2310022B05Rik (RIKEN cDNA 2310022B05 gene)

Gene: 2310022B05Rik (RIKEN cDNA 2310022B05 gene) Mus musculus

Analyze

Symbol:

2310022B05Rik

Name:

RIKEN cDNA 2310022B05 gene

RGD ID:

1619155

MGI Page

MGI

Description:

Predicted to be located in cytosol. Is expressed in nervous system and neural retina. Orthologous to human C1orf198 (chromosome 1 open reading frame 198).

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

hypothetical protein LOC69551; uncharacterized protein C1orf198 homolog

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

GRCm39 - Mouse Genome Assembly GRCm39

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	8	125,362,495 - 125,390,108 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	8	125,362,495 - 125,390,108 (-)	Ensembl		GRCm39 Ensembl
GRCm38	8	124,635,756 - 124,663,369 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	8	124,635,756 - 124,663,369 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	8	127,159,656 - 127,187,269 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	8	127,521,846 - 127,549,459 (-)	NCBI		MGSCv36	mm8
Celera	8	128,931,821 - 128,961,418 (-)	NCBI		Celera
Cytogenetic Map	8	E2	NCBI
cM Map	8	72.81	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Actin-Accumulation Myopathy (ISO)

congenital disorder of glycosylation type IIq (ISO)

gastrointestinal stromal tumor (ISO)

genetic disease (ISO)

parathyroid carcinoma (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

aflatoxin B1 (ISO)

antirheumatic drug (ISO)

arsane (ISO)

arsenic atom (ISO)

benzo[a]pyrene (ISO)

bisphenol A (ISO)

Brodifacoum (ISO)

cadmium atom (ISO)

cadmium dichloride (ISO)

cyclosporin A (ISO)

doxorubicin (ISO)

flutamide (ISO)

FR900359 (ISO)

fulvestrant (ISO)

mercury dichloride (ISO)

nickel sulfate (ISO)

oxaliplatin (ISO)

sulforaphane (ISO)

testosterone (ISO)

toluene (ISO)

topotecan (ISO)

troglitazone (EXP)

valproic acid (ISO)

vinclozolin (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

biological_process (ND)

Cellular Component

cytoplasm (IEA)

cytosol (ISO)

Molecular Function

molecular_function (ND)

Phenotype Annotations Click to see Annotation Detail View

Mammalian Phenotype

increased B cell number (IEA)

increased grip strength (IEA)

increased leukocyte cell number (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Mouse MP Annotation Import Pipeline	RGD automated import pipeline
2.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:8889548	PMID:10349636	PMID:11042159	PMID:11076861	PMID:11217851	PMID:12466851	PMID:12477932	PMID:15489334	PMID:15782199	PMID:16141072	PMID:16141073	PMID:17114649
PMID:21267068	PMID:29518331	PMID:36417873	PMID:38187761

Genomics

Comparative Map Data

2310022B05Rik
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	8	125,362,495 - 125,390,108 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	8	125,362,495 - 125,390,108 (-)	Ensembl		GRCm39 Ensembl
GRCm38	8	124,635,756 - 124,663,369 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	8	124,635,756 - 124,663,369 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	8	127,159,656 - 127,187,269 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	8	127,521,846 - 127,549,459 (-)	NCBI		MGSCv36	mm8
Celera	8	128,931,821 - 128,961,418 (-)	NCBI		Celera
Cytogenetic Map	8	E2	NCBI
cM Map	8	72.81	NCBI

C1orf198
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	230,837,119 - 230,869,591 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	230,837,119 - 230,869,589 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	1	230,972,865 - 231,005,337 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	229,039,489 - 229,070,900 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	1	204,238,818 - 204,271,280 (-)	NCBI		Celera
Cytogenetic Map	1	q42.2	NCBI
HuRef	1	201,457,528 - 201,489,961 (-)	NCBI		HuRef
CHM1_1	1	232,245,891 - 232,278,311 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	1	230,217,591 - 230,250,079 (-)	NCBI		T2T-CHM13v2.0

C19h1orf198
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	19	69,501,453 - 69,526,826 (-)	NCBI		GRCr8
mRatBN7.2	19	52,604,060 - 52,629,436 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	19	52,604,060 - 52,629,436 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	19	59,388,813 - 59,414,196 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	19	60,240,718 - 60,266,076 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	19	62,315,271 - 62,340,660 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	19	57,396,606 - 57,422,124 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	19	57,396,606 - 57,422,093 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	19	68,101,910 - 68,127,030 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	19	54,814,033 - 54,839,538 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	19	51,973,094 - 51,998,412 (-)	NCBI		Celera
Cytogenetic Map	19	q12	NCBI

