Rtkn (rhotekin) - Rat Genome Database
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Gene: Rtkn (rhotekin) Mus musculus
Analyze
Symbol: Rtkn
Name: rhotekin
RGD ID: 1619247
MGI Page MGI
Description: Is expressed in several structures, including alimentary system; brain; genitourinary system; hemolymphoid system gland; and liver and biliary system. Orthologous to human RTKN (rhotekin); INTERACTS WITH 1,2-dimethylhydrazine; 17alpha-ethynylestradiol; 1H-pyrazole.
Type: protein-coding
RefSeq Status: VALIDATED
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39683,112,485 - 83,129,560 (+)NCBIGRCm39mm39
GRCm39 Ensembl683,112,444 - 83,129,560 (+)Ensembl
GRCm38683,135,505 - 83,152,579 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl683,135,463 - 83,152,579 (+)EnsemblGRCm38mm10GRCm38
MGSCv37683,085,802 - 83,102,573 (+)NCBIGRCm37mm9NCBIm37
MGSCv36683,102,747 - 83,118,234 (+)NCBImm8
Celera685,118,785 - 85,135,485 (+)NCBICelera
Cytogenetic Map6C3NCBI
cM Map635.94NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

Additional References at PubMed
PMID:8662891   PMID:9073523   PMID:9806835   PMID:10349636   PMID:10873388   PMID:10940294   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12015964   PMID:12466851   PMID:12477932  
PMID:12529446   PMID:12874278   PMID:12944407   PMID:14966563   PMID:15489334   PMID:15652341   PMID:15664190   PMID:15694321   PMID:15761153   PMID:15782199   PMID:15797222   PMID:15996550  
PMID:16141072   PMID:16141073   PMID:17331196   PMID:18448676   PMID:20300064   PMID:20348415   PMID:21029865   PMID:21873635   PMID:22404908   PMID:22503686   PMID:26410627   PMID:32325033  


Genomics

Comparative Map Data
Rtkn
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39683,112,485 - 83,129,560 (+)NCBIGRCm39mm39
GRCm39 Ensembl683,112,444 - 83,129,560 (+)Ensembl
GRCm38683,135,505 - 83,152,579 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl683,135,463 - 83,152,579 (+)EnsemblGRCm38mm10GRCm38
MGSCv37683,085,802 - 83,102,573 (+)NCBIGRCm37mm9NCBIm37
MGSCv36683,102,747 - 83,118,234 (+)NCBImm8
Celera685,118,785 - 85,135,485 (+)NCBICelera
Cytogenetic Map6C3NCBI
cM Map635.94NCBI
RTKN
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl274,425,835 - 74,442,422 (-)EnsemblGRCh38hg38GRCh38
GRCh38274,425,835 - 74,441,937 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37274,652,962 - 74,669,064 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36274,506,496 - 74,522,568 (-)NCBINCBI36hg18NCBI36
Build 34274,564,665 - 74,578,602NCBI
Celera274,484,177 - 74,500,249 (-)NCBI
Cytogenetic Map2p13.1NCBI
HuRef274,389,300 - 74,405,372 (-)NCBIHuRef
CHM1_1274,582,406 - 74,598,477 (-)NCBICHM1_1
Rtkn
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.24115,640,801 - 115,657,952 (+)NCBI
Rnor_6.0 Ensembl4114,835,064 - 114,850,701 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.04114,833,453 - 114,850,705 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.04179,422,348 - 179,439,775 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44117,348,330 - 117,363,967 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.14117,592,810 - 117,608,448 (+)NCBI
Celera4104,636,452 - 104,652,089 (+)NCBICelera
Cytogenetic Map4q34NCBI
Rtkn
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542411,344,220 - 11,360,832 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542411,344,504 - 11,358,344 (+)NCBIChiLan1.0ChiLan1.0
RTKN
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.12A75,998,513 - 76,015,046 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A75,998,494 - 76,015,046 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v02A74,492,520 - 74,509,037 (-)NCBIMhudiblu_PPA_v0panPan3
RTKN
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl1748,685,089 - 48,699,966 (+)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.11748,684,794 - 48,700,309 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Rtkn
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_004936556650,303 - 665,324 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RTKN
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl368,598,236 - 68,613,633 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1368,598,560 - 68,613,633 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2371,811,931 - 71,823,550 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RTKN
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11432,835,660 - 32,851,799 (+)NCBI
