1700065D16Rik (RIKEN cDNA 1700065D16 gene) - Rat Genome Database
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Gene: 1700065D16Rik (RIKEN cDNA 1700065D16 gene) Mus musculus
Analyze
Symbol: 1700065D16Rik
Name: RIKEN cDNA 1700065D16 gene
RGD ID: 1619114
MGI Page MGI
Description:
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: hypothetical protein LOC73410; uncharacterized protein LOC73410
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39995,737,471 - 95,739,935 (-)NCBIGRCm39mm39
GRCm38995,855,418 - 95,857,882 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl995,855,418 - 95,858,322 (-)EnsemblGRCm38mm10GRCm38
MGSCv37995,755,969 - 95,758,739 (-)NCBIGRCm37mm9NCBIm37
MGSCv36995,664,902 - 95,667,672 (-)NCBImm8
Celera995,421,971 - 95,424,741 (-)NCBICelera
Cytogenetic Map9E3.3NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:16141072   PMID:16141073   PMID:24316575  


Genomics

Position Markers
PMC316378P1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38995,857,604 - 95,857,819UniSTSGRCm38
MGSCv37995,758,023 - 95,758,238UniSTSGRCm37
Celera995,424,025 - 95,424,240UniSTS
Cytogenetic Map9E4UniSTS
Cytogenetic Map9E3.3UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
12904947Tammq7_mtibialis anterior muscle mass QTL 7 (mouse)991683173124595110Mouse
13463474Hbbcq5_mhemoglobin concentration QTL 5 (mouse)991641084124595110Mouse
10054068El8_mepilepsy 8 (mouse)Not determined972977005106977152Mouse
1357461Idd2_minsulin dependent diabetes susceptibility 2 (mouse)Not determined982910333116910428Mouse
11081166Psl5_mpromotion susceptibility QTL 5 (mouse)994981301112872929Mouse
1301192Skts6_mskin tumor susceptibility 6 (mouse)Not determined978640645112640755Mouse
13463477Rbc9_mred blood cell count 9 (mouse)991641084124595110Mouse
1357635Splq4_mspleen weight QTL 4 (mouse)Not determined963332429120362868Mouse
1301241Renf1_mrenal failure 1 (mouse)Not determined95212317899910428Mouse
4142042Alpq3_malcohol preference QTL 3 (mouse)Not determined93739490198819654Mouse
1300549Bbaa17_mB. burgdorferi-associated arthritis 17 (mouse)Not determined986230401120230530Mouse
1558767Skmw11_mskeletal muscle weight 11 (mouse)Not determined991641084124595110Mouse
10045638Heal29_mwound healing/regeneration 29 (mouse)Not determined967124167101124167Mouse
12910773Splic3_mspleen iron content 3 (mouse)991413879124595110Mouse
14746992Manh67_mmandible shape 67 (mouse)994036768124595110Mouse
4141545Tailaq2_mtail length adjusted QTL 2 (mouse)Not determined63332429120362868Mouse
1357610Vtbt8_mvertebral trabecular bone trait 8 (mouse)Not determined968897510102897652Mouse
1301732Char1_mP. chabaudi malaria resistance QTL 1 (mouse)Not determined981798268115798392Mouse
1301611Lrnx3_mlearning contextual 3 (mouse)Not determined96224248596242599Mouse
1301407Rapop2_mradiation-induced apoptosis 2 (mouse)Not determined976535936110536130Mouse
1301725Lifespan1_mlife span 1 (mouse)Not determined974368177108368325Mouse
12910770Splic1_mspleen iron content 1 (mouse)991413879124595110Mouse
1301573Etohcta8_methanol conditioned taste aversion 8 (mouse)Not determined972977005106977152Mouse
12904937Edlmmq9_mextensor digitorum longus muscle mass QTL 9 (mouse)991683173124595110Mouse
4141833W10q13_mweight 10 weeks QTL 13 (mouse)Not determined63332429120362868Mouse
13463478Mchq18_mmean corpuscular hemoglobin QTL 18 (mouse)991641084124595110Mouse
13207569Tcq13_mtotal cholesterol QTL 13 (mouse)959990000109260000Mouse
1301636Lith5_mlithogenic gene 5 (mouse)Not determined966207024100207122Mouse
1302001Bdln5_mbody length 5 (mouse)Not determined993762590124595110Mouse
10054492El7_mepilepsy 7 (mouse)Not determined975775364114474379Mouse
12910772Lvic6_mliver iron content 6 (mouse)991413879124595110Mouse
1302103Dob2_mdietary obesity 2 (mouse)Not determined986239845120289624Mouse
10766454Char10_mP. chabaudi malaria resistance QTL 10 (mouse)982910333116910428Mouse
1357657Pymr_mPlasmodium yoelli malaria resistance (mouse)Not determined989977005118938021Mouse
10412242Alpq8_malcohol preference QTL 8 (mouse)Not determined989284925123284925Mouse
1301302Pas4_mpulmonary adenoma susceptibility 4 (mouse)Not determined969239845103239920Mouse
12904961Gmmq7_mgastrocnemius muscle mass QTL 7 (mouse)991683173124595110Mouse
13463480Mchcq2_mmean corpuscular hemoglobin concentration QTL 2 (mouse)991641084124595110Mouse
10412174Habiir4_mhyperoxic acute lung injury imprinted region 4 (mouse)Not determined96936046598819654Mouse
10401247Bglu14_mblood glucose level 14 (mouse)Not determined979397810113397888Mouse
1301621Hpic1_mhaloperidol-induced catalepsy 1 (mouse)Not determined969546513103546645Mouse
1300884Sluc11_msusceptibility to lung cancer 11 (mouse)Not determined982910333116910428Mouse
1302065El1_mepilepsy 1 (mouse)Not determined975775364114474379Mouse
18182932Metl3_mmetabolite locus 3, N-acetylglutamate (mouse)989563342123563342Mouse
1301869Tbbmd4_mtotal body bone mineral density 4 (mouse)Not determined976117105101528921Mouse
11251716Siim2_mstress induced immobility 2 (mouse)986748483120748483Mouse
12880422V25Dq6_mvitamin D inactive form serum level QTL 6 (mouse)987800000121800000Mouse
1301487Nociq1_mnociceptive sensitivity inflammatory QTL 1 (mouse)Not determined984528818118528921Mouse
1301924Bmd10_mbone mineral density 10 (mouse)Not determined968897510102897652Mouse
10412180Msam3_mmuscle, skeletal, activity measure 3 (mouse)Not determined985897510108641186Mouse
1301649Psl1_mpromotion susceptibility QTL 1 (mouse)Not determined989412277123412396Mouse
1301484Bwq6_mbody weight (mouse)Not determined993762590124595110Mouse
13463475Hctq7_mhematocrit QTL 7 (mouse)991641084124595110Mouse
4141224Dxmod_mdoxorubicin nephropathy modifier (mouse)Not determined49541121101528921Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:661
Count of miRNA genes:419
Interacting mature miRNAs:475
Transcripts:ENSMUST00000178038
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000178038
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl995,855,552 - 95,858,320 (-)Ensembl
RefSeq Acc Id: ENSMUST00000188975
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl995,855,420 - 95,857,871 (-)Ensembl
RefSeq Acc Id: ENSMUST00000189279
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl995,855,418 - 95,857,517 (-)Ensembl
RefSeq Acc Id: ENSMUST00000189348
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl995,855,421 - 95,857,871 (-)Ensembl
RefSeq Acc Id: ENSMUST00000190890
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl995,855,420 - 95,858,322 (-)Ensembl
RefSeq Acc Id: NM_001271569   ⟹   NP_001258498
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39995,737,471 - 95,739,935 (-)NCBI
GRCm38995,855,418 - 95,857,882 (-)NCBI
Celera995,421,839 - 95,424,303 (-)NCBI
Sequence:
RefSeq Acc Id: NR_073361
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39995,737,471 - 95,739,570 (-)NCBI
GRCm38995,855,418 - 95,857,517 (-)NCBI
Celera995,421,839 - 95,424,303 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001258498 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH53441 (Get FASTA)   NCBI Sequence Viewer  
  BAB24779 (Get FASTA)   NCBI Sequence Viewer  
  BAC32294 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_001258498   ⟸   NM_001271569
- UniProtKB: Q8BR99 (UniProtKB/TrEMBL)
- Sequence:

Promoters
RGD ID:6844035
Promoter ID:MM_KWN:58404
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day6,   Kidney,   MEF_B6,   Spleen
Transcripts:ENSMUST00000062914,   NM_028533,   UC009RBL.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36995,757,659 - 95,758,159 (-)MPROMDB
RGD ID:8670474
Promoter ID:EPDNEW_M13268
Type:multiple initiation site
Name:1700065D16Rik_1
Description:Mus musculus RIKEN cDNA 1700065D16 gene , transcript variant1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M13270  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38995,857,565 - 95,857,625EPDNEW
RGD ID:15093643
Promoter ID:EPDNEWNC_M1556
Type:single initiation site
Name:1700065D16Rik_1
Description:RIKEN cDNA 1700065D16 gene [Source:MGISymbol;Acc:MGI:1920660]
SO ACC ID:SO:0000170
Source:EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38995,857,565 - 95,857,625EPDNEWNC
RGD ID:8670478
Promoter ID:EPDNEW_M13270
Type:multiple initiation site
Name:1700065D16Rik_2
Description:Mus musculus RIKEN cDNA 1700065D16 gene , transcript variant1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M13268  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38995,857,871 - 95,857,931EPDNEW
RGD ID:15093648
Promoter ID:EPDNEWNC_M1557
Type:multiple initiation site
Name:1700065D16Rik_2
Description:RIKEN cDNA 1700065D16 gene [Source:MGISymbol;Acc:MGI:1920660]
SO ACC ID:SO:0000170
Source:EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38995,857,871 - 95,857,931EPDNEWNC

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000096655 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000188975 ENTREZGENE
  ENSMUST00000189279 ENTREZGENE
KEGG Report mmu:73410 UniProtKB/TrEMBL
MGD MGI:1920660 ENTREZGENE
NCBI Gene 73410 ENTREZGENE
PhenoGen 1700065D16Rik PhenoGen
UniGene Mm.443314 ENTREZGENE
  Mm.491830 ENTREZGENE
UniProt Q7TSG0_MOUSE UniProtKB/TrEMBL
  Q8BR99 ENTREZGENE, UniProtKB/TrEMBL
  Q8CDG0_MOUSE UniProtKB/TrEMBL
  Q9CVR3_MOUSE UniProtKB/TrEMBL