Babam1 (BRISC and BRCA1 A complex member 1)

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Gene: Babam1 (BRISC and BRCA1 A complex member 1) Mus musculus

Analyze

Symbol:

Babam1

Name:

BRISC and BRCA1 A complex member 1

RGD ID:

1619174

MGI Page

MGI

Description:

Involved in hematopoietic stem cell proliferation. Predicted to localize to cytosol and nucleus. Orthologous to human BABAM1 (BRISC and BRCA1 A complex member 1); INTERACTS WITH sodium fluoride; 3,4-methylenedioxymethamphetamine (ortholog); arsenous acid (ortholog).

Type:

protein-coding

RefSeq Status:

VALIDATED

Also known as:

5430437P03Rik; BRCA1-A complex subunit MERIT40; BRISC and BRCA1-A complex member 1; mediator of RAP80 interactions and targeting subunit of 40 kDa; Merit40; new component of the BRCA1-A complex

RGD Orthologs

Human

Rat

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

Latest Assembly:

GRCm38 - Mouse Genome Assembly GRCm38

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	8	71,848,809 - 71,857,416 (+)	NCBI	GRCm39		mm39
GRCm38	8	71,396,165 - 71,404,772 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	8	71,396,861 - 71,404,619 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	8	73,920,754 - 73,928,671 (+)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	8	74,325,857 - 74,333,534 (+)	NCBI			mm8
Celera	8	73,921,564 - 73,929,453 (+)	NCBI		Celera
Cytogenetic Map	8	B3.3	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Ovarian Neoplasms (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

3,4-methylenedioxymethamphetamine (ISO)

arsenous acid (ISO)

benzo[a]pyrene (ISO)

bisphenol A (ISO)

cadmium dichloride (ISO)

cyclosporin A (ISO)

diarsenic trioxide (ISO)

doxorubicin (ISO)

enzyme inhibitor (ISO)

flutamide (ISO)

glafenine (ISO)

sodium fluoride (EXP)

tert-butyl hydroperoxide (ISO)

vitamin E (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cell division (IEA)

cellular response to DNA damage stimulus (IEA)

chromatin organization (IEA)

DNA repair (IEA)

double-strand break repair (ISO)

hematopoietic stem cell proliferation (IMP)

positive regulation of DNA repair (ISO)

protein K63-linked deubiquitination (ISO)

response to ionizing radiation (ISO)

signal transduction involved in G2 DNA damage checkpoint (ISO)

Cellular Component

BRCA1-A complex (ISO)

BRISC complex (ISO)

cytoplasm (ISO)

cytosol (ISO)

nuclear body (ISO)

nucleoplasm (ISO)

nucleus (ISO)

Molecular Function

molecular_function (ND)

protein binding (ISO)

References

References - curated


1.	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2.	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:8889548	PMID:10349636	PMID:11042159	PMID:11076861	PMID:11125038	PMID:11217851	PMID:12466851	PMID:12477932	PMID:14610273	PMID:15782199	PMID:16141072	PMID:16141073
PMID:21267068	PMID:25636339	PMID:26338419	PMID:28190767	PMID:29676259	PMID:30755420	PMID:32325033

Genomics

Comparative Map Data

Babam1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	8	71,848,809 - 71,857,416 (+)	NCBI	GRCm39		mm39
GRCm38	8	71,396,165 - 71,404,772 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	8	71,396,861 - 71,404,619 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	8	73,920,754 - 73,928,671 (+)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	8	74,325,857 - 74,333,534 (+)	NCBI			mm8
Celera	8	73,921,564 - 73,929,453 (+)	NCBI		Celera
Cytogenetic Map	8	B3.3	NCBI

BABAM1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38.p13 Ensembl	19	17,267,376 - 17,281,249 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh38.p13 Ensembl	19	17,267,418 - 17,282,966 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh38	19	17,267,443 - 17,279,337 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh37	19	17,378,200 - 17,390,162 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	19	17,239,232 - 17,251,162 (+)	NCBI	NCBI36		hg18	NCBI36
Celera	19	17,279,989 - 17,291,905 (+)	NCBI
Cytogenetic Map	19	p13.11	NCBI
HuRef	19	16,945,293 - 16,956,825 (+)	NCBI		HuRef
CHM1_1	19	17,377,658 - 17,389,627 (+)	NCBI		CHM1_1

