Smim33 (small integral membrane protein 33) - Rat Genome Database

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Gene: Smim33 (small integral membrane protein 33) Mus musculus
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Symbol: Smim33
Name: small integral membrane protein 33
RGD ID: 1619107
MGI Page MGI
Description: Predicted to be located in membrane. Orthologous to human SMIM33 (small integral membrane protein 33).
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: 1700066B19Rik; hypothetical protein LOC73449; uncharacterized protein LOC73449
RGD Orthologs
Human
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391835,859,895 - 35,863,922 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1835,836,278 - 35,863,922 (+)EnsemblGRCm39 Ensembl
GRCm381835,726,842 - 35,730,869 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1835,703,225 - 35,730,869 (+)EnsemblGRCm38mm10GRCm38
MGSCv371835,886,643 - 35,890,523 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361835,852,963 - 35,856,843 (+)NCBIMGSCv36mm8
Celera1836,183,063 - 36,186,948 (+)NCBICelera
Cytogenetic Map18B2NCBI
cM Map1819.22NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
bisphenol A  (EXP)
ozone  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:14610273   PMID:16141072   PMID:16141073   PMID:21267068   PMID:21677750  


Genomics

Comparative Map Data
Smim33
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391835,859,895 - 35,863,922 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1835,836,278 - 35,863,922 (+)EnsemblGRCm39 Ensembl
GRCm381835,726,842 - 35,730,869 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1835,703,225 - 35,730,869 (+)EnsemblGRCm38mm10GRCm38
MGSCv371835,886,643 - 35,890,523 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361835,852,963 - 35,856,843 (+)NCBIMGSCv36mm8
Celera1836,183,063 - 36,186,948 (+)NCBICelera
Cytogenetic Map18B2NCBI
cM Map1819.22NCBI
SMIM33
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385139,471,004 - 139,473,700 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5139,471,004 - 139,473,700 (+)EnsemblGRCh38hg38GRCh38
GRCh375138,850,589 - 138,853,285 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map5q31.2NCBI
T2T-CHM13v2.05139,996,065 - 139,998,761 (+)NCBIT2T-CHM13v2.0
Smim33
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81827,599,018 - 27,602,174 (+)NCBIGRCr8
mRatBN7.21827,325,302 - 27,327,193 (+)NCBImRatBN7.2mRatBN7.2
Cytogenetic Map18p11NCBI
SMIM33
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24134,736,163 - 134,741,411 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15132,875,712 - 132,879,231 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05134,840,756 - 134,843,851 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1 Ensembl5140,962,999 - 140,964,796 (+)Ensemblpanpan1.1panPan2
SMIM33
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha231,863,626 - 31,883,132 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0235,215,441 - 35,234,973 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl235,232,456 - 35,234,689 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1232,267,922 - 32,287,418 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0233,134,224 - 33,153,726 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0233,886,041 - 33,905,619 (+)NCBIUU_Cfam_GSD_1.0
Smim33
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213153,057,566 - 153,060,397 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365318,551,318 - 8,553,319 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
LOC110259781
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl2141,353,928 - 141,355,996 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.12141,353,851 - 141,356,585 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
SMIM33
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Vero_WHO_p1.0NW_02366603435,736,767 - 35,738,539 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0

