Pcgf5 (polycomb group ring finger 5) - Rat Genome Database

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Gene: Pcgf5 (polycomb group ring finger 5) Mus musculus
Analyze
Symbol: Pcgf5
Name: polycomb group ring finger 5
RGD ID: 1619085
MGI Page MGI
Description: Enables histone H2AK119 ubiquitin ligase activity. Involved in random inactivation of X chromosome. Part of PcG protein complex. Colocalizes with X chromosome. Is expressed in bladder; central nervous system; embryo; heart; and ureter. Orthologous to human PCGF5 (polycomb group ring finger 5).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 0610009F02Rik; 1110054A01Rik; 5830406C17Rik; 5830443C21Rik; 9530023M17Rik; AI324127; polycomb group RING finger protein 5; RING finger protein 159
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391936,325,729 - 36,438,370 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1936,325,709 - 36,438,370 (+)EnsemblGRCm39 Ensembl
GRCm381936,348,329 - 36,460,970 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1936,348,309 - 36,460,970 (+)EnsemblGRCm38mm10GRCm38
MGSCv371936,453,557 - 36,530,694 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361936,444,211 - 36,521,348 (+)NCBIMGSCv36mm8
Celera1937,153,842 - 37,230,831 (+)NCBICelera
Cytogenetic Map19C2NCBI
cM Map1931.59NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View
COVID-19  (ISO)

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
centrosome  (IEA,ISO)
Golgi apparatus  (IEA,ISO)
nucleoplasm  (IEA,ISO)
nucleus  (ISO)
PcG protein complex  (IDA,ISO,ISS)
PRC1 complex  (IBA)
X chromosome  (IDA)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. PRC1 complex diversity: where is it taking us? Gil J and O'Loghlen A, Trends Cell Biol. 2014 Jul 22. pii: S0962-8924(14)00102-0. doi: 10.1016/j.tcb.2014.06.005.
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
4. Occupying chromatin: Polycomb mechanisms for getting to genomic targets, stopping transcriptional traffic, and staying put. Simon JA and Kingston RE, Mol Cell. 2013 Mar 7;49(5):808-24. doi: 10.1016/j.molcel.2013.02.013.
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:14610273   PMID:15618518   PMID:16141072   PMID:16141073   PMID:16778019   PMID:17296600  
PMID:17462595   PMID:18287559   PMID:18425126   PMID:21267068   PMID:21873635   PMID:22325351   PMID:24457600   PMID:25053427   PMID:27136092   PMID:28049731   PMID:28596365   PMID:29054931  
PMID:29220657   PMID:29727681   PMID:29765032   PMID:30190278   PMID:31029541   PMID:32130724   PMID:34637754   PMID:37158107   PMID:37196079  


Genomics

Comparative Map Data
Pcgf5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391936,325,729 - 36,438,370 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1936,325,709 - 36,438,370 (+)EnsemblGRCm39 Ensembl
GRCm381936,348,329 - 36,460,970 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1936,348,309 - 36,460,970 (+)EnsemblGRCm38mm10GRCm38
MGSCv371936,453,557 - 36,530,694 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361936,444,211 - 36,521,348 (+)NCBIMGSCv36mm8
Celera1937,153,842 - 37,230,831 (+)NCBICelera
Cytogenetic Map19C2NCBI
cM Map1931.59NCBI
PCGF5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381091,156,219 - 91,284,337 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1091,163,012 - 91,284,337 (+)EnsemblGRCh38hg38GRCh38
