Gm5819 (predicted gene 5819) - Rat Genome Database

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Gene: Gm5819 (predicted gene 5819) Mus musculus
Analyze
Symbol: Gm5819
Name: predicted gene 5819
RGD ID: 1619590
MGI Page MGI
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: EG545242
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39188,693,958 - 8,697,114 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl188,694,099 - 8,694,537 (+)EnsemblGRCm39 Ensembl
GRCm38188,693,958 - 8,697,114 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl188,694,099 - 8,694,537 (+)EnsemblGRCm38mm10GRCm38
MGSCv37188,686,767 - 8,696,287 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36188,693,807 - 8,694,539 (+)NCBIMGSCv36mm8
MGSCv36188,556,101 - 8,556,833 (+)NCBIMGSCv36mm8
Cytogenetic Map18A1NCBI
cM Map184.72NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

.
Variants in Gm5819
6 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:171
Count of miRNA genes:163
Interacting mature miRNAs:170
Transcripts:ENSMUST00000171469
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4142127Rafaril_mRafar interacting locus (mouse)Not determined18123108555Mouse
14928307Manh83_mmandible shape 83 (mouse)18126902168Mouse
11354953Mom21_mmodifier of Min 21 (mouse)18128893823Mouse
12801462Intim3_mintima modifier 3 (mouse)18131720756Mouse
12801458Intmrm3_mintima/media ratio modifier 3 (mouse)18131720756Mouse
13207585Mwmlpt3_mMorris water maze latency to platform, training, 3 (mouse)18133547739Mouse
13207589Mwmlpa3_mMorris water maze latency to platform, all, 3 (mouse)18133547739Mouse
27226723Tibw9_mtibia width 9, proximal, 16 week (mouse)18320000060933072Mouse
1558849W3q15_mweight 3 weeks QTL 15 (mouse)Not determined18504111961272643Mouse
4142250Idd21.3_minsulin dependent diabetes susceptibility 21.3 (mouse)Not determined18610840421646477Mouse
1558873Hrtfm7_mheart failure modifier 7 (mouse)Not determined18808696442087106Mouse


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000171469
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl188,694,099 - 8,694,537 (+)Ensembl
GRCm38.p6 Ensembl188,694,099 - 8,694,537 (+)Ensembl
RefSeq Acc Id: XR_105926
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv37188,686,767 - 8,696,287 (+)RGD
RefSeq Acc Id: XR_105927
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv37188,686,767 - 8,696,287 (+)RGD
RefSeq Acc Id: XR_105928
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv37188,686,767 - 8,696,287 (+)RGD

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000092097 Ensembl
MGD MGI:3643122 ENTREZGENE
NCBI Gene Gm5819 ENTREZGENE
PhenoGen Gm5819 PhenoGen