Shisa5 (shisa family member 5) - Rat Genome Database
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Gene: Shisa5 (shisa family member 5) Mus musculus
Analyze
Symbol: Shisa5
Name: shisa family member 5
RGD ID: 1619194
MGI Page MGI
Description: Predicted to have WW domain binding activity. Involved in intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator. Localizes to endoplasmic reticulum and nuclear envelope. Is expressed in chorion; extraembryonic ectoderm; foregut diverticulum; and yolk sac. Orthologous to human SHISA5 (shisa family member 5); PARTICIPATES IN p53 signaling pathway; INTERACTS WITH 1,2-dimethylhydrazine; 17alpha-ethynylestradiol; 17beta-estradiol.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: 2310008D10Rik; 6430628I05Rik; mShisa5; protein shisa-5; Sc; Scotin; shisa homolog 5
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399108,867,635 - 108,886,860 (+)NCBIGRCm39mm39
GRCm389109,038,567 - 109,057,792 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9109,038,565 - 109,057,777 (+)EnsemblGRCm38mm10GRCm38
MGSCv379108,941,141 - 108,960,280 (+)NCBIGRCm37mm9NCBIm37
MGSCv369108,896,033 - 108,915,172 (+)NCBImm8
Celera9108,597,405 - 108,616,548 (+)NCBICelera
Cytogenetic Map9F2NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12135983   PMID:12466851   PMID:12477932   PMID:12904583   PMID:14610273   PMID:15782199  
PMID:16141072   PMID:16141073   PMID:17481602   PMID:17889823   PMID:18164684   PMID:18677103   PMID:18799693   PMID:21267068   PMID:21873635  


Genomics

Comparative Map Data
Shisa5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399108,867,635 - 108,886,860 (+)NCBIGRCm39mm39
GRCm389109,038,567 - 109,057,792 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9109,038,565 - 109,057,777 (+)EnsemblGRCm38mm10GRCm38
MGSCv379108,941,141 - 108,960,280 (+)NCBIGRCm37mm9NCBIm37
MGSCv369108,896,033 - 108,915,172 (+)NCBImm8
Celera9108,597,405 - 108,616,548 (+)NCBICelera
Cytogenetic Map9F2NCBI
SHISA5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl348,467,798 - 48,504,826 (-)EnsemblGRCh38hg38GRCh38
GRCh38348,467,876 - 48,504,810 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37348,509,197 - 48,542,259 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36348,484,201 - 48,516,665 (-)NCBINCBI36hg18NCBI36
Celera348,460,056 - 48,497,388 (-)NCBI
Cytogenetic Map3p21.31NCBI
HuRef348,563,227 - 48,600,722 (-)NCBIHuRef
CHM1_1348,461,497 - 48,494,529 (-)NCBICHM1_1
Shisa5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.28109,691,476 - 109,706,409 (+)NCBI
Rnor_6.0 Ensembl8117,780,891 - 117,795,919 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.08117,780,992 - 117,795,923 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.08117,132,759 - 117,147,668 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48114,068,670 - 114,071,301 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.18114,088,124 - 114,090,755 (+)NCBI
Celera8108,995,220 - 108,997,851 (+)NCBICelera
Cytogenetic Map8q32NCBI
Shisa5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_004955532535,992 - 544,542 (-)NCBIChiLan1.0ChiLan1.0
SHISA5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1349,471,604 - 49,508,840 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl349,471,604 - 49,508,840 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0348,389,924 - 48,426,064 (-)NCBIMhudiblu_PPA_v0panPan3
SHISA5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl2040,601,626 - 40,623,601 (+)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.12040,604,183 - 40,624,607 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Shisa5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_004936529266,671 - 292,103 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SHISA5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1331,180,844 - 31,205,731 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11331,180,844 - 31,205,724 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21334,877,003 - 34,885,569 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SHISA5
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1229,871,882 - 9,905,733 (-)NCBI
Shisa5
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247302,416,486 - 2,448,836 (-)NCBI

Position Markers
RH131155  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm389109,057,461 - 109,057,641UniSTSGRCm38
MGSCv379108,959,975 - 108,960,155UniSTSGRCm37
Celera9108,616,243 - 108,616,423UniSTS
Cytogenetic Map9F2UniSTS
AU041952  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm389109,057,990 - 109,058,100UniSTSGRCm38
