Or5v1b (olfactory receptor family 5 subfamily V member 1B) - Rat Genome Database

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Gene: Or5v1b (olfactory receptor family 5 subfamily V member 1B) Mus musculus
Analyze
Symbol: Or5v1b
Name: olfactory receptor family 5 subfamily V member 1B
RGD ID: 1619595
MGI Page MGI
Description: Predicted to enable olfactory receptor activity. Predicted to be involved in detection of chemical stimulus involved in sensory perception of smell. Predicted to act upstream of or within G protein-coupled receptor signaling pathway and sensory perception of smell. Predicted to be located in membrane. Predicted to be active in plasma membrane. Orthologous to human OR5V1 (olfactory receptor family 5 subfamily V member 1).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: MOR249; olfactory receptor 111; olfactory receptor MOR249-1P; Olfr111
RGD Orthologs
Human
Rat
Bonobo
Dog
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391737,815,851 - 37,844,816 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1737,818,921 - 37,843,340 (+)EnsemblGRCm39 Ensembl
GRCm381737,525,753 - 37,537,652 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1737,508,030 - 37,532,449 (+)EnsemblGRCm38mm10GRCm38
MGSCv371737,666,902 - 37,667,942 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361737,138,032 - 37,138,985 (+)NCBIMGSCv36mm8
Celera1740,971,961 - 40,973,001 (+)NCBICelera
Cytogenetic Map17B1NCBI
cM Map1719.16NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:11802173   PMID:12477932   PMID:14506126   PMID:14611657   PMID:21873635   PMID:29984401   PMID:32295537  


Genomics

Comparative Map Data
Or5v1b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391737,815,851 - 37,844,816 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1737,818,921 - 37,843,340 (+)EnsemblGRCm39 Ensembl
GRCm381737,525,753 - 37,537,652 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1737,508,030 - 37,532,449 (+)EnsemblGRCm38mm10GRCm38
MGSCv371737,666,902 - 37,667,942 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361737,138,032 - 37,138,985 (+)NCBIMGSCv36mm8
Celera1740,971,961 - 40,973,001 (+)NCBICelera
Cytogenetic Map17B1NCBI
cM Map1719.16NCBI
OR5V1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38629,353,749 - 29,368,865 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl629,353,749 - 29,431,967 (-)EnsemblGRCh38hg38GRCh38
GRCh37629,321,526 - 29,336,642 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36629,430,986 - 29,432,033 (-)NCBINCBI36Build 36hg18NCBI36
Build 34629,430,985 - 29,432,033NCBI
Celera630,929,186 - 30,930,233 (-)NCBICelera
Cytogenetic Map6p22.1NCBI
HuRef629,130,619 - 29,131,666 (-)NCBIHuRef
CHM1_1629,325,270 - 29,326,317 (-)NCBICHM1_1
T2T-CHM13v2.0629,228,525 - 29,243,652 (-)NCBIT2T-CHM13v2.0
Or5v1b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8201,163,321 - 1,164,274 (+)NCBIGRCr8
mRatBN7.2201,158,073 - 1,159,026 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl201,151,540 - 1,159,222 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx201,193,522 - 1,194,475 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0201,197,008 - 1,197,961 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0201,153,628 - 1,154,581 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0201,647,469 - 1,648,422 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl201,647,441 - 1,648,449 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0203,692,456 - 3,693,409 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4201,246,310 - 1,247,263 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1201,246,309 - 1,247,258 (+)NCBI
Celera201,891,645 - 1,892,598 (+)NCBICelera
Cytogenetic Map20p12NCBI
LOC100972682
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2543,986,009 - 44,000,824 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1639,950,375 - 39,965,190 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0629,173,223 - 29,174,264 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1629,831,339 - 29,832,380 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl629,831,339 - 29,832,304 (-)Ensemblpanpan1.1panPan2
OR13L2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11757,996,386 - 57,997,345 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1757,996,386 - 57,997,345 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1757,464,971 - 57,465,930 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01758,999,636 - 59,000,595 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.11757,873,332 - 57,874,291 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01757,926,669 - 57,927,628 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01758,653,284 - 58,654,243 (+)NCBIUU_Cfam_GSD_1.0
LOC100152520
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa10.2725,794,642 - 25,795,595 (+)NCBISscrofa10.2Sscrofa10.2susScr3
LOC103221889
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11743,228,075 - 43,231,547 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1743,228,604 - 43,229,566 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604429,006,036 - 29,009,081 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0