CUNH1orf198
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955492	7,762,534 - 7,774,394 (+)	NCBI	ChiLan1.0	ChiLan1.0

C1H1orf198
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	18,338,313 - 18,369,450 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	18,530,872 - 18,561,972 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	206,386,486 - 206,417,583 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	211,413,850 - 211,445,020 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	211,413,850 - 211,445,020 (-)	Ensembl	panpan1.1		panPan2

C4H1orf198
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	4	8,531,219 - 8,564,929 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	4	8,531,001 - 8,564,910 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	4	8,522,968 - 8,556,697 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	4	8,555,998 - 8,589,669 (+)	NCBI		ROS_Cfam_1.0
UMICH_Zoey_3.1	4	8,560,088 - 8,593,700 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	4	8,682,190 - 8,715,818 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	4	8,912,263 - 8,945,915 (+)	NCBI		UU_Cfam_GSD_1.0

CUNH1orf198
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409344	43,466,304 - 43,492,162 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936484	19,631,524 - 19,657,560 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936484	19,631,530 - 19,657,388 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

C14H1orf198
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	14	59,515,877 - 59,552,288 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	14	59,516,754 - 59,553,705 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	14	64,181,727 - 64,217,120 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CUNH1orf198
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	25	68,108,942 - 68,137,870 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	25	68,106,262 - 68,137,838 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666055	70,014,494 - 70,045,647 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

CUNH1orf198
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624775	18,739,274 - 18,770,524 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624775	18,739,501 - 18,770,108 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in 2310022B05Rik
1118 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	951
Count of miRNA genes:	532
Interacting mature miRNAs:	633
Transcripts:	ENSMUST00000034464
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCm39)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
27095912	Pglq14_m	pelvic girdle length QTL 14, 16 week (mouse)					8	74126628	126826739	Mouse
27226796	Scvln16_m	sacral vertebrae length 2, 16 week (mouse)					8	89726628	130027694	Mouse
1357494	Obsty2_m	obesity 2 (mouse)			Not determined		8	96245241	129745061	Mouse
12880431	Fgf23lq2_m	FGF23 serum level QTL 2 (mouse)					8	97626632	130127694	Mouse
11252141	Fdr2_m	fat response to dietary restriction 2 (mouse)					8	98390634	130127694	Mouse
1301481	Lith11_m	lithogenic gene 11 (mouse)			Not determined		8	98563635	130127694	Mouse
1302105	Im1_m	Immunoregulatory 1 (mouse)			Not determined		8	99828531	130127694	Mouse
1301080	Sluc9_m	susceptibility to lung cancer 9 (mouse)			Not determined		8	99828531	130127694	Mouse
4141435	Fbtq3_m	femoral bone trait QTL 3 (mouse)			Not determined		8	100965309	130127694	Mouse
1301316	Dntcs1_m	dental caries susceptibility 1 (mouse)			Not determined		8	103443553	127781786	Mouse
11532691	Sluc38_m	susceptibility to lung cancer 38 (mouse)					8	105033977	130127694	Mouse
11532692	Sluc38a_m	susceptibility to lung cancer 38a (mouse)					8	105033977	130127694	Mouse
14746994	Manh65_m	mandible shape 65 (mouse)					8	106489629	130127694	Mouse
10412273	Fcd1_m	functional capillary density 1 (mouse)			Not determined		8	110415083	130127694	Mouse
10412274	Leci1_m	leukocyte endothelial cell interactions 1 (mouse)			Not determined		8	110415083	130127694	Mouse
12904938	Edlmmq7_m	extensor digitorum longus muscle mass QTL 7 (mouse)					8	111481497	130127694	Mouse
12904960	Gmmq6_m	gastrocnemius muscle mass QTL 6 (mouse)					8	111481497	130127694	Mouse
4141546	Mrdq3_m	modifier of retinal degeneration QTL 3 (mouse)			Not determined			114439420	126055880	Mouse
26884375	Skwq2_m	skull length QTL 2, 5 week (mouse)					8	120726739	130027694	Mouse
1357841	Phdlc2_m	plasma HDL cholesterol 2 (mouse)			Not determined		8	125191161	129745061	Mouse