MGSCv379108,960,504 - 108,960,614UniSTSGRCm37
Celera9108,616,772 - 108,616,882UniSTS
Cytogenetic Map9F2UniSTS
Whitehead/MRC_RH91110.61UniSTS
UniSTS:236254  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm389109,057,954 - 109,058,153UniSTSGRCm38
MGSCv379108,960,468 - 108,960,667UniSTSGRCm37
Celera9108,616,736 - 108,616,935UniSTS
Cytogenetic Map9F2UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
13207569Tcq13_mtotal cholesterol QTL 13 (mouse)959990000109260000Mouse
4141833W10q13_mweight 10 weeks QTL 13 (mouse)Not determined63332429120362868Mouse
4141545Tailaq2_mtail length adjusted QTL 2 (mouse)Not determined63332429120362868Mouse
1357635Splq4_mspleen weight QTL 4 (mouse)Not determined963332429120362868Mouse
1302065El1_mepilepsy 1 (mouse)Not determined975775364114474379Mouse
10054492El7_mepilepsy 7 (mouse)Not determined975775364114474379Mouse
1301407Rapop2_mradiation-induced apoptosis 2 (mouse)Not determined976535936110536130Mouse
1301192Skts6_mskin tumor susceptibility 6 (mouse)Not determined978640645112640755Mouse
10401247Bglu14_mblood glucose level 14 (mouse)Not determined979397810113397888Mouse
1301732Char1_mP. chabaudi malaria resistance QTL 1 (mouse)Not determined981798268115798392Mouse
1300884Sluc11_msusceptibility to lung cancer 11 (mouse)Not determined982910333116910428Mouse
1357461Idd2_minsulin dependent diabetes susceptibility 2 (mouse)Not determined982910333116910428Mouse
10766454Char10_mP. chabaudi malaria resistance QTL 10 (mouse)982910333116910428Mouse
1301487Nociq1_mnociceptive sensitivity inflammatory QTL 1 (mouse)Not determined984528818118528921Mouse
1300549Bbaa17_mB. burgdorferi-associated arthritis 17 (mouse)Not determined986230401120230530Mouse
1302103Dob2_mdietary obesity 2 (mouse)Not determined986239845120289624Mouse
11251716Siim2_mstress induced immobility 2 (mouse)986748483120748483Mouse
12880422V25Dq6_mvitamin D inactive form serum level QTL 6 (mouse)987800000121800000Mouse
10412242Alpq8_malcohol preference QTL 8 (mouse)Not determined989284925123284925Mouse
1301649Psl1_mpromotion susceptibility QTL 1 (mouse)Not determined989412277123412396Mouse
18182932Metl3_mmetabolite locus 3, N-acetylglutamate (mouse)989563342123563342Mouse
1357657Pymr_mPlasmodium yoelli malaria resistance (mouse)Not determined989977005118938021Mouse
12910770Splic1_mspleen iron content 1 (mouse)991413879124595110Mouse
12910772Lvic6_mliver iron content 6 (mouse)991413879124595110Mouse
12910773Splic3_mspleen iron content 3 (mouse)991413879124595110Mouse
1558767Skmw11_mskeletal muscle weight 11 (mouse)Not determined991641084124595110Mouse
13463474Hbbcq5_mhemoglobin concentration QTL 5 (mouse)991641084124595110Mouse
13463475Hctq7_mhematocrit QTL 7 (mouse)991641084124595110Mouse
13463477Rbc9_mred blood cell count 9 (mouse)991641084124595110Mouse
13463478Mchq18_mmean corpuscular hemoglobin QTL 18 (mouse)991641084124595110Mouse
13463480Mchcq2_mmean corpuscular hemoglobin concentration QTL 2 (mouse)991641084124595110Mouse
12904937Edlmmq9_mextensor digitorum longus muscle mass QTL 9 (mouse)991683173124595110Mouse
12904947Tammq7_mtibialis anterior muscle mass QTL 7 (mouse)991683173124595110Mouse
12904961Gmmq7_mgastrocnemius muscle mass QTL 7 (mouse)991683173124595110Mouse
1302001Bdln5_mbody length 5 (mouse)Not determined993762590124595110Mouse
1301484Bwq6_mbody weight (mouse)Not determined993762590124595110Mouse
14746992Manh67_mmandible shape 67 (mouse)994036768124595110Mouse
11081166Psl5_mpromotion susceptibility QTL 5 (mouse)994981301112872929Mouse
11537364Cnes5_mC. neoformans susceptibility locus 5 (mouse)996917590124595110Mouse
1301297Lcho1_mliver cholesterol 1 (mouse)Not determined9101060861124595110Mouse
1357627Tgq2_mtriglyceride QTL 2 (mouse)Not determined9102000187124595110Mouse
1357648Obq18_mobesity QTL 18 (mouse)Not determined9102000187124595110Mouse
1301789Pbwg4_mpostnatal body weight growth 4 (mouse)Not determined9103289445124595110Mouse
10412290Pvacm1l_mplasma vascular cell adhesion molecule 1 levels (mouse)Not determined9103289445124595110Mouse
12879896Berr3_mberghei resistance locus 3 (mouse)9103289445124595110Mouse
13515058Adip20d_madiposity 20d (mouse)9108915010118915010Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:4807
Count of miRNA genes:732
Interacting mature miRNAs:951
Transcripts:ENSMUST00000026737, ENSMUST00000059097, ENSMUST00000112059, ENSMUST00000120218, ENSMUST00000120305, ENSMUST00000124432, ENSMUST00000127969, ENSMUST00000128976, ENSMUST00000135942, ENSMUST00000137282, ENSMUST00000143754, ENSMUST00000151141, ENSMUST00000152771, ENSMUST00000154113, ENSMUST00000154184, ENSMUST00000155541
