at PubMed
PMID:12040188   PMID:12477932   PMID:13679026   PMID:18347095   PMID:24316575  


Genomics

Comparative Map Data
Zeb2os
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39245,001,150 - 45,004,099 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl245,000,719 - 45,004,099 (+)EnsemblGRCm39 Ensembl
GRCm38245,111,138 - 45,114,087 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl245,110,707 - 45,114,087 (+)EnsemblGRCm38mm10GRCm38
MGSCv37244,966,658 - 44,969,607 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36245,118,455 - 45,121,392 (+)NCBIMGSCv36mm8
Celera246,823,642 - 46,826,761 (+)NCBICelera
Cytogenetic Map2BNCBI
cM Map227.31NCBI
ZEB2-AS1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382144,519,614 - 144,520,899 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2144,517,978 - 144,521,477 (+)EnsemblGRCh38hg38GRCh38
GRCh372145,277,181 - 145,278,466 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map2q22.3NCBI
HuRef2137,269,510 - 137,270,795 (+)NCBIHuRef
CHM1_12145,282,271 - 145,283,544 (+)NCBICHM1_1
T2T-CHM13v2.02144,967,621 - 144,968,908 (+)NCBIT2T-CHM13v2.0
Zeb2-as1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8349,752,502 - 49,755,379 (+)NCBIGRCr8
mRatBN7.2329,343,078 - 29,345,943 (+)NCBImRatBN7.2mRatBN7.2
UTH_Rnor_SHR_Utx332,736,269 - 32,739,157 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0341,321,315 - 41,324,197 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0339,140,022 - 39,142,911 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0329,994,753 - 29,997,626 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Celera327,648,976 - 27,651,786 (+)NCBICelera
Cytogenetic Map3q12NCBI

Variants

.
Variants in Zeb2os
67 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:100
Count of miRNA genes:50
Interacting mature miRNAs:50
Transcripts:ENSMUST00000127150, ENSMUST00000130827
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301769Orgwq2_morgan weight QTL 2 (mouse)Not determined2388712693421651Mouse
8552707Cia23_mcollagen induced arthritis QTL 23 (mouse)Not determined21212953766556453Mouse
1301641Sbmd2_mspinal bone mineral density 2 (mouse)Not determined21421456748214713Mouse
1357881Estoq1_membryo survival total QTL 1 (mouse)Not determined220897778118894840Mouse
1357454Kidq1_mkidney weight QTL 1 (mouse)Not determined220897778118894840Mouse
1357436Splq1_mspleen weight QTL 1 (mouse)Not determined220897778118894840Mouse
39128209Lwq14_mliver weight QTL 14 (mouse)220897778118894840Mouse
1558899Egq1_mearly growth QTL 1 (mouse)Not determined220897778118894840Mouse
1558966W10q9_mweight 10 weeks QTL 9 (mouse)Not determined220897778118894840Mouse
1558915W3q1_mweight 3 weeks QTL 1 (mouse)Not determined220897778118894840Mouse
1558738W6q1_mweight 6 weeks QTL 1 (mouse)Not determined220897778118894840Mouse
1357681Hrtq1_mheart weight QTL 1 (mouse)Not determined220897778118894840Mouse
1301376Etohc1_methanol consumption 1 (mouse)Not determined22112972555129871Mouse
4141708Pbwg1.2_mpostnatal body weight growth 1.2 (mouse)Not determined2112972555129871Mouse
13463470Tubisq1_mtubulointerstitial injury severity, QTL 1 (mouse)22368914557689269Mouse
1302174Dssc2_mdextran sodium sulfate induced colitis QTL2 (mouse)Not determined224224632148700377Mouse
26884438Sklq12_mskull length QTL 12, 16 week (mouse)22459001254890012Mouse
12792980Fbmd1_mfemoral bone mineral density 1, females only (mouse)22503449245034492Mouse
4142130Pgis2_mproteoglycan induced spondylitis 2 (mouse)Not determined22530805156971811Mouse
12904005Cfq2_mconditioned fear QTL 2 (mouse)22702264256396228Mouse
1300577Capsq1_mcapsaicin sensitivity related QTL 1 (mouse)Not determined22760206084013384Mouse
14746979Manh51_mmandible shape 51 (mouse)22896112962961129Mouse
14746997Mancz2_mmandible centroid size 2 (mouse)22896112962961129Mouse
4141854T2dm2sa_mtype 2 diabetes mellitus 2 in SMXA RI mice (mouse)Not determined229307947148374934Mouse
4141236Hbnr5_mHeligmosomoides bakeri nematode resistance 5 (mouse)Not determined31214567105143570Mouse
13464253Ifvrq1_minfluenza virus resistance QTL 1 (mouse)23303449252034492Mouse
4142447Pbwg1.7_mpostnatal body weight growth 1.7 (mouse)Not determined3579732469797406Mouse
4141186Pbwg1.8_mpostnatal body weight growth 1.8 (mouse)Not determined3579732469797406Mouse
4142133Pbwg1.6_mpostnatal body weight growth 1.6 (mouse)Not determined3579732469797406Mouse
1559001Eae33_mexperimental allergic encephalomyelitis susceptibility 33 (mouse)Not determined23599167971609412Mouse
10449151Hdl8_mhigh density lipoprotein (HDL) level 8 (mouse)23812972567072607Mouse
10449150Pvldlc1_mplasma VLDL-cholesterol 1 (mouse)23812972567072607Mouse
10449145Lanq1_mlanosterol level QTL 1 (mouse)23812972567072607Mouse
11038703Ltpr1_mLeishmania tropica response 1 (mouse)23997166573971811Mouse
1301109Dntcs2_mdental caries susceptibility 2 (mouse)Not determined240885493114910165Mouse
1301480Pbwg1_mpostnatal body weight growth 1 (mouse)Not determined24182071975820843Mouse
4141069Pbwg1.5_mpostnatal body weight growth 1.5 (mouse)Not determined4352061277520756Mouse
1300788Cia2_mcollagen induced arthritis QTL 2 (mouse)Not determined24352061277520756Mouse
1300671Cia4_mcollagen induced arthritis QTL 4 (mouse)Not determined24352061277520756Mouse
1301402Ap2q_malcohol preference 2 QTL (mouse)Not determined24352061277520756Mouse
1301411Pitm1_mprion incubation time 1 (mouse)Not determined24352061277520756Mouse
10755532Lymph5_mlymphocyte differential 5 (mouse)24419901778199017Mouse