GRCh371092,922,750 - 93,044,094 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361092,970,349 - 93,034,000 (+)NCBINCBI36Build 36hg18NCBI36
Build 341092,970,524 - 93,030,717NCBI
Celera1086,726,325 - 86,789,872 (+)NCBICelera
Cytogenetic Map10q23.32NCBI
HuRef1086,551,615 - 86,672,625 (+)NCBIHuRef
CHM1_11093,204,503 - 93,325,499 (+)NCBICHM1_1
T2T-CHM13v2.01092,039,909 - 92,167,660 (+)NCBIT2T-CHM13v2.0
Pcgf5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81243,476,450 - 243,592,603 (+)NCBIGRCr8
mRatBN7.21234,063,854 - 234,180,022 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1234,063,892 - 234,175,315 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1242,460,060 - 242,570,683 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01249,379,827 - 249,492,349 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01242,217,996 - 242,330,525 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01254,974,688 - 255,090,925 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1254,974,789 - 255,086,207 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01262,240,378 - 262,351,837 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41240,564,487 - 240,689,320 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1231,160,446 - 231,270,886 (+)NCBICelera
Cytogenetic Map1q53NCBI
Pcgf5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554251,919,228 - 1,979,874 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554251,913,711 - 1,980,800 (-)NCBIChiLan1.0ChiLan1.0
PCGF5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v28103,198,999 - 103,320,630 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan110103,204,359 - 103,325,945 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01087,908,298 - 88,029,923 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11091,492,201 - 91,555,749 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1091,492,201 - 91,549,737 (+)Ensemblpanpan1.1panPan2
PCGF5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1285,821,278 - 5,889,382 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl285,821,307 - 5,883,795 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha285,936,794 - 6,063,338 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0285,985,164 - 6,112,667 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl285,984,310 - 6,112,666 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1285,746,497 - 5,873,915 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0285,779,689 - 5,907,155 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0285,943,248 - 6,070,752 (+)NCBIUU_Cfam_GSD_1.0
Pcgf5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721341,568,986 - 41,625,766 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366013,207,250 - 3,267,372 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366013,201,589 - 3,268,990 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PCGF5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl14102,636,838 - 102,961,860 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.114102,827,140 - 102,961,862 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.214111,941,927 - 112,074,419 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PCGF5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1984,494,147 - 84,613,269 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl984,494,202 - 84,607,330 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604845,203,901 - 45,326,616 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pcgf5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247372,489,788 - 2,540,488 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247372,423,269 - 2,545,006 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Pcgf5