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001284332 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001357932 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001357933 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001357934 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001357935 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001357936 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001357937 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001357939 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001357940 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001357941 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_025858 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_026381 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006512212 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030244506 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030244508 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AA088083 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC140383 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC174646 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF520699 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AH011687 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK009225 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK018291 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK020877 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK033545 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK045368 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK081060 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK088188 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK090357 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK090373 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK150460 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK151632 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK178622 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK182311 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK183004 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK184395 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK205406 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK207879 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK212074 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK219265 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC010238 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC017600 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC057089 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BF731565 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466560 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000026737   ⟹   ENSMUSP00000026737
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9109,038,585 - 109,057,724 (+)Ensembl
RefSeq Acc Id: ENSMUST00000112059   ⟹   ENSMUSP00000107690
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9109,038,565 - 109,057,777 (+)Ensembl
RefSeq Acc Id: ENSMUST00000154184   ⟹   ENSMUSP00000128901
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9109,054,863 - 109,057,207 (+)Ensembl
RefSeq Acc Id: ENSMUST00000196954   ⟹   ENSMUSP00000143599
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9109,051,198 - 109,057,013 (+)Ensembl
RefSeq Acc Id: ENSMUST00000197099   ⟹   ENSMUSP00000143648
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9109,040,416 - 109,056,743 (+)Ensembl
RefSeq Acc Id: ENSMUST00000197194
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9109,055,012 - 109,056,491 (+)Ensembl
RefSeq Acc Id: ENSMUST00000197483   ⟹   ENSMUSP00000143613
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9109,051,202 - 109,056,731 (+)Ensembl
RefSeq Acc Id: ENSMUST00000197689   ⟹   ENSMUSP00000142874
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9109,051,180 - 109,056,352 (+)Ensembl
RefSeq Acc Id: ENSMUST00000198281   ⟹   ENSMUSP00000143581
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9109,040,606 - 109,051,390 (+)Ensembl
RefSeq Acc Id: ENSMUST00000198295   ⟹   ENSMUSP00000143721
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9109,051,211 - 109,056,374 (+)Ensembl
RefSeq Acc Id: ENSMUST00000198376   ⟹   ENSMUSP00000143374
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9109,051,200 - 109,056,411 (+)Ensembl
RefSeq Acc Id: ENSMUST00000198591
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9109,052,854 - 109,056,702 (+)Ensembl