Babam1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rnor_6.0	16	19,792,720 - 19,798,886 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	16	19,792,838 - 19,798,894 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	16	19,652,945 - 19,659,019 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	16	18,558,063 - 18,564,094 (+)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	16	18,558,060 - 18,564,091 (+)	NCBI
Celera	16	18,274,474 - 18,280,505 (+)	NCBI		Celera
Cytogenetic Map	16	p14	NCBI

Babam1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955524	937,815 - 944,456 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955524	939,250 - 944,457 (-)	NCBI	ChiLan1.0	ChiLan1.0

BABAM1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	19	17,729,538 - 17,742,447 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	19	17,729,568 - 17,742,447 (+)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	19	16,755,518 - 16,767,634 (+)	NCBI	Mhudiblu_PPA_v0		panPan3

BABAM1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1 Ensembl	20	45,466,805 - 45,473,009 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
CanFam3.1	20	45,466,808 - 45,474,953 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1

Babam1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
SpeTri2.0	NW_004936596	3,574,507 - 3,582,370 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

BABAM1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	2	60,398,191 - 60,407,557 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	2	60,398,170 - 60,407,742 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

BABAM1
(Chlorocebus sabaeus - African green monkey)

Vervet Assembly	Chr	Position (strand)	Source	Genome Browsers
Vervet Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1 Ensembl	6	15,775,229 - 15,786,822 (+)	Ensembl
ChlSab1.1	6	15,775,344 - 15,786,715 (+)	NCBI

Babam1
(Heterocephalus glaber - naked mole-rat)

Molerat Assembly	Chr	Position (strand)	Source	Genome Browsers
Molerat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624908	654,886 - 660,589 (-)	NCBI

Position Markers

STS-D80227

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	8	71,403,459 - 71,404,684	UniSTS	GRCm38
GRCm38	1	38,214,357 - 38,214,524	UniSTS	GRCm38
MGSCv37	8	73,927,358 - 73,928,583	UniSTS	GRCm37
MGSCv37	1	38,271,202 - 38,271,369	UniSTS	GRCm37
Celera	1	37,990,066 - 37,990,233	UniSTS
Celera	8	73,928,140 - 73,929,365	UniSTS
Cytogenetic Map	8	C1	UniSTS
Cytogenetic Map	1	B	UniSTS
cM Map	1	18.7	UniSTS

QTLs in Region (GRCm38)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
4140967	Bmd39_m	bone mineral density 39 (mouse)			Not determined		8	32016544	117238700	Mouse
1558875	Eae31_m	experimental allergic encephalomyelitis susceptibility 31 (mouse)			Not determined		8	34642776	114837007	Mouse