3994 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:338
Count of miRNA genes:142
Interacting mature miRNAs:155
Transcripts:ENSMUST00000062389, ENSMUST00000071267
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
13506250Renmq1_mrenal mercury accumulation QTL 1 (mouse)192738559461385705Mouse
10412251Mnp_mmodifier of Niemann Pick type C1 (mouse)Not determined192023431454234461Mouse
11039522Tbbr4_mTrypanosoma brucei brucei response 4 (mouse)19531332639313470Mouse
1301336Alcp23_malcohol preference locus 23 (mouse)Not determined191591260749912719Mouse
1558876W3q14_mweight 3 weeks QTL 14 (mouse)Not determined192231332653911504Mouse
1302019Pgia23_mproteoglycan induced arthritis 23 (mouse)Not determined19978745343787602Mouse
1301633Alcp24_malcohol preference locus 24 (mouse)Not determined191591260749912719Mouse
14928311Manh85_mmandible shape 85 (mouse)191191478945914789Mouse
1301639Stnn_mstriatal neuron number (mouse)Not determined193395195261420004Mouse
1301451Ath16_matherosclerosis 16 (mouse)Not determined192542691759427005Mouse
1300683Fembm7_mfemoral bone morphometry 7 (mouse)Not determined193014122461420004Mouse
4141659Pbwg20_mpostnatal body weight growth 20 (mouse)Not determined192137870555378928Mouse
4141019Tgq29_mtriglyceride QTL 29 (mouse)Not determined3459678661420004Mouse
1301942Pas13_mpulmonary adenoma susceptibility 13 (mouse)Not determined193014123161420004Mouse
10413881Moe2_mmodifier of epilepsy 2 (mouse)191492301648923138Mouse
1302004Lfp2_mlong free running period 2 (mouse)Not determined191829516252295381Mouse
1300923Bits4_mbitterness sensitivity 4 (mouse)Not determined19332321637323348Mouse
12790634Ebm1_mEpidermolysis Bullosa modifier 1 (mouse)192498843958988439Mouse
1300856Nobq2_mNew Zealand obese QTL 2 (mouse)Not determined193089788061420004Mouse
4141138Femwf11_mfemur work to failure 11 (mouse)Not determined2814034861420004Mouse
1301410Cd8mts6_mCD8 memory T cell subset 6 (mouse)Not determined193014123161420004Mouse
1301479Sluc1_msusceptibility to lung cancer 1 (mouse)Not determined193601694446761521Mouse
4142343Moen2_mmodifier of engrailed QTL 2 (mouse)Not determined192023431454234461Mouse
1302123Tlsr8_mthymic lymphoma suppressor region 8 (mouse)Not determined192513600242388916Mouse
1301800Faq10_mfluctuating asymmetry QTL 10 (mouse)Not determined19332321637323348Mouse
1300591Pas3_mpulmonary adenoma susceptibility 3 (mouse)Not determined19332321637323348Mouse
1302063Eae19_mexperimental allergic encephalomyelitis 19 (mouse)Not determined191829516252295381Mouse
1302126Skull26_mskull morphology 26 (mouse)Not determined19332321637323348Mouse
1301741Lith2_mlithogenic gene 2 (mouse)Not determined193299215861420004Mouse
1301228Iba4_minduction of brown adipocytes 4 (mouse)Not determined19930571543305821Mouse

Markers in Region
AI324127  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381936,412,029 - 36,412,142UniSTSGRCm38
MGSCv371936,486,519 - 36,486,632UniSTSGRCm37
Celera1937,186,657 - 37,186,770UniSTS
Cytogenetic Map19C2UniSTS
Whitehead/MRC_RH19339.77UniSTS