ChlSab1.1 Ensembl1432,837,546 - 32,855,912 (+)Ensembl
Rtkn
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462474929,061,202 - 29,077,928 (+)NCBI

Position Markers
U54638  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38683,152,444 - 83,152,526UniSTSGRCm38
MGSCv37683,102,438 - 83,102,520UniSTSGRCm37
Celera685,135,350 - 85,135,432UniSTS
Cytogenetic Map6C3UniSTS
Cytogenetic Map6D1UniSTS
cM Map634.81UniSTS
Whitehead/MRC_RH6851.62UniSTS
D6UmiJ11  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38683,136,476 - 83,136,645UniSTSGRCm38
MGSCv37683,086,470 - 83,086,639UniSTSGRCm37
Celera685,119,453 - 85,119,596UniSTS
Cytogenetic Map6C3UniSTS
cM Map634.78UniSTS
D6UmiJ9  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38683,134,643 - 83,134,799UniSTSGRCm38
MGSCv37683,084,637 - 83,084,793UniSTSGRCm37
Celera685,117,620 - 85,117,776UniSTS
Cytogenetic Map6C3UniSTS
cM Map634.77UniSTS
Rtkn  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38683,152,382 - 83,152,555UniSTSGRCm38
MGSCv37683,102,376 - 83,102,549UniSTSGRCm37
Celera685,135,288 - 85,135,461UniSTS
Cytogenetic Map6C3UniSTS
Cytogenetic Map6D1UniSTS
cM Map634.81UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
25440480Moaq2_mmodifier of alien QTL 2 (mouse)61117500000Mouse
26884414Bzwq12_mbi-zygomatic width QTL 12, 16 week (mouse)63400000139100000Mouse
1300556Cia6_mcollagen induced arthritis QTL 6 (mouse)Not determined6446488487426034Mouse
4142126W3q3_mweight 3 weeks QTL 3 (mouse)Not determined450382396656149Mouse
4142361W10q11_mweight 10 weeks QTL 11 (mouse)Not determined450382396656149Mouse
4142271Egq8_mearly growth QTL 8 (mouse)Not determined450382396656149Mouse
4142232W6q4_mweight 6 weeks QTL 4 (mouse)Not determined450382396656149Mouse
1558984Cplaq9_mcircadian period of locomotor activity 9 (mouse)Not determined63866962592607450Mouse
1300618Pgia19_mproteoglycan induced arthritis 19 (mouse)Not determined64531405987426034Mouse
10412157Fl1n_mfatty liver 1 in NSY (mouse)Not determined645314059128835032Mouse
4142259Tabw2_mtally ho associated body weight 2 (mouse)Not determined46935985136423692Mouse
25314319Histh6_mhistamine hypersensitivity 6 (mouse)648720000125360000Mouse
25314320Histh5_mhistamine hypersensitivity 5 (mouse)648720000148450000Mouse
1301962Eila2_methanol induced locomotor activity 2 (mouse)Not determined648726556125356785Mouse
1301254Skts11_mskin tumor susceptibility 11 (mouse)Not determined65117915085179300Mouse
1357683Igf1sl1_mIGF-1 serum levels 1 (mouse)Not determined652161713116155267Mouse
4141028Mclr_mmethylcholanthrene lymphoma resistance (mouse)Not determined5437342788379171Mouse
15039373Adip28_madiposity 28 (mouse)65630821190308211Mouse
15039375Bw41_mbody weight QTL 41 (mouse)65630821190308211Mouse
1558977Skmw10_mskeletal muscle weight 10 (mouse)Not determined65844758392447710Mouse
10043972Obq28_mobesity QTL 28 (mouse)Not determined65854043392540433Mouse
1301740Bwq2_mbody weight QTL 2 (mouse)Not determined66005768094057799Mouse
1301369Im4_mimmunoregulatory 4 (mouse)Not determined66348473897484905Mouse
1300650Bw18_mbody weight QTL 18 (mouse)Not determined666713869100714031Mouse
1301876Bits2_mbitterness sensitivity 2 (mouse)Not determined670425898104426034Mouse
1301813Skl3_mskeletal size (tail length) 3 (mouse)Not determined670425898104426034Mouse
1301034Egrm2_mearly growth rate (mouse)Not determined670425898104426034Mouse
4141990Etax6_methanol induced ataxia 6 (mouse)Not determined7132262186275719Mouse
1302020Bbaa20_mB.burgdorferi-associated arthritis 20 (mouse)Not determined67132262193464093Mouse
1300869Stheal5_msoft tissue heal 5 (mouse)Not determined671575060105575178Mouse
1300954Fcsa1_mfemoral cross-sectional area 1 (mouse)Not determined671981024105981170Mouse
1301521Pas1c_mpulmonary adenoma susceptibility 1c (mouse)Not determined671981024105981170Mouse
13506930Recrq9_mrecombination rate in male meiosis QTL 9 (mouse)673500000134700000Mouse
1301320Ots1_movarian teratoma susceptibility 1 (mouse)Not determined675447583104503555Mouse
1301571Arrd1_mage-related retinal degeneration 1 (mouse)Not determined67554435692607450Mouse
1300674Nidd3n_mnon-insulin-dependent diabetes mellitus 3 in NSY (mouse)Not determined67554435694225955Mouse
10412195Efw_mepididymal fat weight (mouse)Not determined67554435694225955Mouse
10043901Pfat5_mpredicted fat percentage 5 (mouse)Not determined675607306109607450Mouse