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_175149	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC135015	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK009458	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK084773	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK154813	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK155222	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK170562	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK177269	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK182676	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK184261	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK186183	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK187682	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK191973	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK192621	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK193411	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK193701	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK193741	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK195384	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK196551	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK197120	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK200652	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK201476	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK202121	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK202477	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK202711	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK203865	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK203904	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK203974	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK205136	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK210347	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK215474	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK215847	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK217083	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK217497	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC058626	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH466525	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSMUST00000034464 ⟹ ENSMUSP00000034464

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	8	125,362,495 - 125,390,108 (-)	Ensembl
GRCm38.p6 Ensembl	8	124,635,756 - 124,663,369 (-)	Ensembl

RefSeq Acc Id:

NM_175149 ⟹ NP_780358

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	8	125,362,495 - 125,390,108 (-)	NCBI
GRCm38	8	124,635,756 - 124,663,369 (-)	ENTREZGENE
MGSCv37	8	127,159,656 - 127,187,269 (-)	RGD
Celera	8	128,931,821 - 128,961,418 (-)	RGD
cM Map	8		ENTREZGENE

Sequence:

show sequence

GGCGTAGGCGGCCCGTACGAAGGGTGTCCCGGGAAGGTCTGGGGGCGGTGCTCAGCCAGGGGCG
GAGGAGGAGGGCTCAGCGGGTGGGGTAGGGACGGCGCTCCGGGAGGAGACGGAGGCGGAGCCCC
GGGGCGGGGCGCGGGCGGACCGGGAGGCGGCGCTCCGACCGGGACGCGCGGGCCGGGTATGGCG
TCGATGGCGGCGGCGATCGCGGCCTCGCGTTCGGCCGTCATGAGCGGGAACCGGCCGCTGGACG
ACCGGGAGCGGAAGCGCTTCACCTACTTCTCATCGCTGAGCCCCATGGCCAGGAAGATCATGCA