RefSeq Acc Id: ENSMUST00000198639
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9109,038,602 - 109,057,724 (+)Ensembl
RefSeq Acc Id: ENSMUST00000198708   ⟹   ENSMUSP00000142978
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9109,051,096 - 109,056,955 (+)Ensembl
RefSeq Acc Id: ENSMUST00000199288
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9109,055,940 - 109,056,475 (+)Ensembl
RefSeq Acc Id: ENSMUST00000199868   ⟹   ENSMUSP00000142867
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9109,051,435 - 109,056,858 (+)Ensembl
RefSeq Acc Id: ENSMUST00000200366
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9109,054,948 - 109,056,551 (+)Ensembl
RefSeq Acc Id: ENSMUST00000200515   ⟹   ENSMUSP00000142835
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9109,051,159 - 109,057,024 (+)Ensembl
RefSeq Acc Id: ENSMUST00000200629   ⟹   ENSMUSP00000142404
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9109,051,155 - 109,056,378 (+)Ensembl
RefSeq Acc Id: NM_001284332   ⟹   NP_001271261
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399108,867,635 - 108,886,860 (+)NCBI
GRCm389109,038,567 - 109,057,792 (+)NCBI
Celera9108,597,345 - 108,616,574 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001357932   ⟹   NP_001344861
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399108,869,482 - 108,886,860 (+)NCBI
GRCm389109,040,414 - 109,057,792 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001357933   ⟹   NP_001344862
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399108,880,225 - 108,886,860 (+)NCBI
GRCm389109,051,157 - 109,057,792 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001357934   ⟹   NP_001344863
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399108,881,922 - 108,886,860 (+)NCBI
GRCm389109,052,854 - 109,057,792 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001357935   ⟹   NP_001344864
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399108,880,164 - 108,886,860 (+)NCBI
GRCm389109,051,096 - 109,057,792 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001357936   ⟹   NP_001344865
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399108,880,225 - 108,886,860 (+)NCBI
GRCm389109,051,157 - 109,057,792 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001357937   ⟹   NP_001344866
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399108,880,225 - 108,886,860 (+)NCBI
GRCm389109,051,157 - 109,057,792 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001357939   ⟹   NP_001344868
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399108,880,225 - 108,886,860 (+)NCBI
GRCm389109,051,157 - 109,057,792 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001357940   ⟹   NP_001344869
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399108,880,225 - 108,886,860 (+)NCBI
GRCm389109,051,157 - 109,057,792 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001357941   ⟹   NP_001344870
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399108,880,225 - 108,886,860 (+)NCBI
GRCm389109,051,157 - 109,057,792 (+)NCBI
Sequence:
RefSeq Acc Id: NM_025858   ⟹   NP_080134
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399108,867,635 - 108,886,860 (+)NCBI
GRCm389109,038,567 - 109,057,792 (+)NCBI
MGSCv379108,941,141 - 108,960,280 (+)RGD
Celera9108,597,345 - 108,616,574 (+)NCBI
cM Map9 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_026381   ⟹   NP_080657
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399108,883,934 - 108,886,860 (+)NCBI
GRCm389109,054,866 - 109,057,792 (+)NCBI
MGSCv379108,941,141 - 108,960,280 (+)RGD
Celera9108,597,345 - 108,616,574 (+)NCBI
cM Map9 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006512212   ⟹   XP_006512275
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399108,883,930 - 108,886,792 (+)NCBI
GRCm389109,054,862 - 109,057,724 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030244506   ⟹   XP_030100366
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399108,880,200 - 108,886,792 (+)NCBI
GRCm389109,051,132 - 109,057,724 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030244508   ⟹   XP_030100368
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399108,880,169 - 108,886,792 (+)NCBI
GRCm389109,051,064 - 109,057,724 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001271261 (Get FASTA)   NCBI Sequence Viewer  
  NP_001344861 (Get FASTA)   NCBI Sequence Viewer  
  NP_001344862 (Get FASTA)   NCBI Sequence Viewer  
  NP_001344863 (Get FASTA)   NCBI Sequence Viewer  