10412208Cypr4_mcytokine production 4 (mouse)Not determined675716503109716697Mouse
1357875Pfat2_mpredicted fat percentage 2 (mouse)Not determined676463949110464093Mouse
14697704Stsl4_mSalmonella typhimurium susceptibility locus 4 (mouse)67710000090000000Mouse
13824985Alh1_mamplitude of lateral head displacement 1 (mouse)67800000097000000Mouse
4141376Dbm1_mdiabetes modifier 1 (mouse)Not determined678629504121115387Mouse
14696731Pairq1_mP. aeruginosa infection resistance QTL 1 (mouse)681500000102200000Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2000
Count of miRNA genes:613
Interacting mature miRNAs:738
Transcripts:ENSMUST00000065512, ENSMUST00000087938, ENSMUST00000121093, ENSMUST00000129316, ENSMUST00000130622, ENSMUST00000133226, ENSMUST00000135490
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001136227 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001355524 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001355525 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_009106 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_133641 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006505805 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006505807 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006505808 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006505809 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006505810 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006505811 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006505812 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030255273 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030255274 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030255275 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036165969 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036165970 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC007306 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC104324 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK076155 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK164943 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK197034 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK197854 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BB864269 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC004824 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC013820 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BG228325 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BQ886086 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY104108 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY231175 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466523 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CX218519 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U54638 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000065512   ⟹   ENSMUSP00000065571
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl683,135,812 - 83,152,579 (+)Ensembl
RefSeq Acc Id: ENSMUST00000087938   ⟹   ENSMUSP00000085249
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl683,137,110 - 83,152,579 (+)Ensembl
RefSeq Acc Id: ENSMUST00000121093   ⟹   ENSMUSP00000112501
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl683,137,089 - 83,152,579 (+)Ensembl
RefSeq Acc Id: ENSMUST00000129316   ⟹   ENSMUSP00000120640
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl683,142,564 - 83,147,675 (+)Ensembl
RefSeq Acc Id: ENSMUST00000130622   ⟹   ENSMUSP00000122660
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl683,142,392 - 83,148,154 (+)Ensembl
RefSeq Acc Id: ENSMUST00000133226
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl683,150,755 - 83,152,208 (+)Ensembl
RefSeq Acc Id: ENSMUST00000135490   ⟹   ENSMUSP00000116964
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl683,135,463 - 83,149,558 (+)Ensembl
RefSeq Acc Id: ENSMUST00000203183
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl683,147,835 - 83,150,240 (+)Ensembl
RefSeq Acc Id: ENSMUST00000213056   ⟹   ENSMUSP00000148398
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl683,151,310 - 83,152,275 (+)Ensembl
RefSeq Acc Id: NM_001136227   ⟹   NP_001129699
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39683,112,789 - 83,129,560 (+)NCBI
GRCm38683,135,808 - 83,152,579 (+)NCBI
MGSCv37683,085,802 - 83,102,573 (+)RGD
Celera685,118,785 - 85,135,485 (+)RGD
cM Map6 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001355524   ⟹   NP_001342453