GGACAAGGAGAAGATCCGGGAGAAGTACGGGCCCGAGTGGGCGCGGCTGCCGCCCGCGCAGCAG
GACGAAATCATCGACCGCTGCCTGGTGGGGCCTCGCGCCCCGGCGGCCGCCGCCGATGCGGGGG
ACGTGCGGGACCCGGCGCGCTTCCCTGGCCTGCGCGGGCCCACGGGCCAGAAGCTGGTGCGCTT
CGGCGACGAGGACATAACTTGGCAAGATGAACACTCGGCCCCATTCTCCTGGGAGACGAGGAGT
CAGATGGAATTCAGCATCTCCTCCTTATCCATCCAGGAGCCCAGCGCTGCCACTGTGACCAGTG
ATGCCAGGTCCCTGGCCAAGGCTCCTCAGGGCACACAGGGTTCCAAACCTGCCCAGAGCAGCAG
ATCCTCTAGCCTGGATGCCCTGGGACCGGCTCGGAAAGAGGAAGAAGCACCCTTCTGGAAGATC
AATGCCGAGCGCTCTCGGGAGGGGCCTGAGGCTGAGTTCCAGTCCCTGACACCCAGCCAGATCA
AGTCCATGGAGAAGGGGGAAAAGGTTCTGCCAGCTTGCTACCGCCAAGAGCCCACCACGAAAGA
CAGGGAGGCCAAACCTGTGCCACAGGAACAGCAGACCCTCCCCAGTGTGAGCGCAGAGCAAGAG
GTGCCCCAGCCGGTGCAAGCCCCTGCCAGCTTGCTGCCCAAGGCTACCCCCACGGAGTCCCCAG
AGAAGCCACCGCCTCCTGCCGTCCAGCGGGACGAAGATGATGATGCTCTGTTCTCAGAGCCTGC
ACTTGCGCAGATCAGCTCCAGTAATGTGCTCTTGAAGACAGGCTTTGATTTTCTGGACAACTGG
TAAATGGTGCTACCCAGAAACACAGCCAGGAGCCCCGCGTGGCCCACCGTGGTGTTCAGAGGAG
AAGGCAGCACTGCCTGCGTCTTTTCCTGTTTTCTCTACTCCTTTCTTAGTCTTTTTGGAAACTA
GGAAATGTTGCCAGGTTTTCCCCGTTTTTGGTAAAACCAAATAGATAAATATGCTATTTTCAAT
GATTTGATAACAAGTTTTACACTTGGGATTTTTAAACACTAGGTACCCAGTAAGCCTTGTAAAT
AAAACTTCTGTTCCCAGCTCCATCCCACCTTCCCTCCAATGAGGTTCCCTGACCAAGTCACAAA
AGGTCGCAAAAGTGACTCTTTCTTGTCACTTCCTGTTGAGGGCTCCCTGGGTAGATATGAGCTG
TTGGCTGTCACTGTGGAAGACTCATCCTTAAAAAGTGTGCTCACCTGGTACCCTTTCTTCATAG
AAGCCAGGTTAAGCACTACGTATCCTTCCCCTCCCAATGCATAGGAAGCAGACTGCGGGCGGTG
GCAGGCAGGTGCCCTCTGAGCTGGCCTGGTGACTTACTCAGAGCTCTGGTCGCCCTTCAAAAGC
AGCTGCCTGTTGTATCCAGTTCCTGTTGTTGTATATAGAGCTGCATCGCGTTCCTTGGCTCTGT
AGGAGATTCCTTTGGGAAGTTATTAAGACCGTCCCGCTAGCGTCCCAGTCCTGACCGCTGTAGG
AGTCAGGGTGGTGACAGCTGTGCTAGACATCAGGGCTCTTCTGATTCACTGAGGTAGAACCCCA
GGCTTAAGCGTCATTCATCCCAGTCTGGTCTGGCTGCATCGTGCAGGACACGCCCCCAGACCTG
ACCGCATTCCTGGTGGTTCCGGAAGCTTCCCCTTGCAGCCCCAAGAGCTCACAGCAACAAGGCT
GGGCGAGGAGTGTGTGCCTCACCCGGAGTTTGATGCCCTCTGTCCTCACTGCCCTGACATGGCC
TCTGGACCCTCCATGCACCTACAGGATGCTAAGCAAATCTGTGAGCTCGGGGTGGTGTGGTCTA
CCCTTTGCTATCACTCCGTTCTCCTCACCCGAAGCCTTAATCTCCACGAGCACTCCTCCGAGAG
CCTGGTTTCAGTACTGCAAGCTGTAGCCTCCTTAATGTCTGAAGTAGCTTCTGGAATATTCTAT
GTAGCTCCAAGGTAAAGCACGTGGCAACCCCACCCTCACCCCCCCCCCCCGGCCACTCTCCCCT
CCTCTAGGAAGACATGCCAAAGCTGTATACTTAGCCAATATCGATGTGATACCTGCCAATTAGC
TTGTGTCCCGAACCTCCCTCGGTCCCAGTCCCTGGTGGTGCTGGGGTTTGCCTTCCTCTAGCAA
CTTTTGATGGAGTCATCTTTCCGCACTGTTTGTAGGGGAGTTGATACAGAGGAAGAGTTGAAAC
CTGTGCAACAATGTTTTTCCTCCCCATGGGTCTACGCTCCATAACATTGGTGTAGCAGGAGGAG
ACTCTGACCTGAGTGTAGGCAGCCTCTGTGACTGGTCCCATGGGTGACTCTCGCAGTGGTGTGT
CTCAAGGAGTCCTCTGAAGAGCAGGTGGGAAGTCGAAGATGGGGAGTCTAAGAGGGATCCTATA
GGACCCGCCTGACCTGGGAATTGTCCTTGTGCCTGGGTGGAGTCCATACCACGCTGGCTTCTTG
GTCTCCCCCCAGGGAACATGTGTCAGTGACCAGGAAATCAGAACTGTATCTATCATTTTCCCTT
CCTCCATACATCATGATGAAGTATGTTCATTATTCTTCTCTGAAGCACATTCTTTGGCTGAAGC
CGCTGTATGATGCTGGGTTCCGCCACATGCCCAGGCTCAGCACCTCTGGGAGGCAGCTCCAGGG
CTCTGTGTCCTGCTCTTGGTGGCTGTGTCCAACAGAAGCTCTCAGGAACCCAGGCTCTGCGTGT
CTGGTTTGTCCCTGAATCCCAGCCCTCCGGGTTGGATCCGATCCTGTCAGGAGCAGTGGAGTCT
GCCTCCTGGCCAGGTGCCCTCCTCCTTGGGCCAGTGTGGGAGTGGCCTTCCATTCTTCACTCCG
CCCTCTCCTTTGATACATACTTTCGAAATGGTAAATTCTTACTGAGAGCTTGTAATTTGGTCCT
ATTTTATACTCTAGCCTTTAATAAAGCCATTTTAAAAATGAGAAAAAAAAAAA