Variants

.
Variants in Or5v1b
1 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:18
Count of miRNA genes:18
Interacting mature miRNAs:18
Transcripts:ENSMUST00000097325
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300890Bhr3_mbronchial hyperresponsiveness 3 (mouse)Not determined17397489048866091Mouse
4141215Mnic1_mmacronutrient intake, carbohydrate 1 (mouse)Not determined485475245670266Mouse
1300706Alan1_malloantigen response 1 (mouse)Not determined17485475246469702Mouse
1357789Kdnw3_mkidney weight 3 (mouse)Not determined17485475247885665Mouse
4141272Tfv1_mtotal food volume 1 (mouse)Not determined485475265637357Mouse
10043949Pbft7_mpercent body fat 7 (mouse)Not determined17689393640893936Mouse
1301935Skull24_mskull morphology 24 (mouse)Not determined17858491442585149Mouse
1300787Cd8mts5_mCD8 memory T cell subset 5 (mouse)Not determined17858491442585149Mouse
1301338Lmr1_mleishmaniasis resistance 1 (mouse)Not determined171008134086996400Mouse
1302028Asbb3_mautoimmune susceptibility in C57BL/6J and BALB/c 3 (mouse)Not determined171087811944878219Mouse
4142342Lfnq4_mlung function QTL 4 (mouse)Not determined1120648439364059Mouse
4141067Hbnr2_mHeligmosomoides bakeri nematode resistance 2 (mouse)Not determined1188597145886119Mouse
14747010Mancz14_mmandible centroid size 14 (mouse)171199818445998184Mouse
4142150Stheal11_msoft tissue heal 11 (mouse)Not determined171228621183361768Mouse
12904946Tammq8_mtibialis anterior muscle mass QTL 8 (mouse)171245178746451787Mouse
13524847Asrq8a_macoustic startle response 8a (mouse)171264696146646961Mouse
11081168Tir7_mtrypanosome infection response 7 (mouse)171412337248123496Mouse
1300995Fembrs4_mfemur breaking strength 4 (mouse)Not determined171506165249061760Mouse
1300914Pcir4_mperiosteal circumference 4 (mouse)Not determined171506165249061760Mouse
1302070Tbbmd7_mtotal body bone mineral density 7 (mouse)Not determined171506165249061760Mouse
1558886Lgth9_mbody length 9 (mouse)Not determined171506165249061760Mouse
1302140Wta4_mweight adult 4 (mouse)Not determined171681972150819843Mouse
1302152Skull25_mskull morphology 25 (mouse)Not determined171681972150819843Mouse
10412083Sm2_msusceptibility to Schistosoma mansoni infection 2 (mouse)Not determined171702994351030078Mouse
13452396Leusq3_mleucocytosis susceptibility QTL 3 (mouse)171746220851462345Mouse
13452399Leusq6_mleucocytosis susceptibility QTL 6 (mouse)171746220851462345Mouse
10412214Sxbq3_mSGC/Knj cross B6 QTL 3 (mouse)Not determined171746220851462345Mouse
1300535Char3_mP. chabaudi malaria resistance QTL 3 (mouse)Not determined171746220851462345Mouse
1301840Ssial4_msusceptibility to sialadenitiss 4 (mouse)Not determined171817541252178214Mouse
1301331Lbw1_mlupus NZB x NZW 1 (mouse)Not determined171841835752420983Mouse
1301056Pas2_mpulmonary adenoma susceptibility 2 (mouse)Not determined171842214152424327Mouse
15039354Nmrs36_mNAFLD-associated magnetic resonance shift 36 (mouse)171914502553145025Mouse
1301454Eae5_msusceptibility to experimental allergic encephalomyelitis 5 (mouse)Not determined172461275058612864Mouse
10412198Sst5_msusceptibility to tuberculosis 5 (mouse)Not determined172507658355712970Mouse
10412196Bbaa28_mB.burgdorferi-associated arthritis 28 (mouse)Not determined172558491443976235Mouse
10412204Bbaa29_mB.burgdorferi-associated arthritis 29 (mouse)Not determined172605118560051352Mouse
1558758Kcal2_mkilocalorie 2 (mouse)Not determined172640101252911704Mouse
1300602Eye2_meye weight 2 (mouse)Not determined172650533741105037Mouse
1302005Loco2_mlocomotor activity 2 (mouse)Not determined172688497260885114Mouse
11075105Modc1_mmodifier of Odc1 (mouse)172771579245622654Mouse
15039348Nmrs37_mNAFLD-associated magnetic resonance shift 37 (mouse)172781520961815209Mouse
10045977Tir9_mtrypanosome infection response 9 (mouse)Not determined172787811943885114Mouse
1300703Uvbi2_mUVB induced immunosuppression 2 (mouse)Not determined172862240662622654Mouse
1300589Myaa2_mmodifier of Yaa 2 (mouse)Not determined173013255564132666Mouse
4141357Mrdq1_mmodifier of retinal degeneration QTL 1 (mouse)Not determined3098790348039703Mouse
4140955Plgr1_mplague resistance locus 1 (mouse)Not determined3103350065033630Mouse
26884379Skwq5_mskull length QTL 5, 5 week (mouse)173311897454107028Mouse
1300885Mbis4_mMycobacterium bovis-induced systemic lupus erythematosus 4 (mouse)Not determined173517581770165926Mouse
10755514Amzn2_manatomical modifier of Zfp423 2 (mouse)173596629469966424Mouse
12904951Smmq2_msoleus muscle mass QTL 2 (mouse)173678974370789743Mouse
1301474Hcbip2_mhexachlorobenzene induced porphyria 2 (mouse)Not determined173779305545622654Mouse


