Gm8615 (predicted pseudogene 8615) - Rat Genome Database

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Gene: Gm8615 (predicted pseudogene 8615) Mus musculus
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Symbol: Gm8615
Name: predicted pseudogene 8615
RGD ID: 1619379
MGI Page MGI
Description:
Type: pseudo (Ensembl: transcribed_processed_pseudogene)
RefSeq Status: VALIDATED
Previously known as: EG667410
Related Functional Gene: Gnpda1  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395149,090,938 - 149,093,002 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5149,092,249 - 149,093,019 (-)EnsemblGRCm39 Ensembl
GRCm385149,154,128 - 149,156,192 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5149,155,108 - 149,156,209 (-)EnsemblGRCm38mm10GRCm38
MGSCv375149,965,704 - 149,967,768 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365149,464,465 - 149,471,910 (-)NCBIMGSCv36mm8
Celera5147,169,450 - 147,171,632 (-)NCBICelera
Cytogenetic Map5G3NCBI
cM Map589.18NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:11544199  


Genomics

Variants

.
Variants in Gm8615
92 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:124
Count of miRNA genes:122
Interacting mature miRNAs:123
Transcripts:ENSMUST00000025307
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301226Bbaa2_mB.burgdorferi-associated arthritis 2 (mouse)Not determined5115156883149157015Mouse
1300827Cora1_mcorrelation in cytokine production 1 (mouse)Not determined5115156883149157015Mouse
1301857Bglq14_mbody growth late QTL 14 (mouse)Not determined5118948964151758149Mouse
4141081Nidd7k_mNidd7 on KK-A (mouse)Not determined119945037149347326Mouse
11528552Scram1_mspinal cord resistance to astrocytoma modifier 1 (mouse)5121455402151758149Mouse
1301986Bpq4_mblood pressure QTL 4 (mouse)Not determined5121555236151758149Mouse
1302079Lbw3_mlupus NZB x NZW 3 (mouse)Not determined5124700335151758149Mouse
1301363Pbwg13_mpostnatal body weight growth 13 (mouse)Not determined5125133457151758149Mouse
4141218Ath24_matherosclerosis 24 (mouse)Not determined129520084151758149Mouse
12880406Jcdq2_mjoint cartilage degeneration QTL 2 (mouse)5129787831151758149Mouse
11049557Lmr26_mleishmaniasis resistance 26 (mouse)5133925558151758149Mouse
13504735Ifvrq7_minfluenza virus resistance QTL 7 (mouse)5139509801151658149Mouse
13504737Ifvrq5_minfluenza virus resistance QTL 5 (mouse)5139509801151658149Mouse
13504734Ifvrq4_minfluenza virus resistance QTL 4 (mouse)5139985755151658149Mouse


Expression


Sequence


RefSeq Acc Id: ENSMUST00000025307
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5149,092,249 - 149,093,019 (-)Ensembl
GRCm38.p6 Ensembl5149,155,439 - 149,156,209 (-)Ensembl
RefSeq Acc Id: ENSMUST00000201946
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5149,091,918 - 149,092,829 (-)Ensembl
GRCm38.p6 Ensembl5149,155,108 - 149,156,019 (-)Ensembl
RefSeq Acc Id: NR_028061
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395149,090,938 - 149,093,002 (-)NCBI
GRCm385149,154,128 - 149,156,192 (-)ENTREZGENE
MGSCv375149,965,704 - 149,967,768 (-)RGD
Celera5147,169,450 - 147,171,632 (-)RGD
cM Map5 ENTREZGENE
Sequence:

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000024437 Ensembl
MGD MGI:3647532 ENTREZGENE
NCBI Gene 667410 ENTREZGENE
PhenoGen Gm8615 PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2011-07-27 Gm8615  predicted pseudogene 8615  Gm8615  predicted gene 8615  Symbol and/or name change 5135510 APPROVED