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39683,119,087 - 83,129,560 (+)NCBI
GRCm38683,142,106 - 83,152,579 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001355525   ⟹   NP_001342454
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39683,119,087 - 83,129,560 (+)NCBI
GRCm38683,142,106 - 83,152,579 (+)NCBI
Sequence:
RefSeq Acc Id: NM_009106   ⟹   NP_033132
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39683,114,065 - 83,129,560 (+)NCBI
GRCm38683,137,084 - 83,152,579 (+)NCBI
MGSCv37683,085,802 - 83,102,573 (+)RGD
Celera685,118,785 - 85,135,485 (+)RGD
cM Map6 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_133641   ⟹   NP_598396
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39683,114,065 - 83,129,560 (+)NCBI
GRCm38683,137,084 - 83,152,579 (+)NCBI
MGSCv37683,085,802 - 83,102,573 (+)RGD
Celera685,118,785 - 85,135,485 (+)RGD
cM Map6 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006505805   ⟹   XP_006505868
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39683,118,929 - 83,127,882 (+)NCBI
GRCm38683,141,990 - 83,150,901 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006505807   ⟹   XP_006505870
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39683,112,656 - 83,127,882 (+)NCBI
GRCm38683,135,667 - 83,150,901 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006505808   ⟹   XP_006505871
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39683,113,975 - 83,127,882 (+)NCBI
GRCm38683,136,127 - 83,150,901 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006505809   ⟹   XP_006505872
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39683,113,975 - 83,127,882 (+)NCBI
GRCm38683,136,986 - 83,150,901 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006505810   ⟹   XP_006505873
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39683,112,485 - 83,127,882 (+)NCBI
GRCm38683,135,505 - 83,150,901 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006505811   ⟹   XP_006505874
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39683,113,975 - 83,127,882 (+)NCBI
GRCm38683,136,987 - 83,150,901 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006505812   ⟹   XP_006505875
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39683,119,374 - 83,127,882 (+)NCBI
GRCm38683,142,569 - 83,150,901 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030255273   ⟹   XP_030111133
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39683,114,000 - 83,129,560 (+)NCBI
GRCm38683,137,013 - 83,152,579 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030255274   ⟹   XP_030111134
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39683,113,990 - 83,129,560 (+)NCBI
GRCm38683,136,190 - 83,152,579 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030255275   ⟹   XP_030111135
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39683,119,374 - 83,129,560 (+)NCBI
GRCm38683,142,411 - 83,152,579 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036165969   ⟹   XP_036021862
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39683,112,783 - 83,129,560 (+)NCBI
RefSeq Acc Id: XM_036165970   ⟹   XP_036021863
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39683,113,990 - 83,129,560 (+)NCBI
Reference Sequences
RefSeq Acc Id: NP_033132   ⟸   NM_009106
- Peptide Label: isoform b
- UniProtKB: Q8C6B2 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_598396   ⟸   NM_133641
- Peptide Label: isoform b
- UniProtKB: Q8C6B2 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001129699   ⟸   NM_001136227
- Peptide Label: isoform a
- UniProtKB: Q8C6B2 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006505873   ⟸   XM_006505810
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_006505870   ⟸   XM_006505807
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_006505871   ⟸   XM_006505808
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_006505872   ⟸   XM_006505809
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_006505874   ⟸   XM_006505811
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_006505868   ⟸   XM_006505805
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006505875   ⟸   XM_006505812
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_030111134   ⟸   XM_030255274
- Peptide Label: isoform X7
RefSeq Acc Id: XP_030111133   ⟸   XM_030255273
- Peptide Label: isoform X5
RefSeq Acc Id: NP_001342454   ⟸   NM_001355525
- Peptide Label: isoform d