Expression


Sequence


RefSeq Acc Id: ENSMUST00000127150
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl245,000,719 - 45,004,099 (+)Ensembl
GRCm38.p6 Ensembl245,110,707 - 45,114,087 (+)Ensembl
RefSeq Acc Id: ENSMUST00000130827
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl245,002,272 - 45,004,099 (+)Ensembl
GRCm38.p6 Ensembl245,112,260 - 45,114,087 (+)Ensembl
RefSeq Acc Id: ENSMUST00000183669
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl245,112,488 - 45,112,548 (+)Ensembl
RefSeq Acc Id: ENSMUST00000231441
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl245,002,745 - 45,003,764 (+)Ensembl
GRCm38.p6 Ensembl245,112,733 - 45,113,752 (+)Ensembl
RefSeq Acc Id: ENSMUST00000231986
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl245,002,500 - 45,003,783 (+)Ensembl
GRCm38.p6 Ensembl245,112,488 - 45,113,771 (+)Ensembl
RefSeq Acc Id: ENSMUST00000232324
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl245,000,933 - 45,003,357 (+)Ensembl
GRCm38.p6 Ensembl245,110,921 - 45,113,345 (+)Ensembl
RefSeq Acc Id: ENSMUST00020182545
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl245,002,500 - 45,002,560 (+)Ensembl
RefSeq Acc Id: NR_110571
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39245,002,272 - 45,004,099 (+)NCBI
GRCm38245,112,260 - 45,114,087 (+)NCBI
Celera246,823,642 - 46,826,761 (+)NCBI
Sequence:
RefSeq Acc Id: NR_110572
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39245,001,150 - 45,004,099 (+)NCBI
GRCm38245,111,138 - 45,114,087 (+)NCBI
Celera246,823,642 - 46,826,761 (+)NCBI
Sequence:
Promoters
RGD ID:6877252
Promoter ID:EPDNEW_M2077
Type:initiation region
Name:Zeb2os_2
Description:Mus musculus zinc finger E-box binding homeobox 2, opposite strand, transcript variant 2, long non-coding RNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M2078  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38245,111,205 - 45,111,265EPDNEW
RGD ID:6877254
Promoter ID:EPDNEW_M2078
Type:multiple initiation site
Name:Zeb2os_1
Description:Mus musculus zinc finger E-box binding homeobox 2, opposite strand, transcript variant 2, long non-coding RNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M2077  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38245,112,298 - 45,112,358EPDNEW
RGD ID:15092331
Promoter ID:EPDNEWNC_M245
Type:single initiation site
Name:Zeb2os_1
Description:zinc finger E-box binding homeobox 2, opposite strand[Source:MGI Symbol;Acc:MGI:3652108]
SO ACC ID:SO:0000170
Source:EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38245,112,298 - 45,112,358EPDNEWNC

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000052248 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000130827 ENTREZGENE
MGD MGI:3652108 ENTREZGENE
NCBI Gene 433424 ENTREZGENE
PhenoGen Zeb2os PhenoGen
RNAcentral URS000075BD53 RNACentral
  URS000075CB07 RNACentral


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-11-26 Zeb2os  zinc finger E-box binding homeobox 2, opposite strand  Gm13476  predicted gene 13476  Symbol and/or name change 5135510 APPROVED