1301013	Capsq4_m	capsaicin sensitivity related QTL 4 (mouse)			Not determined		8	36163000	92728652	Mouse
27226754	Femd6_m	femur midshaft diameter 6, 10 week (mouse)					8	37400000	109600000	Mouse
12904744	Carcdq1_m	cardiac collagen deposition QTL 1 (mouse)					8	39709256	94689598	Mouse
1301544	Iba3_m	induction of brown adipocytes 3 (mouse)			Not determined		8	44294880	78295025	Mouse
1301717	Adip4_m	adiposity 4 (mouse)			Not determined		8	47637030	81637146	Mouse
10766453	Char11_m	P. chabaudi malaria resistance QTL 11 (mouse)					8	47637030	81637146	Mouse
1301441	Skull11_m	skull morphology 11 (mouse)			Not determined		8	47737134	81737254	Mouse
1357715	Alaa3_m	alopecia areata 3 (mouse)			Not determined		8	48792939	82793021	Mouse
14746987	Manh64_m	mandible shape 64 (mouse)					8	50053306	84053306	Mouse
14747005	Mancz7_m	mandible centroid size 7 (mouse)					8	50053306	84053306	Mouse
14700686	Civq3_m	cerebral infarct volume QTL 3 (mouse)					8	51882191	85882191	Mouse
1301506	Aevm1_m	autoimmune extremity vasculitis in MRL mice 1 (mouse)			Not determined		8	54287817	88287993	Mouse
1301952	Im3_m	immunoregulatory 3 (mouse)			Not determined		8	54706614	88706763	Mouse
10412287	Carg3_m	Candida albicans resistance gene 3 (mouse)			Not determined		8	55545028	89545028	Mouse
11353828	Gf7_m	gonadal fat pad weight 7 (mouse)					8	58201479	92201479	Mouse
10043975	Obq31_m	obesity QTL 31 (mouse)			Not determined		8	58409776	92409776	Mouse
1301688	Orch6_m	autoimmune orchitis resistance 6 (mouse)			Not determined		8	60786850	94786976	Mouse
4141285	Tgq18_m	triglyceride QTL 18 (mouse)			Not determined			63460107	97460107	Mouse
4141797	Skmw16_m	skeletal muscle weight 16 (mouse)			Not determined		8	63939547	97939696	Mouse
1357787	Vtbt5_m	vertebral trabecular bone trait 5 (mouse)			Not determined		8	65357768	99357920	Mouse
10043992	Hbnr11_m	Heligmosomoides bakeri nematode resistance 11 (mouse)			Not determined		8	65600207	99600347	Mouse
10766466	Char12_m	P. chabaudi malaria resistance QTL 12 (mouse)					8	68269827	82600347	Mouse
1301767	Fcsa2_m	femoral cross-sectional area 2 (mouse)			Not determined		8	70305375	104305495	Mouse
4142283	Imraq2_m	immune response to AAV2 QTL 2 (mouse)			Not determined		8	70305375	104305495	Mouse
1558780	Idd22_m	insulin dependent diabetes susceptibility 22 (mouse)			Not determined		8	71102903	105103009	Mouse
4141395	Char2a_m	P. chabaudi malaria resistance QTL 2a (mouse)			Not determined			71136783	90202598	Mouse
4142023	W3q5_m	weight 3 weeks QTL 5 (mouse)			Not determined			71287817	123895615	Mouse
1357708	Orq1_m	ovulation rate QTL 1 (mouse)			Not determined		8	71287817	123895615	Mouse
1301872	Cd4ts3_m	CD4 T cell subset 3 (mouse)			Not determined		8	71396181	105396393	Mouse