Pcgf5  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381936,437,152 - 36,437,363UniSTSGRCm38
MGSCv371936,511,642 - 36,511,853UniSTSGRCm37
Celera1937,211,771 - 37,211,982UniSTS
Cytogenetic Map19C2UniSTS
cM Map19 UniSTS
UniSTS:237928  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381936,416,027 - 36,416,346UniSTSGRCm38
MGSCv371936,490,517 - 36,490,836UniSTSGRCm37
Celera1937,190,661 - 37,190,980UniSTS
Cytogenetic Map19C2UniSTS
D10Mit157.2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map6D1UniSTS
Cytogenetic Map16B4UniSTS
Cytogenetic Map18E2UniSTS
Cytogenetic Map4C3UniSTS
Cytogenetic Map7B2UniSTS
Cytogenetic Map4D2.3UniSTS
Cytogenetic Map11E1UniSTS
Cytogenetic Map14E2.2UniSTS
Cytogenetic Map4C7UniSTS
Cytogenetic Map2H4UniSTS
Cytogenetic Map1FUniSTS
Cytogenetic Map6C3UniSTS
Cytogenetic Map11DUniSTS
Cytogenetic Map3G2UniSTS
Cytogenetic Map17A1UniSTS
Cytogenetic Map9F2UniSTS
Cytogenetic Map12F1UniSTS
Cytogenetic Map19C2UniSTS
Cytogenetic Map3BUniSTS
Cytogenetic Map8C1UniSTS
Cytogenetic Map18A2UniSTS
Cytogenetic Map3F2UniSTS
Cytogenetic Map14C3UniSTS
Cytogenetic Map8E1UniSTS
Cytogenetic Map8E2UniSTS
Cytogenetic Map5B1UniSTS
Cytogenetic Map18B1UniSTS
Cytogenetic Map9CUniSTS
Cytogenetic Map14C2UniSTS
Cytogenetic Map6A1UniSTS
Cytogenetic Map10B4UniSTS
Cytogenetic Map13D2.1UniSTS
Cytogenetic Map5E5UniSTS
Cytogenetic Map11B1.3UniSTS
Cytogenetic Map4D1UniSTS
Cytogenetic Map9A5.2UniSTS
Cytogenetic Map3F1UniSTS
Cytogenetic Map17E3UniSTS
Cytogenetic Map11B3UniSTS
Cytogenetic Map1H4UniSTS
Cytogenetic Map6A3UniSTS
Cytogenetic Map5E4-E5UniSTS
Cytogenetic Map15E1UniSTS
Cytogenetic Map13DUniSTS
Cytogenetic Map14BUniSTS
Cytogenetic Map14D1UniSTS
Cytogenetic Map7B4UniSTS
Cytogenetic Map8D3UniSTS
Cytogenetic MapXDUniSTS
Cytogenetic Map17A3.3UniSTS
Cytogenetic Map7E2UniSTS
Cytogenetic Map1H2.3UniSTS
Cytogenetic Map7A2UniSTS
Cytogenetic Map7F3UniSTS
Cytogenetic Map9F1UniSTS
Cytogenetic Map10C1UniSTS
Cytogenetic Map4E2UniSTS
Cytogenetic Map16A1UniSTS
Cytogenetic Map8B3.3UniSTS
Cytogenetic Map8D2UniSTS
Cytogenetic Map3DUniSTS
Cytogenetic Map15D2UniSTS
Cytogenetic Map17B1UniSTS
Cytogenetic Map7A3UniSTS
Cytogenetic Map15F1UniSTS
Cytogenetic Map16B2UniSTS
Cytogenetic Map7CUniSTS
Cytogenetic Map3F2.1UniSTS
Cytogenetic Map6F3UniSTS
Cytogenetic Map1C4UniSTS
Cytogenetic Map11E2UniSTS
Cytogenetic Map11B5UniSTS
Cytogenetic Map9F3UniSTS
Cytogenetic Map2BUniSTS
Cytogenetic Map13B3UniSTS
Cytogenetic Map9A4UniSTS
Cytogenetic Map5A3UniSTS
Cytogenetic Map2H1UniSTS
Cytogenetic Map16B1UniSTS
Cytogenetic Map1A5UniSTS
Cytogenetic Map11CUniSTS
Cytogenetic Map9E1UniSTS
Cytogenetic Map6G1UniSTS
Cytogenetic MapXA2UniSTS
Cytogenetic Map13B1UniSTS
Cytogenetic Map5E2UniSTS
Cytogenetic Map12C1UniSTS
Cytogenetic Map5FUniSTS
Cytogenetic Map4D3UniSTS
Cytogenetic Map10C2UniSTS
Cytogenetic Map9BUniSTS
Cytogenetic Map5G2UniSTS
Cytogenetic Map7F1UniSTS
Cytogenetic Map12C3UniSTS
Cytogenetic Map10A4UniSTS
Cytogenetic Map8A2UniSTS
Cytogenetic Map18A1UniSTS
Cytogenetic Map12A1.1UniSTS
Cytogenetic Map1C2UniSTS
Cytogenetic Map11B2UniSTS
Cytogenetic Map6E3UniSTS
Cytogenetic Map5C3.3UniSTS
Cytogenetic Map1BUniSTS
Cytogenetic Map17A3.1UniSTS
Cytogenetic Map7A1UniSTS
Cytogenetic Map2E5UniSTS
Cytogenetic Map11A1UniSTS
Cytogenetic Map4B1UniSTS
Cytogenetic Map15A2UniSTS
Cytogenetic Map8C3UniSTS
Cytogenetic Map2A3UniSTS
Cytogenetic Map5G3UniSTS
Cytogenetic Map4A3UniSTS
Cytogenetic Map2H3UniSTS