  NP_001344864 (Get FASTA)   NCBI Sequence Viewer  
  NP_001344865 (Get FASTA)   NCBI Sequence Viewer  
  NP_001344866 (Get FASTA)   NCBI Sequence Viewer  
  NP_001344868 (Get FASTA)   NCBI Sequence Viewer  
  NP_001344869 (Get FASTA)   NCBI Sequence Viewer  
  NP_001344870 (Get FASTA)   NCBI Sequence Viewer  
  NP_080134 (Get FASTA)   NCBI Sequence Viewer  
  NP_080657 (Get FASTA)   NCBI Sequence Viewer  
  XP_006512275 (Get FASTA)   NCBI Sequence Viewer  
  XP_030100366 (Get FASTA)   NCBI Sequence Viewer  
  XP_030100368 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH10238 (Get FASTA)   NCBI Sequence Viewer  
  AAH17600 (Get FASTA)   NCBI Sequence Viewer  
  AAH57089 (Get FASTA)   NCBI Sequence Viewer  
  AAM74233 (Get FASTA)   NCBI Sequence Viewer  
  AAM74234 (Get FASTA)   NCBI Sequence Viewer  
  BAB26148 (Get FASTA)   NCBI Sequence Viewer  
  BAB31149 (Get FASTA)   NCBI Sequence Viewer  
  BAB32237 (Get FASTA)   NCBI Sequence Viewer  
  BAC28350 (Get FASTA)   NCBI Sequence Viewer  
  BAC32331 (Get FASTA)   NCBI Sequence Viewer  
  BAC38125 (Get FASTA)   NCBI Sequence Viewer  
  BAC40197 (Get FASTA)   NCBI Sequence Viewer  
  BAC41183 (Get FASTA)   NCBI Sequence Viewer  
  BAC41188 (Get FASTA)   NCBI Sequence Viewer  
  EDL21329 (Get FASTA)   NCBI Sequence Viewer  
  EDL21330 (Get FASTA)   NCBI Sequence Viewer  
  EDL21331 (Get FASTA)   NCBI Sequence Viewer  
  EDL21332 (Get FASTA)   NCBI Sequence Viewer  
  EDL21333 (Get FASTA)   NCBI Sequence Viewer  
  EDL21334 (Get FASTA)   NCBI Sequence Viewer  
  EDL21335 (Get FASTA)   NCBI Sequence Viewer  
  EDL21336 (Get FASTA)   NCBI Sequence Viewer  
  EDL21337 (Get FASTA)   NCBI Sequence Viewer  
  Q9D7I0 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_080134   ⟸   NM_025858
- Peptide Label: isoform 1 precursor
- UniProtKB: Q9D7I0 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_080657   ⟸   NM_026381
- Peptide Label: isoform 2
- UniProtKB: Q9D7I0 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001271261   ⟸   NM_001284332
- Peptide Label: isoform 3 precursor
- UniProtKB: Q9D7I0 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006512275   ⟸   XM_006512212
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: NP_001344861   ⟸   NM_001357932
- Peptide Label: isoform 4
RefSeq Acc Id: XP_030100368   ⟸   XM_030244508
- Peptide Label: isoform X2
RefSeq Acc Id: NP_001344864   ⟸   NM_001357935
- Peptide Label: isoform 7
RefSeq Acc Id: XP_030100366   ⟸   XM_030244506
- Peptide Label: isoform X2
RefSeq Acc Id: NP_001344862   ⟸   NM_001357933
- Peptide Label: isoform 5
RefSeq Acc Id: NP_001344866   ⟸   NM_001357937
- Peptide Label: isoform 7
RefSeq Acc Id: NP_001344870   ⟸   NM_001357941
- Peptide Label: isoform 7
RefSeq Acc Id: NP_001344865   ⟸   NM_001357936
- Peptide Label: isoform 7
RefSeq Acc Id: NP_001344868   ⟸   NM_001357939
- Peptide Label: isoform 7
RefSeq Acc Id: NP_001344869   ⟸   NM_001357940
- Peptide Label: isoform 7
RefSeq Acc Id: NP_001344863   ⟸   NM_001357934
- Peptide Label: isoform 6
RefSeq Acc Id: ENSMUSP00000142978   ⟸   ENSMUST00000198708
RefSeq Acc Id: ENSMUSP00000143581   ⟸   ENSMUST00000198281
RefSeq Acc Id: ENSMUSP00000143721   ⟸   ENSMUST00000198295
RefSeq Acc Id: ENSMUSP00000143374   ⟸   ENSMUST00000198376
RefSeq Acc Id: ENSMUSP00000143613   ⟸   ENSMUST00000197483
RefSeq Acc Id: ENSMUSP00000143648   ⟸   ENSMUST00000197099
RefSeq Acc Id: ENSMUSP00000026737   ⟸   ENSMUST00000026737
RefSeq Acc Id: ENSMUSP00000142874   ⟸   ENSMUST00000197689
RefSeq Acc Id: ENSMUSP00000142867   ⟸   ENSMUST00000199868
RefSeq Acc Id: ENSMUSP00000107690   ⟸   ENSMUST00000112059
RefSeq Acc Id: ENSMUSP00000128901   ⟸   ENSMUST00000154184
RefSeq Acc Id: ENSMUSP00000143599   ⟸   ENSMUST00000196954
RefSeq Acc Id: ENSMUSP00000142404   ⟸   ENSMUST00000200629
RefSeq Acc Id: ENSMUSP00000142835   ⟸   ENSMUST00000200515

Promoters
RGD ID:6845150
Promoter ID:MM_KWN:58843
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day3,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:OTTMUST00000078306,   UC009RRM.1,   UC009RRN.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv369108,940,979 - 108,941,479 (+)MPROMDB
RGD ID:6845142
Promoter ID:MM_KWN:58844
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Kidney
Transcripts:ENSMUST00000120218,   OTTMUST00000078297
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv369108,942,006 - 108,943,457 (+)MPROMDB
RGD ID:6845149
Promoter ID:MM_KWN:58845
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_4Hour,   Lung
