Pwwp4-ps (PWWP domain containing 4, pseudogene) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Pwwp4-ps (PWWP domain containing 4, pseudogene) Mus musculus
Analyze
Symbol: Pwwp4-ps
Name: PWWP domain containing 4, pseudogene
RGD ID: 1619623
MGI Page MGI
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: EG434795; Gm5639; PWWP domain-containing protein MUM1-like
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X72,341,216 - 72,343,585 (+)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX72,341,199 - 72,343,601 (+)EnsemblGRCm39 Ensembl
GRCm38X73,297,610 - 73,299,979 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX73,297,593 - 73,299,995 (+)EnsemblGRCm38mm10GRCm38
MGSCv37X70,542,968 - 70,553,119 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X69,550,313 - 69,552,723 (+)NCBIMGSCv36mm8
Cytogenetic MapXA7.3NCBI
cM MapX37.29NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:16141072   PMID:16141073  


Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:290
Count of miRNA genes:227
Interacting mature miRNAs:237
Transcripts:ENSMUST00000122305, ENSMUST00000181599
Prediction methods:Miranda, Pita, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4141630Gct6_mgranulosa cell tumorigenesis 6 (mouse)Not determined47179121129764756Mouse
13464140Hdlq108_mHDL QTL 108 (mouse)X5777196091771960Mouse
1301009Pbwg7_mpostnatal body weight growth 7 (mouse)Not determinedX3911371473113814Mouse
4141565Pbwg21_mpostnatal body weight growth 21 (mouse)Not determinedX3911371473113814Mouse
25314311Syncl3_msynaptonemal complex length 3 (mouse)X5198887789743606Mouse
13824980Ferq1_mgenetic fertility QTL 1 (mouse)X54045360148782996Mouse
4142200Rtwq1_mreduced testis weight QTL 1 (mouse)Not determined4147706075477203Mouse
1300794Spha2_msperm head anomaly 2 (mouse)Not determinedX3992149886260137Mouse
12879918Shm4_msperm head morphology 4 (mouse)X72072050102062720Mouse
25314318Sccor2_msynaptonemal complex length to mean MLH1 count ratio 2 (mouse)X7054360696543606Mouse
1357433Dbts2_mdiabetes 2 (mouse)Not determinedX7226295150107038Mouse
1301278Bdln1_mbody length 1 (mouse)Not determinedX4170210675702218Mouse
1300702Fcsa4_mfemoral cross-sectional area 4 (mouse)Not determinedX4602744480027567Mouse
25314316Mlh1fc3_mMLH1 foci count 3 (mouse)X6134360689843606Mouse
10412108Desp5_mdespair 5 (mouse)Not determinedX5472235188722351Mouse
1357730Hstx1_mhybrid sterility, X chromosome 1 (mouse)Not determinedX7145385277600812Mouse
13208567Bmiq12_mbody mass index QTL 12 (mouse)X3526365377043606Mouse
4141665Mhysq2_mmale hybrid sterility QTL 2 (mouse)Not determined71453852139203212Mouse


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSMUST00000122305
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX72,341,199 - 72,343,601 (+)Ensembl
GRCm38.p6 EnsemblX73,297,593 - 73,299,995 (+)Ensembl
RefSeq Acc Id: XM_486706   ⟹   XP_486706
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38X73,297,610 - 73,299,979 (+)NCBI
MGSCv37X70,542,968 - 70,553,119 (+)RGD
cM MapX ENTREZGENE
Sequence:

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000082629 Ensembl, ENTREZGENE
MGD MGI:3645127 ENTREZGENE
NCBI Gene 434795 ENTREZGENE
PhenoGen Pwwp4-ps PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-08-24 Pwwp4-ps  PWWP domain containing 4, pseudogene  Gm5639  predicted pseudogene 5639  Symbol and/or name updated 27372883 PROVISIONAL
2011-07-27 Gm5639  predicted pseudogene 5639  EG434795  predicted gene, EG434795  Symbol and/or name change 5135510 APPROVED