Cytogenetic Map8A1UniSTS
Cytogenetic Map8A1.1UniSTS
Cytogenetic Map16A3UniSTS
Cytogenetic Map10B1UniSTS
Cytogenetic Map19AUniSTS
Cytogenetic Map10A1UniSTS
Cytogenetic Map13D1UniSTS
Cytogenetic Map4A1UniSTS
Cytogenetic Map9A3UniSTS
Cytogenetic Map17CUniSTS
Cytogenetic Map1DUniSTS
Cytogenetic Map5E3UniSTS
Cytogenetic Map15D3UniSTS
Cytogenetic Map2H2UniSTS
Cytogenetic Map7D3UniSTS
Cytogenetic Map2A1UniSTS
Cytogenetic Map14C1UniSTS
Cytogenetic Map14E5UniSTS
Cytogenetic Map10CUniSTS
Cytogenetic Map18B2UniSTS
Cytogenetic Map2F1UniSTS
Cytogenetic Map10D3UniSTS
Cytogenetic Map17A2UniSTS
Cytogenetic Map2C3UniSTS
Cytogenetic Map1C3UniSTS
Cytogenetic Map17B2UniSTS
Cytogenetic Map5B2UniSTS
Cytogenetic Map5G1UniSTS
Cytogenetic Map4C6UniSTS
Cytogenetic Map13C3UniSTS
Cytogenetic Map2E1UniSTS
Cytogenetic Map17A3.2-A3.3UniSTS
Cytogenetic Map19C3UniSTS
Cytogenetic Map7E3UniSTS
Cytogenetic Map13C1UniSTS
Cytogenetic Map9E3.1UniSTS
Cytogenetic Map15E3UniSTS
Cytogenetic Map6B1UniSTS
Cytogenetic MapXE3UniSTS
Cytogenetic Map4C4UniSTS
Cytogenetic Map3E3UniSTS
Cytogenetic Map11A4UniSTS
Cytogenetic Map4C5UniSTS
Cytogenetic Map18B3UniSTS
Cytogenetic Map9A2UniSTS
Cytogenetic Map7E1UniSTS
Cytogenetic Map5D-E1UniSTS
Cytogenetic Map5B3UniSTS
Cytogenetic Map13A2-A3UniSTS
Cytogenetic Map5A2UniSTS
Cytogenetic Map4B3UniSTS
Cytogenetic Map1E4UniSTS
Cytogenetic Map17E4UniSTS
Cytogenetic Map1G2UniSTS
Cytogenetic Map15B3.1UniSTS
Cytogenetic Map12EUniSTS
Cytogenetic MapXA5UniSTS
Cytogenetic Map6A3.3UniSTS
Cytogenetic Map6G3UniSTS
Cytogenetic Map6F2UniSTS
Cytogenetic Map5C1UniSTS
Cytogenetic Map4D2.1UniSTS
Cytogenetic Map4A5UniSTS
Cytogenetic Map3F2.2UniSTS
Cytogenetic Map1E3-E4UniSTS
Cytogenetic Map9F1-F3UniSTS
Cytogenetic Map1C1.1UniSTS
Cytogenetic Map14D2UniSTS
Cytogenetic Map12A2UniSTS
Cytogenetic Map17A3-BUniSTS
Cytogenetic Map7F5UniSTS
Cytogenetic Map14A3UniSTS
Cytogenetic Map5G1.1UniSTS
Cytogenetic MapXF2-F4UniSTS
Cytogenetic Map7D2UniSTS
Cytogenetic Map2F3UniSTS
Cytogenetic Map10A3UniSTS
Cytogenetic MapXA7.3UniSTS
Cytogenetic Map9F1-F2UniSTS
Cytogenetic Map13A3.2UniSTS
Cytogenetic Map10A2UniSTS
Cytogenetic Map1C1UniSTS
Cytogenetic Map1A1UniSTS
Cytogenetic Map12D3UniSTS
Cytogenetic Map1A3-A5UniSTS
Cytogenetic Map2A2UniSTS
Cytogenetic Map3A1UniSTS
Cytogenetic MapXA3.3UniSTS
Cytogenetic Map16A-B1UniSTS
Cytogenetic Map1D2.3UniSTS
Cytogenetic Map6B2.3UniSTS
Cytogenetic Map2G3UniSTS
Cytogenetic MapXA2-A3.1UniSTS
Cytogenetic Map9A5.3UniSTS
Cytogenetic Map14A2-BUniSTS
Cytogenetic Map8E1-E2UniSTS
Cytogenetic Map8A3UniSTS
Cytogenetic Map1G3-H1UniSTS
Cytogenetic Map8B3-C1UniSTS
Cytogenetic Map19C1UniSTS
Cytogenetic Map8C5UniSTS
Cytogenetic Map8A4UniSTS
Cytogenetic Map15F3UniSTS
Cytogenetic Map14E4UniSTS
Cytogenetic Map4D2.2UniSTS
Cytogenetic MapXF5UniSTS
cM Map1040.0UniSTS
Whitehead Genetic1033.9UniSTS


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001368690 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001368691 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001368692 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001368693 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_029508 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011247392 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036161722 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AA472895 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC117769 