Gm5953 (predicted gene 5953) - Rat Genome Database

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Gene: Gm5953 (predicted gene 5953) Mus musculus
Analyze
Symbol: Gm5953
Name: predicted gene 5953
RGD ID: 1619580
MGI Page MGI
Description:
Type: ncrna (Ensembl: TEC)
RefSeq Status: MODEL
Previously known as: EG546524; predicted gene, EG546524
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391219,338,489 - 19,368,134 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1219,338,563 - 19,341,178 (+)EnsemblGRCm39 Ensembl
GRCm381219,288,488 - 19,308,239 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1219,288,562 - 19,291,177 (+)EnsemblGRCm38mm10GRCm38
MGSCv371219,294,417 - 19,297,032 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361219,535,046 - 19,537,661 (+)NCBIMGSCv36mm8
Cytogenetic Map12A1.2NCBI
cM Map128.21NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:14610273   PMID:16141072   PMID:16141073   PMID:18799693  


Genomics

Variants

.
Variants in Gm5953
124 total Variants

QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
11039525Tbbr2_mTrypanosoma brucei brucei response 2 (mouse)12122418579Mouse
1301393Dyscalc3_mdystrophic cardiac calcinosis 3 (mouse)Not determined12122418579Mouse
10402496Lmr22_mleishmaniasis resistance 22 (mouse)Not determined12122418579Mouse
1301143Skull17_mskull morphology 17 (mouse)Not determined12122418579Mouse
1357519Vtbt12_mvertebral trabecular bone trait 12 (mouse)Not determined12124662697Mouse
1301655Bmd12_mbone mineral density 12 (mouse)Not determined12124662697Mouse
4141296Femwf9_mfemur work to failure 9 (mouse)Not determined127920733Mouse
4141436Chldq7_mcholesterol and HDL QTL 7 (mouse)Not determined12127920733Mouse
12910983Pifs1_mpeptide-induced fatal syndrome 1 (mouse)12130433078Mouse
1301925Ath6_matherosclerosis 6 (mouse)Not determined12132758756Mouse
1301207Circp1_mcircadian photosensitivity 1 (mouse)Not determined12133430339Mouse
4141660Nbwa1_mNZB and NZW autoimmunity 1 (mouse)Not determined1234013434340302Mouse
26884410Bzwq15_mbi-zygomatic width QTL 15, 16 week (mouse)12365000029749999Mouse
4142234Tmc1m3_mTmc1 modifier 3 (mouse)Not determined12541844077031203Mouse
1301163Eae16_msusceptibility to experimental allergic encephalomyelitis 16 (mouse)Not determined12772315841723301Mouse
13208568Bmiq11_mbody mass index QTL 11 (mouse)12805000040049999Mouse
1301037Cd4ts5_mCD4 T cell subset 5 (mouse)Not determined12835244442352581Mouse
1301723Fcsa7_mfemoral cross-sectional area 7 (mouse)Not determined12949100443491112Mouse
27226753Femd7_mfemur midshaft diameter 7, 10 week (mouse)12955000084146774Mouse
12792982Fbmd4_mfemoral bone mineral density 4, females only (mouse)121004319424365136Mouse
14746972Manh72_mmandible shape 72 (mouse)121061528144615281Mouse
10401249Bglu15_mblood glucose level 15 (mouse)Not determined121062064244620809Mouse
13524843Ppiq8_mprepulse inhibition QTL 8 (mouse)121104319450945796Mouse
13207568Tcq14_mtotal cholesterol QTL 14 (mouse)121166000197176774Mouse
4141516slwr_mslowlearner (mouse)Not determined1239247546392614Mouse
13524839Ppiq10_mprepulse inhibition QTL 10 (mouse)121304319554945798Mouse
10043977Obq34_mobesity QTL 34 (mouse)Not determined121514733149147331Mouse
1558978Cplaq10_mcircadian period of locomotor activity 10 (mouse)Not determined121534102679040364Mouse
26884413Bzwq9_mbi-zygomatic width QTL 9, 10 week (mouse)121615000147746783Mouse
1301574Lmblgq5_mlimb length QTL 5 (mouse)Not determined121759644780956883Mouse
15039339Nmrs29_mNAFLD-associated magnetic resonance shift 29 (mouse)121782585251825852Mouse
10043848Hdlq90_mHDL QTL 90 (mouse)Not determined121783993951840081Mouse
1300870Ath18_matherosclerosis 18 (mouse)Not determined121825996652260067Mouse


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000220644
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1219,338,563 - 19,341,178 (+)Ensembl
GRCm38.p6 Ensembl1219,288,562 - 19,291,177 (+)Ensembl
RefSeq Acc Id: XR_003950287
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391219,338,489 - 19,340,020 (+)NCBI
GRCm381219,288,847 - 19,305,185 (+)NCBI
Sequence:
RefSeq Acc Id: XR_003950288
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391219,338,489 - 19,358,091 (+)NCBI
GRCm381219,288,488 - 19,308,239 (+)NCBI
Sequence:
RefSeq Acc Id: XR_004937692
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391219,338,489 - 19,355,948 (+)NCBI
Sequence:
RefSeq Acc Id: XR_004937693
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391219,338,489 - 19,358,240 (+)NCBI
Sequence:
RefSeq Acc Id: XR_004937694
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391219,338,489 - 19,352,647 (+)NCBI
Sequence:
RefSeq Acc Id: XR_004937695
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391219,338,489 - 19,368,134 (+)NCBI
Sequence:
RefSeq Acc Id: XR_004937696
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391219,338,489 - 19,339,790 (+)NCBI
Sequence:
RefSeq Acc Id: XR_004937697
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391219,338,489 - 19,368,134 (+)NCBI
Sequence:
RefSeq Acc Id: XR_004937698
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391219,338,489 - 19,340,020 (+)NCBI
Sequence:
RefSeq Acc Id: XR_004937699
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391219,338,489 - 19,368,134 (+)NCBI
Sequence:
RefSeq Acc Id: XR_004937700
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391219,338,489 - 19,368,134 (+)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000113570 Ensembl
MGD MGI:3647171 ENTREZGENE
NCBI Gene 546524 ENTREZGENE
PhenoGen Gm5953 PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-04-12 Gm5953  predicted gene 5953  EG546524  predicted gene, EG546524  Symbol and/or name change 5135510 APPROVED