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	129
Count of miRNA genes:	113
Interacting mature miRNAs:	120
Transcripts:	ENSMUST00000002473
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_026636	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_011242323	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017312947	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017312948	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC127416	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK003366	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK077402	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK078265	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK147083	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK183167	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK185503	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK195877	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK210692	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC005692	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH466569	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSMUST00000002473 ⟹ ENSMUSP00000002473

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38.p6 Ensembl	8	71,396,861 - 71,404,619 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000212087

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38.p6 Ensembl	8	71,402,784 - 71,403,332 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000212383

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38.p6 Ensembl	8	71,402,222 - 71,403,028 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000212769 ⟹ ENSMUSP00000148639

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38.p6 Ensembl	8	71,399,526 - 71,399,956 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000213093

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38.p6 Ensembl	8	71,398,422 - 71,399,994 (+)	Ensembl

RefSeq Acc Id:

NM_026636 ⟹ NP_080912

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	8	71,849,499 - 71,857,416 (+)	NCBI
GRCm38	8	71,396,855 - 71,404,772 (+)	NCBI
MGSCv37	8	73,920,754 - 73,928,671 (+)	RGD
Celera	8	73,921,564 - 73,929,453 (+)	RGD
cM Map	8		ENTREZGENE

Sequence:

show sequence

CTCGGCAGCGCCGCACAAACTTCCGGCCAGGAAGATGGCGGCTTCCTAGAGTCCTGATTGACTG
GCCGCGGTGCCCAGGCTACAGAGTGGAACCTGCGGCACTGTGAACGCGCGTGAGCTTTGTGTCG
CCGTGGTCTAACTTCGACCCGGATTGCTGTAGCTCCAGGCAGGATCCTGGCTTCCACTATCCCC
CCTTCATCTAACCACTCGGGAACCATGGAGGTGGCAGAGGCGAACAGCCCCACGGAGGAGGAGG
AAGAGGAGGAAGAAGAAGGAGAGGAGACGATATCAGAGCCCAGGCCTCACACTCGATCCAATCC
AGAGGGGGCTGAGGACCGGGCCCTGGGAGCTCAAGCCAGTGTGGGCAGCCGCAGCGAGGGCGAG
GGTGAGGCAGCCACTGCAGATGGCGGGGCAGCCAGTGTCCCAGGAGCCGGGCCTAAGCCCTGGC
AAGTACCAGCATCAGCATCTGAGGTCCAGATTCGAACACCAAGGGTCAACTGTCCAGAGAAGGT
GATCATCTGTCTGGATCTTTCGGAGGAGATGTCTGTGCCAAAGCTGGAGTCCTTTAATGGCTCT
AGGACAAACGCCCTGAATGTGTCTCAGAAGATGGTTGAGATGTTTGTTCGCACAAAGCACAAGA
TTGACAAGAGCCACGAATTTGCACTGGTTGTAGTGAATGACGACTCCGCCTGGCTGTCTGGCCT
GACCTCTGACCCACGTGAGCTCTGCAGCTGCCTGTATGACCTGGAGACGGCGTCCTGCTCCACC
TTCAATTTGGAAGGCCTCTTCAGCCTCATCCAGCAGAAGACCGAGCTGCCAGTCACAGAGAATG
TGCAAACCATCCCACCCCCCTATGTTGTGCGCACCATCCTGGTCTACAGCCGCCCACCCTGCCA
GCCCCAGTTTTCCCTGACTGAGCCCATGAAGAAGATGTTCCAGTGTCCCTACTTCTTCTTCGAC
ATCGTTTATATCCACAATGGCACTGAGGAGAAGGAAGAGGATATGAGCTGGAAGGACATGTTTG
CCTTCATGGGTAGCCTGGACACCAAGGGCGCCAGCTACAAGTATGAGGTAGCACTTGCTGGTCC
TGCCCTGGAGCTGCACAATTGCATGGCCAAGTTGCTGGCCCACCCGCTGCAAAGACCCTGCCAG
ACCCACGCGAGCTACAGCCTGCTGGAGGAGGACGAGGAGGCTGGAGAAGAGGAAGCCACTGTGT
GAACTATGACATGTGACATCTCCGCACCCTCCTATGAGGAGAGCGCAGGCACACTATTATTGGC
CCATGCTCAATCCCACTCTGTCCACTGTAAATTCATTCTTCCTGGGACTATTTTTGTCACCGGA
ATAAAAATCTGAGGTCCCTGAGCCCACCCTTGGTGTCACTTTGGGCTCACTGAGACCTGTTATT
AATGTCACAGAAAACAGGCACTAAACAAAGCAGTGGTGTATGGCTTCAGGCTCAGCTGTATCCG
AGTAACCCACAGGCTGGTGTTCACTGCGCTTTCCAAACTCCTCTTCATCCTACAGAACCCACTC
CAGATGTTCTTTTATCCAGAAAGTCCTCCAGAAACAGGGAAGATCTATTGAAAGTG

hide sequence

RefSeq Acc Id:

XM_011242323 ⟹ XP_011240625

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	8	71,849,473 - 71,853,616 (+)	NCBI
GRCm38	8	71,396,165 - 71,400,972 (+)	NCBI

Sequence:

show sequence

TCAGCATTTGCACAGCTTTTATTTTTCATTACTTTGCTTTACTCATCTTTGTCTGTGGTGGTCC
TACTTGTCTCCGAGATCGAACTCAGGCCCCTCAGGATTGGTGGCAAGAGCCTGCACCTGCTCAG
TAGCCCACAACGTTTCTCTTCAATGAGTCTGAACTGCTGCATCAGGCGGTTGGAGGCACTGGCA
ACAATAAGCTTGTCCACAGTGTGTCTGCTGCCTTCTTTACTTTTTCTTTACATTTTAGTTTTTA
TACAGCGTCTCATTTAGCCCAGCCTGGTCTAAACGCCCGATCTTCGTCTCCGGGTCTCTGGAGT
GTTGGGATGACAGGTGTGCACCACCAGTCCTCATCAAGATCACACCCACTCCCAGTATTACCCA
TCTTCAGCCCCATTCCAGCCACTCCAAGCCACACCCCCAGAACGCCTCAGCCTATCAGCTTCCA
TGTCCCGAGGGCCACTGAACTACATTTCCCAGAAGGTGTCTCGGCAGCGCCGCACAAACTTCCG
GCCAGGAAGATGGCGGCTTCCTAGAGTCCTGATTGACTGGCCGCGGTGCCCAGGCTACAGAGTG
GAACCTGCGGCACTGTGAACGCGCGTGAGCTTTGTGTCGCCGTGGTCTAACTTCGACCCGGATT
GCTGTAGCTCCAGGCAGGATCCTGGCTTCCACTATCCCCCCTTCATCTAACCACTCGGGAACCA
TGGAGGTGGCAGAGGCGAACAGCCCCACGGAGGAGGAGGAAGAGGAGGAAGAAGAAGGAGAGGA
GACGATATCAGAGCCCAGGCCTCACACTCGATCCAATCCAGAGGGGGCTGAGGACCGGGCCCTG
GGAGCTCAAGCCAGTGTGGGCAGCCGCAGCGAGGGCGAGGGTGAGGCAGCCACTGCAGATGGCG
GGGCAGCCAGTGTCCCAGGAGCCGGGCCTAAGCCCTGGCAAGTACCAGCATCAGCATCTGAGGT
CCAGATTCGAACACCAAGGGTCAACTGTCCAGAGAAGGTGATCATCTGTCTGGATCTTTCGGAG
GAGATGTCTGTGCCAAAGCTGGAGTCCTTTAATGGCTCTAGGACAAACGCCCTGAATGTGTCTC
AGAAGATGGTTGAGATGTTTGTTCGCACAAAGCACAAGATTGACAAGAGCCACGAATTTGCACT
GGTTGTAGTGAATGACGACTCCGCCTGGCTGTCTGGCCTGACCTCTGACCCACGTGAGCTCTGC
AGCTGCCTGTATGACCTGGAGACGGCGTCCTGCTCCACCTTCAAGCTTCAGAACCATGCCTTCA
ACTCCCCCCTCCAACTCGCCTCTCTCCCTTCTTCCACCTCCCCCCTTTCCCCCCCCCGCCTCTC
CTCCCTGTCTCCCCTTCCCCTGCCTCTCTCTCATGTTTATGAGTGCTATATCTGCATATATGTA
CCAGAGTCATCAGGTCCAAGTATAGATGGTTGTGAACCTTCATATGGTTGCTGAGAATTGAACT
CAGGACTGTGGAAGAGCAGTCAGTGTTCTTAGCCACTGAGCCATGTCTCTAGCACTGCCCTATA
ATTCTTTCATTTTTTTTTTAAAGATTTTATTTATTTATTTTTTTATATATATGATGAGTACGCT
GTTCAGAGACACCAGAAGAAGGCCCCAGATCCCATTACAGATGGTTGTGAGCCACCATGTGGTT
GCTGGGAATTGAACTCAGGACCTCTGGAAGAGCAGTCAATGCTCTTACCGCTGAGCCATCTCTC
CAGCCCAATTCTTTCATTTTCAATATTTATTGATTGAGATAGGATCTCTCTCATTATACAGCTG
TCTTGGAACTTACCCTGGACCAGGCTAGCTTCAAATTCACAGAGCTCAACTTGCCTCTGCCTTC
CAAGTGCTGGGGTTAAAGTCATGTGCCACCACCCGACATCAAATATGTAATTAATATATTTTTG
AGATTATTTCTCCTGTAGCTGAGGCTGGTCTTGAGTTCACAGTGTAACTAAGGATGAATGGCCT
TGAGCCTCTGGTCTGTCTGCTTCCACCTCCTACAGTGTTGGCATGAGGGTGTGTTGAGCACACT
GAGTAGCTACATGCGTGCTGAGCAAGTGCTCTAGTGACTGAGCCCAAGTCCCAGCAAACTGGGA
TCACAAATGGAGTATTCCATGTGTGGCATTCTAGGTGGAGTCACATTCAAAACCCACCACAGGG
AGGTGCTGGGGTACAGGAGTGTCAGCCCAGAGCTGAGGCAAGAGGGTTAGAAGTTCCAAGCCAG
CCTTAGCTACAAATCTAGACTCTTTCA

hide sequence

RefSeq Acc Id:

XM_017312947 ⟹ XP_017168436

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	8	71,848,809 - 71,857,195 (+)	NCBI
GRCm38	8	71,396,165 - 71,404,551 (+)	NCBI

Sequence:

show sequence

TCAGCATTTGCACAGCTTTTATTTTTCATTACTTTGCTTTACTCATCTTTGTCTGTGGTGGTCC
TACTTGTCTCCGAGATCGAACTCAGGCCCCTCAGGATTGGTGGCAAGAGCCTGCACCTGCTCAG
TAGCCCACAACGTTTCTCTTCAATGAGTCTGAACTGCTGCATCAGGCGGTTGGAGGCACTGGCA
ACAATAAGCTTGTCCACAGTGTGTCTGCTGCCTTCTTTACTTTTTCTTTACATTTTAGTTTTTA
TACAGCGTCTCATTTAGCCCAGCCTGGTCTAAACGCCCGATCTTCGTCTCCGGGTCTCTGGAGT
GTTGGGATGACAGGTGTGCACCACCAGTCCTCATCAAGATCACACCCACTCCCAGTATTACCCA
TCTTCAGCCCCATTCCAGCCACTCCAAGCCACACCCCCAGAACGCCTCAGCCTATCAGCTTCCA
TGTCCCGAGGGCCACTGAACTACATTTCCCAGAAGGTGTCTCGGCAGCGCCGCACAAACTTCCG
GCCAGGAAGATGGCGGCTTCCTAGAGTCCTGATTGACTGGCCGCGGTGCCCAGGCTACAGAGTG
GAACCTGCGGCACTGTGAACGCGCGTGAGCTTTGTGTCGCCGTGGTCTAACTTCGACCCGGATT
GCTGTAGCTCCAGGCAGGATCCTGGCTTCCACTATCCCCCCTTCATCTAACCACTCGGGAACCA
TGGAGGTGGCAGAGGCGAACAGCCCCACGGAGGAGGAGGAAGAGGAGGAAGAAGAAGGAGAGGA
GACGATATCAGAGCCCAGGCCTCACACTCGATCCAATCCAGAGGGGGCTGAGGACCGGGCCCTG
GGAGCTCAAGCCAGTGTGGGCAGCCGCAGCGAGGGCGAGGGTGAGGCAGCCACTGCAGATGGCG
GGGCAGCCAGTGTCCCAGGAGCCGGGCCTAAGCCCTGGCAAGTACCAGCATCAGCATCTGAGGT
CCAGATTCGAACACCAAGGGTCAACTGTCCAGAGAAGGTGATCATCTGTCTGGATCTTTCGGAG
GAGATGTCTGTGCCAAAGCTGGAGTCCTTTAATGGCTCTAGGACAAACGCCCTGAATGTGTCTC
AGAAGATGGTTGAGATGTTTGTTCGCACAAAGCACAAGATTGACAAGAGCCACGAATTTGCACT
GGTTGTAGTGAATGACGACTCCGCCTGGCTGTCTGGCCTGACCTCTGACCCACGTGAGCTCTGC
AGCTGCCTGTATGACCTGGAGACGGCGTCCTGCTCCACCTTCAATTTGGAAGGCCTCTTCAGCC
TCATCCAGCAGAAGACCGAGCTGCCAGTCACAGAGAATGTGCAAACCATCCCACCCCCCTATGT
TGTGCGCACCATCCTGGTCTACAGCCGCCCACCCTGCCAGCCCCAGTTTTCCCTGACTGAGCCC
ATGAAGAAGATGTTCCAGTGTCCCTACTTCTTCTTCGACATCGTTTATATCCACAATGGCACTG
AGGAGAAGGAAGAGGATATGAGCTGGAAGGACATGTTTGCCTTCATGGGTAGCCTGGACACCAA
GGGCGCCAGCTACAAGTATGAGGTAGCACTTGCTGGTCCTGCCCTGGAGCTGCACAATTGCATG
GCCAAGTTGCTGGCCCACCCGCTGCAAAGACCCTGCCAGACCCACGCGAGCTACAGCCTGCTGG
AGGAGGACGAGGAGGCTGGAGAAGAGGAAGCCACTGTGTGAACTATGACATGTGACATCTCCGC
ACCCTCCTATGAGGAGAGCGCAGGCACACTATTATTGGCCCATGCTCAATCCCACTCTGTCCAC
TGTAAATTCATTCTTCCTGGGACTATTTTTGTCACCGGAATAAAAATCTGAGGTCCCTGAGCCC
AC

hide sequence

RefSeq Acc Id:

XM_017312948 ⟹ XP_017168437

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	8	71,849,489 - 71,857,195 (+)	NCBI
GRCm38	8	71,396,841 - 71,404,551 (+)	NCBI

Sequence:

show sequence

TTCCCAGAAGGTGTCTCGGCAGCGCCGCACAAACTTCCGGCCAGGAAGATGGCGGCTTCCTAGA
GTCCTGATTGACTGGCCGCGGTGCCCAGGCTACAGAGTGGAACCTGCGGCACTGTGAACGCGCG
TGAGCTTTGTGTCGCCGTGGTCTAACTTCGACCCGGATTGCTGTAGCTCCAGGATCCTGGCTTC
CACTATCCCCCCTTCATCTAACCACTCGGGAACCATGGAGGTGGCAGAGGCGAACAGCCCCACG
GAGGAGGAGGAAGAGGAGGAAGAAGAAGGAGAGGAGACGATATCAGAGCCCAGGCCTCACACTC
GATCCAATCCAGAGGGGGCTGAGGACCGGGCCCTGGGAGCTCAAGCCAGTGTGGGCAGCCGCAG
CGAGGGCGAGGGTGAGGCAGCCACTGCAGATGGCGGGGCAGCCAGTGTCCCAGGAGCCGGGCCT
AAGCCCTGGCAAGTACCAGCATCAGCATCTGAGGTCCAGATTCGAACACCAAGGGTCAACTGTC
CAGAGAAGGTGATCATCTGTCTGGATCTTTCGGAGGAGATGTCTGTGCCAAAGCTGGAGTCCTT
TAATGGCTCTAGGACAAACGCCCTGAATGTGTCTCAGAAGATGGTTGAGATGTTTGTTCGCACA
AAGCACAAGATTGACAAGAGCCACGAATTTGCACTGGTTGTAGTGAATGACGACTCCGCCTGGC
TGTCTGGCCTGACCTCTGACCCACGTGAGCTCTGCAGCTGCCTGTATGACCTGGAGACGGCGTC
CTGCTCCACCTTCAATTTGGAAGGCCTCTTCAGCCTCATCCAGCAGAAGACCGAGCTGCCAGTC
ACAGAGAATGTGCAAACCATCCCACCCCCCTATGTTGTGCGCACCATCCTGGTCTACAGCCGCC
CACCCTGCCAGCCCCAGTTTTCCCTGACTGAGCCCATGAAGAAGATGTTCCAGTGTCCCTACTT
CTTCTTCGACATCGTTTATATCCACAATGGCACTGAGGAGAAGGAAGAGGATATGAGCTGGAAG
GACATGTTTGCCTTCATGGGTAGCCTGGACACCAAGGGCGCCAGCTACAAGTATGAGGTAGCAC
TTGCTGGTCCTGCCCTGGAGCTGCACAATTGCATGGCCAAGTTGCTGGCCCACCCGCTGCAAAG
ACCCTGCCAGACCCACGCGAGCTACAGCCTGCTGGAGGAGGACGAGGAGGCTGGAGAAGAGGAA
GCCACTGTGTGAACTATGACATGTGACATCTCCGCACCCTCCTATGAGGAGAGCGCAGGCACAC
TATTATTGGCCCATGCTCAATCCCACTCTGTCCACTGTAAATTCATTCTTCCTGGGACTATTTT
TGTCACCGGAATAAAAATCTGAGGTCCCTGAGCCCAC

hide sequence

Protein Sequences


Protein RefSeqs	NP_080912	(Get FASTA)	NCBI Sequence Viewer
	XP_011240625	(Get FASTA)	NCBI Sequence Viewer
	XP_017168436	(Get FASTA)	NCBI Sequence Viewer
	XP_017168437	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH05692	(Get FASTA)	NCBI Sequence Viewer
	BAB22740	(Get FASTA)	NCBI Sequence Viewer
	BAC36785	(Get FASTA)	NCBI Sequence Viewer
	BAC37197	(Get FASTA)	NCBI Sequence Viewer
	BAE27663	(Get FASTA)	NCBI Sequence Viewer
	EDL28915	(Get FASTA)	NCBI Sequence Viewer
	EDL28916	(Get FASTA)	NCBI Sequence Viewer
	Q3UI43	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:

NP_080912 ⟸ NM_026636

- UniProtKB:

Q3UI43 (UniProtKB/Swiss-Prot)

- Sequence:

show sequence

MEVAEANSPTEEEEEEEEEGEETISEPRPHTRSNPEGAEDRALGAQASVGSRSEGEGEAATADG
GAASVPGAGPKPWQVPASASEVQIRTPRVNCPEKVIICLDLSEEMSVPKLESFNGSRTNALNVS
QKMVEMFVRTKHKIDKSHEFALVVVNDDSAWLSGLTSDPRELCSCLYDLETASCSTFNLEGLFS
LIQQKTELPVTENVQTIPPPYVVRTILVYSRPPCQPQFSLTEPMKKMFQCPYFFFDIVYIHNGT
EEKEEDMSWKDMFAFMGSLDTKGASYKYEVALAGPALELHNCMAKLLAHPLQRPCQTHASYSLL
EEDEEAGEEEATV

hide sequence

RefSeq Acc Id:

XP_011240625 ⟸ XM_011242323

- Peptide Label:

isoform X2

- Sequence:

show sequence

MEVAEANSPTEEEEEEEEEGEETISEPRPHTRSNPEGAEDRALGAQASVGSRSEGEGEAATADG
GAASVPGAGPKPWQVPASASEVQIRTPRVNCPEKVIICLDLSEEMSVPKLESFNGSRTNALNVS
QKMVEMFVRTKHKIDKSHEFALVVVNDDSAWLSGLTSDPRELCSCLYDLETASCSTFKLQNHAF
NSPLQLASLPSSTSPLSPPRLSSLSPLPLPLSHVYECYICIYVPESSGPSIDGCEPSYGC

hide sequence

RefSeq Acc Id:	XP_017168436 ⟸ XM_017312947
- Peptide Label:	isoform X1
- UniProtKB:	Q3UI43 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MEVAEANSPTEEEEEEEEEGEETISEPRPHTRSNPEGAEDRALGAQASVGSRSEGEGEAATADG GAASVPGAGPKPWQVPASASEVQIRTPRVNCPEKVIICLDLSEEMSVPKLESFNGSRTNALNVS QKMVEMFVRTKHKIDKSHEFALVVVNDDSAWLSGLTSDPRELCSCLYDLETASCSTFNLEGLFS LIQQKTELPVTENVQTIPPPYVVRTILVYSRPPCQPQFSLTEPMKKMFQCPYFFFDIVYIHNGT EEKEEDMSWKDMFAFMGSLDTKGASYKYEVALAGPALELHNCMAKLLAHPLQRPCQTHASYSLL EEDEEAGEEEATV hide sequence

RefSeq Acc Id:	XP_017168437 ⟸ XM_017312948
- Peptide Label:	isoform X1
- UniProtKB:	Q3UI43 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MEVAEANSPTEEEEEEEEEGEETISEPRPHTRSNPEGAEDRALGAQASVGSRSEGEGEAATADG GAASVPGAGPKPWQVPASASEVQIRTPRVNCPEKVIICLDLSEEMSVPKLESFNGSRTNALNVS QKMVEMFVRTKHKIDKSHEFALVVVNDDSAWLSGLTSDPRELCSCLYDLETASCSTFNLEGLFS LIQQKTELPVTENVQTIPPPYVVRTILVYSRPPCQPQFSLTEPMKKMFQCPYFFFDIVYIHNGT EEKEEDMSWKDMFAFMGSLDTKGASYKYEVALAGPALELHNCMAKLLAHPLQRPCQTHASYSLL EEDEEAGEEEATV hide sequence

RefSeq Acc Id:

ENSMUSP00000002473 ⟸ ENSMUST00000002473

RefSeq Acc Id:

ENSMUSP00000148639 ⟸ ENSMUST00000212769

Promoters

RGD ID:

8667389

Promoter ID:

EPDNEW_M11726

Type:

multiple initiation site

Name:

Babam1_1

Description:

Mus musculus BRISC and BRCA1 A complex member 1 , mRNA.

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	8	71,396,877 - 71,396,937	EPDNEW

RGD ID:

6842547

Promoter ID:

MM_KWN:54779

Type:

CpG-Island

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

3T3L1_Day0, 3T3L1_Day1, 3T3L1_Day2, 3T3L1_Day3, BoneMarrow_0Hour, BoneMarrow_2Hour, BoneMarrow_4Hour, Brain, ES_Cell, Liver, MEF_B4, MEF_B6, Spleen

Transcripts:

NM_026636

Position:

Mouse Assembly	Chr	Position (strand)	Source
MGSCv36	8	73,919,786 - 73,920,872 (+)	MPROMDB

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	MGI:1915501	AgrOrtholog
Ensembl Genes	ENSMUSG00000031820	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein	ENSMUSP00000002473	ENTREZGENE, UniProtKB/Swiss-Prot
	ENSMUSP00000148639	UniProtKB/TrEMBL
Ensembl Transcript	ENSMUST00000002473	ENTREZGENE, UniProtKB/Swiss-Prot
	ENSMUST00000212769	UniProtKB/TrEMBL
InterPro	BABAM1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	vWFA_dom_sf	UniProtKB/Swiss-Prot
KEGG Report	mmu:68251	UniProtKB/Swiss-Prot
MGD	MGI:1915501	ENTREZGENE
NCBI Gene	68251	ENTREZGENE
PANTHER	PTHR15660	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Babam1	PhenoGen
Superfamily-SCOP	SSF53300	UniProtKB/Swiss-Prot
UniGene	Mm.21749	ENTREZGENE
UniProt	A0A1D5RM60_MOUSE	UniProtKB/TrEMBL
	BABA1_MOUSE	UniProtKB/Swiss-Prot, ENTREZGENE
UniProt Secondary	Q8C5Q8	UniProtKB/Swiss-Prot
	Q99JU2	UniProtKB/Swiss-Prot
	Q9CTJ4	UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2012-09-19	Babam1	BRISC and BRCA1 A complex member 1	5430437P03Rik	RIKEN cDNA 5430437P03 gene	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - CTD