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK002387 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK004240 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK017984 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK019998 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK040647 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK046682 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK079197 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK080025 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK146133 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC139258 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC139259 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC145590 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC145591 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466534 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CX224153 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DQ694332 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000062389   ⟹   ENSMUSP00000058730
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1936,387,148 - 36,433,592 (+)Ensembl
GRCm38.p6 Ensembl1936,409,748 - 36,456,192 (+)Ensembl
Ensembl Acc Id: ENSMUST00000071267   ⟹   ENSMUSP00000071245
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1936,356,468 - 36,433,604 (+)Ensembl
GRCm38.p6 Ensembl1936,379,068 - 36,456,204 (+)Ensembl
Ensembl Acc Id: ENSMUST00000224679   ⟹   ENSMUSP00000153681
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1936,356,506 - 36,433,343 (+)Ensembl
GRCm38.p6 Ensembl1936,379,106 - 36,455,943 (+)Ensembl
Ensembl Acc Id: ENSMUST00000224772   ⟹   ENSMUSP00000153066
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1936,356,506 - 36,433,343 (+)Ensembl
GRCm38.p6 Ensembl1936,379,106 - 36,455,943 (+)Ensembl
Ensembl Acc Id: ENSMUST00000224805
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1936,325,937 - 36,333,013 (+)Ensembl
GRCm38.p6 Ensembl1936,348,537 - 36,355,613 (+)Ensembl
Ensembl Acc Id: ENSMUST00000224859   ⟹   ENSMUSP00000153211
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1936,414,569 - 36,433,100 (+)Ensembl
GRCm38.p6 Ensembl1936,437,169 - 36,455,700 (+)Ensembl
Ensembl Acc Id: ENSMUST00000224971   ⟹   ENSMUSP00000153342
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1936,369,644 - 36,417,448 (+)Ensembl
GRCm38.p6 Ensembl1936,392,244 - 36,440,048 (+)Ensembl
Ensembl Acc Id: ENSMUST00000225050
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1936,411,984 - 36,412,489 (+)Ensembl
GRCm38.p6 Ensembl1936,434,584 - 36,435,089 (+)Ensembl
Ensembl Acc Id: ENSMUST00000225185
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1936,417,054 - 36,423,690 (+)Ensembl
GRCm38.p6 Ensembl1936,439,654 - 36,446,290 (+)Ensembl
Ensembl Acc Id: ENSMUST00000225411   ⟹   ENSMUSP00000153464
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1936,387,148 - 36,433,592 (+)Ensembl
GRCm38.p6 Ensembl1936,409,748 - 36,456,192 (+)Ensembl
Ensembl Acc Id: ENSMUST00000225920   ⟹   ENSMUSP00000153206
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1936,325,709 - 36,438,370 (+)Ensembl
GRCm38.p6 Ensembl1936,348,309 - 36,460,970 (+)Ensembl
RefSeq Acc Id: NM_001368690   ⟹   NP_001355619
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391936,325,729 - 36,438,370 (+)NCBI
GRCm381936,348,329 - 36,460,970 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001368691   ⟹   NP_001355620