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Protein Sequences


Protein RefSeqs	NP_780358	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH58626	(Get FASTA)	NCBI Sequence Viewer
	BAC39275	(Get FASTA)	NCBI Sequence Viewer
	BAE32847	(Get FASTA)	NCBI Sequence Viewer
	BAE33133	(Get FASTA)	NCBI Sequence Viewer
	BAE41883	(Get FASTA)	NCBI Sequence Viewer
	EDL11773	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSMUSP00000034464
	ENSMUSP00000034464.7
GenBank Protein	Q8C3W1	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_780358 ⟸ NM_175149

- UniProtKB:

Q3U3E1 (UniProtKB/Swiss-Prot), Q3U2K7 (UniProtKB/Swiss-Prot), Q3TCS2 (UniProtKB/Swiss-Prot), Q6PDM3 (UniProtKB/Swiss-Prot), Q8C3W1 (UniProtKB/Swiss-Prot)

- Sequence:

show sequence

MASMAAAIAASRSAVMSGNRPLDDRERKRFTYFSSLSPMARKIMQDKEKIREKYGPEWARLPPA
QQDEIIDRCLVGPRAPAAAADAGDVRDPARFPGLRGPTGQKLVRFGDEDITWQDEHSAPFSWET
RSQMEFSISSLSIQEPSAATVTSDARSLAKAPQGTQGSKPAQSSRSSSLDALGPARKEEEAPFW
KINAERSREGPEAEFQSLTPSQIKSMEKGEKVLPACYRQEPTTKDREAKPVPQEQQTLPSVSAE
QEVPQPVQAPASLLPKATPTESPEKPPPPAVQRDEDDDALFSEPALAQISSSNVLLKTGFDFLD
NW

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RefSeq Acc Id:

ENSMUSP00000034464 ⟸ ENSMUST00000034464

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q8C3W1-F1-model_v2	AlphaFold	Q8C3W1	1-322	view protein structure

Promoters

RGD ID:

8668631

Promoter ID:

EPDNEW_M12347

Type:

initiation region

Name:

2310022B05Rik_1

Description:

Mus musculus RIKEN cDNA 2310022B05 gene , mRNA.

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

null; see alsoEPDNEW_M12348

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	8	124,663,194 - 124,663,254	EPDNEW

RGD ID:

8668633

Promoter ID:

EPDNEW_M12348

Type:

initiation region

Name:

2310022B05Rik_2

Description:

Mus musculus RIKEN cDNA 2310022B05 gene , mRNA.

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

null; see alsoEPDNEW_M12347

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	8	124,663,421 - 124,663,481	EPDNEW

RGD ID:

6842493

Promoter ID:

MM_KWN:56173

Type:

CpG-Island

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

3T3L1_Day0, 3T3L1_Day1, 3T3L1_Day2, 3T3L1_Day3, BoneMarrow_0Hour, BoneMarrow_2Hour, BoneMarrow_4Hour, Brain, Kidney, Liver, Lung, MEF_B4, MEF_B6

Transcripts:

UC009NXG.1

Position:

Mouse Assembly	Chr	Position (strand)	Source
MGSCv36	8	127,186,941 - 127,187,542 (-)	MPROMDB

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	MGI:1916801	AgrOrtholog
Ensembl Genes	ENSMUSG00000031983	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSMUST00000034464	ENTREZGENE
	ENSMUST00000034464.8	UniProtKB/Swiss-Prot
InterPro	DUF4706	UniProtKB/Swiss-Prot
KEGG Report	mmu:69551	UniProtKB/Swiss-Prot
MGD	MGI:1916801	ENTREZGENE
NCBI Gene	69551	ENTREZGENE
PANTHER	SIMILAR TO RIKEN CDNA 2310022B05	UniProtKB/Swiss-Prot
	SIMILAR TO RIKEN CDNA 2310022B05	UniProtKB/Swiss-Prot
Pfam	DUF4706	UniProtKB/Swiss-Prot
PhenoGen	2310022B05Rik	PhenoGen
UniProt	CA198_MOUSE	UniProtKB/Swiss-Prot
	Q3TCS2	ENTREZGENE
	Q3U2K7	ENTREZGENE
	Q3U3E1	ENTREZGENE
	Q6PDM3	ENTREZGENE
	Q8C3W1	ENTREZGENE
UniProt Secondary	Q3TCS2	UniProtKB/Swiss-Prot
	Q3U2K7	UniProtKB/Swiss-Prot
	Q3U3E1	UniProtKB/Swiss-Prot
	Q6PDM3	UniProtKB/Swiss-Prot

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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