Variants

.
Variants in Smim33
89 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1060
Count of miRNA genes:566
Interacting mature miRNAs:697
Transcripts:ENSMUST00000097617, ENSMUST00000143778
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
27226723Tibw9_mtibia width 9, proximal, 16 week (mouse)18320000060933072Mouse
1558849W3q15_mweight 3 weeks QTL 15 (mouse)Not determined18504111961272643Mouse
1558873Hrtfm7_mheart failure modifier 7 (mouse)Not determined18808696442087106Mouse
13504732Cath6_mcarotid atherosclerosis 6 (mouse)181363712647637126Mouse
1357603Mom3_mmodifier of Min 3 (mouse)Not determined181403002367098962Mouse
1300994Pvcan3_mprotection against vaginal candidiasis 3 (mouse)Not determined181619964050199776Mouse
1301307Phospq1_mphospholipid QTL 1 (mouse)Not determined181813970452139859Mouse
1300638Im7_mimmunoregulatory 7 (mouse)Not determined181901887453018992Mouse
1558743Kcal1_mkilocalorie 1 (mouse)Not determined181901887453018992Mouse
11532709Sluc41_msusceptibility to lung cancer 41 (mouse)182095369457590708Mouse
13463476Hctq8_mhematocrit QTL 8 (mouse)182121758055217727Mouse
1301950Otx2m1_morthodenticle homolog 2 (Drosophila) modifier 1 (mouse)Not determined182156868236187740Mouse
1300877Adip8_madiposity 8 (mouse)Not determined182261991456620127Mouse
11532710Sluc41a_msusceptibility to lung cancer 41a (mouse)182261991456620127Mouse
11532715Sluc41b_msusceptibility to lung cancer 41b (mouse)182261991456620127Mouse
11532716Sluc41c_msusceptibility to lung cancer 41c (mouse)182261991456620127Mouse
1301570Sluc14_msusceptibility to lung cancer 14 (mouse)Not determined182261991456620127Mouse
4142031Moen1_mmodifier of engrailed QTL 1 (mouse)Not determined182411556058115730Mouse
25823173Hrsq12_mhost response to SARS QTL 12, hemorrhage (mouse)182489588178339555Mouse
12904950Smmq3_msoleus muscle mass QTL 3 (mouse)182605687560056875Mouse
25823167Hrsq5_mhost response to SARS QTL 5, D3% weight (mouse)182724111558827077Mouse
25823171Hrsq10_mhost response to SARS QTL 10, D4% weight (mouse)182724111558827077Mouse
25823174Hrsq11_mhost response to SARS QTL 11, log titer (mouse)182724111558827077Mouse
1301400Lmr13_mleishmaniasis resistance 13 (mouse)Not determined182810938062109518Mouse
4141857Mhysq5_mmale hybrid sterility QTL 5 (mouse)Not determined2813060462130739Mouse
1302163Bmd16_mbone mineral density 16 (mouse)Not determined182966791463668060Mouse
12880412V125Dq12_mvitamin D active form serum level QTL 12 (mouse)183023306764233067Mouse
1300685Scc5_mcolon tumor susceptibility 5 (mouse)Not determined183198848065988629Mouse
1357690Vtbt19_mvertebral trabecular bone trait 19 (mouse)Not determined183309104367091221Mouse
1301771Pcyts6_mplasmacytoma susceptibility 6 (mouse)Not determined183565863269658851Mouse


Expression


Sequence


RefSeq Acc Id: ENSMUST00000097617   ⟹   ENSMUSP00000095222
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1835,860,042 - 35,863,922 (+)Ensembl
GRCm38.p6 Ensembl1835,726,989 - 35,730,869 (+)Ensembl
RefSeq Acc Id: ENSMUST00000143778
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1835,836,278 - 35,862,823 (+)Ensembl
GRCm38.p6 Ensembl1835,703,225 - 35,729,770 (+)Ensembl
RefSeq Acc Id: NM_001033168   ⟹   NP_001028340
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391835,860,042 - 35,863,922 (+)NCBI
GRCm381835,726,989 - 35,730,869 (+)NCBI
MGSCv371835,886,643 - 35,890,523 (+)RGD
Celera1836,183,063 - 36,186,948 (+)RGD
cM Map18 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006526290   ⟹   XP_006526353
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391835,859,895 - 35,863,913 (+)NCBI
GRCm381835,726,842 - 35,730,860 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001028340 (Get FASTA)   NCBI Sequence Viewer  
  XP_006526353 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein BAE36837 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000095222
  ENSMUSP00000095222.3
GenBank Protein Q3TS39 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_001028340   ⟸   NM_001033168
- UniProtKB: Q3TS39 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006526353   ⟸   XM_006526290
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: ENSMUSP00000095222   ⟸   ENSMUST00000097617

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q3TS39-F1-model_v2 AlphaFold Q3TS39 1-127 view protein structure

Promoters
RGD ID:13677436
Promoter ID:EPDNEW_M22867
Type:initiation region
Name:1700066B19Rik_1
Description:Mus musculus RIKEN cDNA 1700066B19 gene , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381835,726,987 - 35,727,047EPDNEW
RGD ID:6828951
Promoter ID:MM_KWN:24939
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Lung
Transcripts:NM_001033168
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361835,886,251 - 35,886,751 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1920699 AgrOrtholog
Ensembl Genes ENSMUSG00000073598 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000097617 ENTREZGENE
  ENSMUST00000097617.3 UniProtKB/Swiss-Prot
InterPro SMIM33 UniProtKB/Swiss-Prot
KEGG Report mmu:73449 UniProtKB/Swiss-Prot
MGD MGI:1920699 ENTREZGENE
NCBI Gene 73449 ENTREZGENE
PANTHER PTHR37873 UniProtKB/Swiss-Prot
  SMALL INTEGRAL MEMBRANE PROTEIN 33 UniProtKB/Swiss-Prot
PhenoGen Smim33 PhenoGen
UniProt Q3TS39 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-06 Smim33  small integral membrane protein 33  1700066B19Rik  RIKEN cDNA 1700066B19 gene  Symbol and/or name updated 27372883 PROVISIONAL