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391936,387,148 - 36,438,370 (+)NCBI
GRCm381936,409,748 - 36,460,970 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001368692   ⟹   NP_001355621
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391936,325,729 - 36,438,370 (+)NCBI
GRCm381936,348,329 - 36,460,970 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001368693   ⟹   NP_001355622
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391936,387,148 - 36,438,370 (+)NCBI
GRCm381936,409,748 - 36,460,970 (+)NCBI
Sequence:
RefSeq Acc Id: NM_029508   ⟹   NP_083784
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391936,356,467 - 36,438,370 (+)NCBI
GRCm381936,379,067 - 36,460,970 (+)NCBI
MGSCv371936,453,557 - 36,530,694 (+)RGD
Celera1937,153,842 - 37,230,831 (+)RGD
cM Map19 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_011247392   ⟹   XP_011245694
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391936,387,462 - 36,438,364 (+)NCBI
GRCm381936,410,057 - 36,460,964 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036161722   ⟹   XP_036017615
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391936,387,460 - 36,438,364 (+)NCBI
Sequence:
RefSeq Acc Id: NP_083784   ⟸   NM_029508
- Peptide Label: isoform 2
- UniProtKB: B7ZP24 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011245694   ⟸   XM_011247392
- Peptide Label: isoform X1
- UniProtKB: Q9DCW8 (UniProtKB/Swiss-Prot),   Q9D3E5 (UniProtKB/Swiss-Prot),   Q3UK78 (UniProtKB/Swiss-Prot),   B7ZP23 (UniProtKB/Swiss-Prot),   B2RTD3 (UniProtKB/Swiss-Prot),   B7ZP24 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001355619   ⟸   NM_001368690
- Peptide Label: isoform 1
- UniProtKB: Q9DCW8 (UniProtKB/Swiss-Prot),   Q9D3E5 (UniProtKB/Swiss-Prot),   Q3UK78 (UniProtKB/Swiss-Prot),   B7ZP23 (UniProtKB/Swiss-Prot),   B2RTD3 (UniProtKB/Swiss-Prot),   B7ZP24 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001355621   ⟸   NM_001368692
- Peptide Label: isoform 2
- UniProtKB: B7ZP24 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001355620   ⟸   NM_001368691
- Peptide Label: isoform 1
- UniProtKB: Q9DCW8 (UniProtKB/Swiss-Prot),   Q9D3E5 (UniProtKB/Swiss-Prot),   Q3UK78 (UniProtKB/Swiss-Prot),   B7ZP23 (UniProtKB/Swiss-Prot),   B2RTD3 (UniProtKB/Swiss-Prot),   B7ZP24 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001355622   ⟸   NM_001368693
- Peptide Label: isoform 2
- UniProtKB: B7ZP24 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSMUSP00000071245   ⟸   ENSMUST00000071267
Ensembl Acc Id: ENSMUSP00000153206   ⟸   ENSMUST00000225920
Ensembl Acc Id: ENSMUSP00000153464   ⟸   ENSMUST00000225411
Ensembl Acc Id: ENSMUSP00000153342   ⟸   ENSMUST00000224971
Ensembl Acc Id: ENSMUSP00000153681   ⟸   ENSMUST00000224679
Ensembl Acc Id: ENSMUSP00000153211   ⟸   ENSMUST00000224859
Ensembl Acc Id: ENSMUSP00000153066   ⟸   ENSMUST00000224772
Ensembl Acc Id: ENSMUSP00000058730   ⟸   ENSMUST00000062389
RefSeq Acc Id: XP_036017615   ⟸   XM_036161722
- Peptide Label: isoform X2
- UniProtKB: B7ZP24 (UniProtKB/TrEMBL)
Protein Domains
RING-type

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q3UK78-F1-model_v2 AlphaFold Q3UK78 1-256 view protein structure

Promoters
RGD ID:13679358
Promoter ID:EPDNEW_M23828
Type:initiation region
Name:Pcgf5_2