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000097325   ⟹   ENSMUSP00000094933
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1737,840,848 - 37,841,888 (+)Ensembl
GRCm38.p6 Ensembl1737,529,957 - 37,530,997 (+)Ensembl
RefSeq Acc Id: ENSMUST00000214259   ⟹   ENSMUSP00000150585
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1737,818,921 - 37,843,340 (+)Ensembl
GRCm38.p6 Ensembl1737,508,030 - 37,532,449 (+)Ensembl
RefSeq Acc Id: ENSMUST00000215424   ⟹   ENSMUSP00000150806
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1737,836,851 - 37,843,340 (+)Ensembl
GRCm38.p6 Ensembl1737,525,960 - 37,532,449 (+)Ensembl
RefSeq Acc Id: NM_001005485   ⟹   NP_001005485
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391737,840,848 - 37,841,888 (+)NCBI
GRCm381737,529,957 - 37,530,997 (+)NCBI
MGSCv371737,666,902 - 37,667,942 (+)RGD
Celera1740,971,961 - 40,973,001 (+)RGD
cM Map17 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_017317578   ⟹   XP_017173067
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391737,836,644 - 37,844,816 (+)NCBI
GRCm381737,525,753 - 37,531,857 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036160687   ⟹   XP_036016580
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391737,815,851 - 37,842,749 (+)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_001005485   ⟸   NM_001005485
- UniProtKB: Q7TRK1 (UniProtKB/TrEMBL),   Q7TRK2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017173067   ⟸   XM_017317578
- Peptide Label: isoform X2
- UniProtKB: Q7TRK1 (UniProtKB/TrEMBL),   Q7TRK2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000150806   ⟸   ENSMUST00000215424
RefSeq Acc Id: ENSMUSP00000094933   ⟸   ENSMUST00000097325
RefSeq Acc Id: ENSMUSP00000150585   ⟸   ENSMUST00000214259
RefSeq Acc Id: XP_036016580   ⟸   XM_036160687
- Peptide Label: isoform X1
- UniProtKB: Q7TRK2 (UniProtKB/TrEMBL)
Protein Domains
G-protein coupled receptors family 1 profile

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q7TRK1-F1-model_v2 AlphaFold Q7TRK1 1-317 view protein structure


Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2177494 AgrOrtholog
Ensembl Genes ENSMUSG00000090675 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000097325 ENTREZGENE
  ENSMUST00000097325.4 UniProtKB/TrEMBL
  ENSMUST00000214259.2 UniProtKB/TrEMBL
  ENSMUST00000215424 ENTREZGENE
  ENSMUST00000215424.2 UniProtKB/TrEMBL
Gene3D-CATH Rhodopsin 7-helix transmembrane proteins UniProtKB/TrEMBL
InterPro 7TM_GPCR_Rhodpsn UniProtKB/TrEMBL
  GPCR_Rhodpsn_supfam UniProtKB/TrEMBL
  Olfact_rcpt UniProtKB/TrEMBL
KEGG Report mmu:545205 UniProtKB/TrEMBL
MGD MGI:2177494 ENTREZGENE
NCBI Gene 545205 ENTREZGENE
PANTHER OLFACTORY RECEPTOR UniProtKB/TrEMBL
  OLFACTORY RECEPTOR 5V1 UniProtKB/TrEMBL
Pfam 7tm_4 UniProtKB/TrEMBL
PhenoGen Or5v1b PhenoGen
PRINTS GPCRRHODOPSN UniProtKB/TrEMBL
  OLFACTORYR UniProtKB/TrEMBL
PROSITE G_PROTEIN_RECEP_F1_1 UniProtKB/TrEMBL
  G_PROTEIN_RECEP_F1_2 UniProtKB/TrEMBL
Superfamily-SCOP Family A G protein-coupled receptor-like UniProtKB/TrEMBL
UniProt Q7TRK1 ENTREZGENE, UniProtKB/TrEMBL
  Q7TRK2 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-05-21 Or5v1b  olfactory receptor family 5 subfamily V member 1B  Olfr111  olfactory receptor 111  Symbol and/or name change 5135510 APPROVED