RefSeq Acc Id: NP_001342453   ⟸   NM_001355524
- Peptide Label: isoform c
RefSeq Acc Id: XP_030111135   ⟸   XM_030255275
- Peptide Label: isoform X8
RefSeq Acc Id: ENSMUSP00000122660   ⟸   ENSMUST00000130622
RefSeq Acc Id: ENSMUSP00000065571   ⟸   ENSMUST00000065512
RefSeq Acc Id: ENSMUSP00000085249   ⟸   ENSMUST00000087938
RefSeq Acc Id: ENSMUSP00000116964   ⟸   ENSMUST00000135490
RefSeq Acc Id: ENSMUSP00000112501   ⟸   ENSMUST00000121093
RefSeq Acc Id: ENSMUSP00000148398   ⟸   ENSMUST00000213056
RefSeq Acc Id: ENSMUSP00000120640   ⟸   ENSMUST00000129316
RefSeq Acc Id: XP_036021862   ⟸   XM_036165969
- Peptide Label: isoform X6
RefSeq Acc Id: XP_036021863   ⟸   XM_036165970
- Peptide Label: isoform X7
Protein Domains
PH   REM-1

Promoters
RGD ID:6839953
Promoter ID:MM_KWN:46580
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day1,   3T3L1_Day2,   Kidney,   Lung,   MEF_B4,   MEF_B6
Transcripts:OTTMUST00000066648,   OTTMUST00000066651
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36683,084,586 - 83,085,997 (+)MPROMDB
RGD ID:6839949
Promoter ID:MM_KWN:46581
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000121093,   OTTMUST00000066650
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36683,086,166 - 83,088,077 (+)MPROMDB
RGD ID:6839952
Promoter ID:MM_KWN:46582
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   Brain,   ES_Cell,   Lung
Transcripts:OTTMUST00000066652,   OTTMUST00000066654
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36683,091,706 - 83,092,557 (+)MPROMDB
RGD ID:6839954
Promoter ID:MM_KWN:46583
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain,   Kidney,   Lung
Transcripts:OTTMUST00000066653
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36683,099,956 - 83,101,057 (+)MPROMDB
RGD ID:6890138
Promoter ID:EPDNEW_M8520
Type:multiple initiation site
Name:Rtkn_1
Description:Mus musculus rhotekin , transcript variant 3, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M8521  EPDNEW_M8522  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38683,135,868 - 83,135,928EPDNEW
RGD ID:6890140
Promoter ID:EPDNEW_M8521
Type:multiple initiation site
Name:Rtkn_2
Description:Mus musculus rhotekin , transcript variant 3, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M8520  EPDNEW_M8522  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38683,137,047 - 83,137,107EPDNEW
RGD ID:6890142
Promoter ID:EPDNEW_M8522
Type:initiation region
Name:Rtkn_3
Description:Mus musculus rhotekin , transcript variant 3, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M8520  EPDNEW_M8521  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38683,137,860 - 83,137,920EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:107371 AgrOrtholog
Ensembl Genes ENSMUSG00000034930 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000065571 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000085249 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000112501 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000116964 UniProtKB/TrEMBL
  ENSMUSP00000120640 UniProtKB/TrEMBL
  ENSMUSP00000122660 UniProtKB/TrEMBL
  ENSMUSP00000148398 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000065512 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000087938 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000121093 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000129316 UniProtKB/TrEMBL
  ENSMUST00000130622 UniProtKB/TrEMBL
  ENSMUST00000135490 UniProtKB/TrEMBL
  ENSMUST00000213056 UniProtKB/TrEMBL
InterPro AHD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  HR1_rho-bd UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PH_domain UniProtKB/Swiss-Prot
  RTKN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:20166 UniProtKB/Swiss-Prot
MGD MGI:107371 ENTREZGENE
NCBI Gene 20166 ENTREZGENE
PANTHER PTHR21538:SF19 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Anillin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Rtkn PhenoGen
PROSITE REM_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART Hr1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SM00233 UniProtKB/Swiss-Prot
UniProt A0A1D5RLJ9_MOUSE UniProtKB/TrEMBL
  D3YXC9_MOUSE UniProtKB/TrEMBL
  D3Z4N1_MOUSE UniProtKB/TrEMBL
  D3Z7S7_MOUSE UniProtKB/TrEMBL
  Q8C6B2 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary E9QM24 UniProtKB/Swiss-Prot
  Q61192 UniProtKB/Swiss-Prot
  Q8VIG7 UniProtKB/Swiss-Prot