Transcripts:OTTMUST00000078298,   OTTMUST00000078299,   OTTMUST00000078301,   OTTMUST00000078302,   OTTMUST00000078310,   OTTMUST00000078311,   UC009RRO.1,   UC009RRP.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv369108,953,661 - 108,954,161 (+)MPROMDB
RGD ID:6845143
Promoter ID:MM_KWN:58846
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Kidney,   Lung,   Spleen
Transcripts:OTTMUST00000078303
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv369108,955,256 - 108,955,756 (+)MPROMDB
RGD ID:6845144
Promoter ID:MM_KWN:58847
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:OTTMUST00000078304,   OTTMUST00000078305,   OTTMUST00000078307
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv369108,956,586 - 108,957,647 (+)MPROMDB
RGD ID:6848494
Promoter ID:MM_ACW:52073
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   Spleen
Transcripts:SCOTIN.PSEP07
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv369108,957,976 - 108,958,727 (+)MPROMDB
RGD ID:8670946
Promoter ID:EPDNEW_M13504
Type:initiation region
Name:Shisa5_1
Description:Mus musculus shisa family member 5 , transcript variant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M13505  EPDNEW_M13506  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm389109,038,600 - 109,038,660EPDNEW
RGD ID:8670948
Promoter ID:EPDNEW_M13505
Type:initiation region
Name:Shisa5_2
Description:Mus musculus shisa family member 5 , transcript variant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M13504  EPDNEW_M13506  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm389109,051,211 - 109,051,271EPDNEW
RGD ID:8670950
Promoter ID:EPDNEW_M13506
Type:initiation region
Name:Shisa5_3
Description:Mus musculus shisa family member 5 , transcript variant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M13504  EPDNEW_M13505  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm389109,054,927 - 109,054,987EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1915044 AgrOrtholog
Ensembl Genes ENSMUSG00000025647 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000026737 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000107690 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000128901 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000142404 UniProtKB/TrEMBL
  ENSMUSP00000142835 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000142867 UniProtKB/TrEMBL
  ENSMUSP00000142874 UniProtKB/TrEMBL
  ENSMUSP00000142978 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSP00000143374 UniProtKB/TrEMBL
  ENSMUSP00000143581 UniProtKB/TrEMBL
  ENSMUSP00000143599 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSP00000143613 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSP00000143648 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSP00000143721 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000026737 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000112059 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000154184 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000196954 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUST00000197099 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUST00000197483 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUST00000197689 UniProtKB/TrEMBL
  ENSMUST00000198281 UniProtKB/TrEMBL
  ENSMUST00000198295 UniProtKB/TrEMBL
  ENSMUST00000198376 UniProtKB/TrEMBL
  ENSMUST00000198708 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUST00000199868 UniProtKB/TrEMBL
  ENSMUST00000200515 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000200629 UniProtKB/TrEMBL
InterPro Shisa UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:66940 UniProtKB/Swiss-Prot
MGD MGI:1915044 ENTREZGENE
NCBI Gene 66940 ENTREZGENE
PANTHER PTHR31395 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Shisa UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Shisa5 PhenoGen
UniProt A0A0G2JDK5_MOUSE UniProtKB/TrEMBL
  A0A0G2JER0_MOUSE UniProtKB/TrEMBL
  A0A0G2JER5_MOUSE UniProtKB/TrEMBL
  A0A0G2JG03_MOUSE UniProtKB/TrEMBL
  A0A0G2JGI8_MOUSE UniProtKB/TrEMBL
  A0A0G2JGK4_MOUSE UniProtKB/TrEMBL
  A0A0G2JGP8_MOUSE UniProtKB/TrEMBL
  A0A0G2JGW1_MOUSE UniProtKB/TrEMBL
  Q8BU09_MOUSE UniProtKB/TrEMBL
  Q9D7I0 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary Q8BJ86 UniProtKB/Swiss-Prot
  Q8BJ87 UniProtKB/Swiss-Prot
  Q8BLE9 UniProtKB/Swiss-Prot
  Q8K4W3 UniProtKB/Swiss-Prot
  Q91Z37 UniProtKB/Swiss-Prot
  Q9CQP5 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2014-10-21 Shisa5  shisa family member 5    shisa homolog 5 (Xenopus laevis)  Symbol and/or name change 5135510 APPROVED