Description:Mus musculus polycomb group ring finger 5 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M23829  EPDNEW_M23830  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381936,348,517 - 36,348,577EPDNEW
RGD ID:13679360
Promoter ID:EPDNEW_M23829
Type:initiation region
Name:Pcgf5_3
Description:Mus musculus polycomb group ring finger 5 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M23828  EPDNEW_M23830  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381936,349,579 - 36,349,639EPDNEW
RGD ID:13679362
Promoter ID:EPDNEW_M23830
Type:multiple initiation site
Name:Pcgf5_1
Description:Mus musculus polycomb group ring finger 5 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M23828  EPDNEW_M23829  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381936,409,748 - 36,409,808EPDNEW
RGD ID:6830277
Promoter ID:MM_KWN:26930
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   Spleen
Transcripts:ENSMUST00000071267,   UC008HHK.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361936,483,979 - 36,484,479 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1923505 AgrOrtholog
Ensembl Genes ENSMUSG00000024805 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000062389 ENTREZGENE
  ENSMUST00000062389.6 UniProtKB/Swiss-Prot
  ENSMUST00000071267 ENTREZGENE
  ENSMUST00000071267.14 UniProtKB/Swiss-Prot
  ENSMUST00000224679.2 UniProtKB/Swiss-Prot
  ENSMUST00000224772.2 UniProtKB/TrEMBL
  ENSMUST00000224859.2 UniProtKB/TrEMBL
  ENSMUST00000224971.2 UniProtKB/TrEMBL
  ENSMUST00000225411 ENTREZGENE
  ENSMUST00000225411.2 UniProtKB/Swiss-Prot
  ENSMUST00000225920 ENTREZGENE
  ENSMUST00000225920.2 UniProtKB/Swiss-Prot
Gene3D-CATH 3.30.40.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro PcG_RING_finger UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RAWUL UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_RING UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_RING/FYVE/PHD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_RING_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:76073 UniProtKB/Swiss-Prot
MGD MGI:1923505 ENTREZGENE
NCBI Gene Pcgf5 ENTREZGENE
PANTHER POLYCOMB GROUP RING FINGER PROTEIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  POLYCOMB GROUP RING FINGER PROTEIN 5 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam RAWUL UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  zf-C3HC4_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Pcgf5 PhenoGen
PROSITE ZF_RING_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZF_RING_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART RING UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP RING/U-box UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A286YD06_MOUSE UniProtKB/TrEMBL
  A0A286YDQ6_MOUSE UniProtKB/TrEMBL
  B2RTD3 ENTREZGENE
  B7ZP23 ENTREZGENE
  B7ZP24 ENTREZGENE, UniProtKB/TrEMBL
  PCGF5_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
  Q9D3E5 ENTREZGENE
  Q9DCW8 ENTREZGENE
UniProt Secondary B2RTD3 UniProtKB/Swiss-Prot
  B7ZP23 UniProtKB/Swiss-Prot
  Q9D3E5 UniProtKB/Swiss-Prot
  Q9DCW8 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2024-08-26 Pcgf5  polycomb group ring finger 5  0610009F02Rik  RIKEN cDNA 0610009F02 gene  Symbol and/or name updated 27372883 PROVISIONAL
2024-08-21 0610009F02Rik  RIKEN cDNA 0610009F02 gene  Pcgf5  polycomb group ring finger 5  Symbol and/or name change 5135510 APPROVED