Dxo (decapping exoribonuclease) - Rat Genome Database
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Gene: Dxo (decapping exoribonuclease) Mus musculus
Analyze
Symbol: Dxo
Name: decapping exoribonuclease
RGD ID: 1619046
MGI Page MGI
Description: Exhibits several functions, including 5'-3' exonuclease activity; hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides; and magnesium ion binding activity. Involved in RNA destabilization and nucleic acid metabolic process. Predicted to localize to cytosol; nucleoplasm; and plasma membrane. Orthologous to human DXO (decapping exoribonuclease); PARTICIPATES IN 3'-end pre-mRNA processing pathway; RNA polymerase II transcription termination pathway; INTERACTS WITH 1,2-dimethylhydrazine; 2,3,7,8-tetrachlorodibenzodioxine; 4,4'-diaminodiphenylmethane.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: 5'-3' exoribonuclease DXO; decapping and exoribonuclease protein; deNADding enzyme DXO; Dom3; Dom3z; NAD-capped RNA hydrolase DXO; NG6
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391735,055,972 - 35,058,162 (+)NCBIGRCm39mm39
GRCm381734,836,996 - 34,839,187 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1734,837,019 - 34,839,233 (+)EnsemblGRCm38mm10GRCm38
MGSCv371734,973,964 - 34,976,131 (+)NCBIGRCm37mm9NCBIm37
MGSCv361734,445,139 - 34,447,289 (+)NCBImm8
Celera1737,932,348 - 37,934,515 (+)NCBICelera
Cytogenetic Map17B1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytosol  (IBA,ISO)
nucleoplasm  (ISO)
nucleus  (IBA,ISO)
plasma membrane  (ISO)

Molecular Pathway Annotations     Click to see Annotation Detail View
References

Additional References at PubMed
PMID:10686478   PMID:10871872   PMID:10922068   PMID:12477932   PMID:14656967   PMID:15489334   PMID:15782199   PMID:16141072   PMID:21677750   PMID:21873635   PMID:23523372   PMID:28283058  
PMID:30180947   PMID:31777937   PMID:32374864  


Genomics

Comparative Map Data
Dxo
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391735,055,972 - 35,058,162 (+)NCBIGRCm39mm39
GRCm381734,836,996 - 34,839,187 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1734,837,019 - 34,839,233 (+)EnsemblGRCm38mm10GRCm38
MGSCv371734,973,964 - 34,976,131 (+)NCBIGRCm37mm9NCBIm37
MGSCv361734,445,139 - 34,447,289 (+)NCBImm8
Celera1737,932,348 - 37,934,515 (+)NCBICelera
Cytogenetic Map17B1NCBI
DXO
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl631,969,810 - 31,972,290 (-)EnsemblGRCh38hg38GRCh38
GRCh38631,969,811 - 31,972,290 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37631,937,588 - 31,940,032 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36632,045,567 - 32,048,011 (-)NCBINCBI36hg18NCBI36
Build 34632,045,566 - 32,048,011NCBI
Celera633,537,350 - 33,539,794 (-)NCBI
Cytogenetic Map6p21.33NCBI
HuRef631,724,525 - 31,726,969 (-)NCBIHuRef
CHM1_1631,939,669 - 31,942,113 (-)NCBICHM1_1
Dxo
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.0204,517,307 - 4,519,391 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl204,517,307 - 4,519,389 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0206,597,106 - 6,599,190 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4204,093,718 - 4,095,802 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1204,093,893 - 4,096,049 (-)NCBI
Celera204,035,291 - 4,037,375 (+)NCBICelera
Cytogenetic Map20p12NCBI
Dxo
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955437481,554 - 484,989 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955437482,866 - 484,989 (-)NCBIChiLan1.0ChiLan1.0
DXO
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1632,517,086 - 32,519,566 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl632,517,086 - 32,519,566 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0631,630,523 - 31,632,363 (-)NCBIMhudiblu_PPA_v0panPan3
DXO
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl121,424,591 - 1,426,452 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.1121,424,584 - 1,426,275 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dxo
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049367271,576,823 - 1,579,158 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DXO
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl724,050,397 - 24,059,997 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1724,057,670 - 24,060,108 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2727,752,093 - 27,754,531 (+)NCBISscrofa10.2Sscrofa10.2susScr3
DXO
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11740,049,679 - 40,052,114 (+)NCBI
ChlSab1.1 Ensembl1740,050,257 - 40,052,050 (+)Ensembl
Dxo
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462475424,281,099 - 24,283,403 (+)NCBI

Position Markers
AW214248  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381734,839,265 - 34,839,374UniSTSGRCm38
MGSCv371734,976,210 - 34,976,319UniSTSGRCm37
Celera1737,934,594 - 37,934,707UniSTS
Cytogenetic Map17B1UniSTS
Whitehead/MRC_RH17473.2UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
10412276Leci2_mleukocyte endothelial cell interactions 2 (mouse)Not determined17312791337128037Mouse
1300890Bhr3_mbronchial hyperresponsiveness 3 (mouse)Not determined17392461548559063Mouse
4141215Mnic1_mmacronutrient intake, carbohydrate 1 (mouse)Not determined480447745359340Mouse
1300706Alan1_malloantigen response 1 (mouse)Not determined17480447746158776Mouse
1357789Kdnw3_mkidney weight 3 (mouse)Not determined17480447747574740Mouse
4141272Tfv1_mtotal food volume 1 (mouse)Not determined480447765330362Mouse
10043949Pbft7_mpercent body fat 7 (mouse)Not determined17667496240674962Mouse
1301935Skull24_mskull morphology 24 (mouse)Not determined17836594042366175Mouse
1300787Cd8mts5_mCD8 memory T cell subset 5 (mouse)Not determined17836594042366175Mouse
1301338Lmr1_mleishmaniasis resistance 1 (mouse)Not determined17986241186688972Mouse
1302028Asbb3_mautoimmune susceptibility in C57BL/6J and BALB/c 3 (mouse)Not determined171065914544659245Mouse
4142342Lfnq4_mlung function QTL 4 (mouse)Not determined1098759739053168Mouse
4141067Hbnr2_mHeligmosomoides bakeri nematode resistance 2 (mouse)Not determined1166699745667145Mouse
14747010Mancz14_mmandible centroid size 14 (mouse)171177921045779210Mouse
4142150Stheal11_msoft tissue heal 11 (mouse)Not determined171206732483054339Mouse
12904946Tammq8_mtibialis anterior muscle mass QTL 8 (mouse)171223281346232813Mouse
13524847Asrq8a_macoustic startle response 8a (mouse)171242798746427987Mouse
11081168Tir7_mtrypanosome infection response 7 (mouse)171390439847904522Mouse
1300914Pcir4_mperiosteal circumference 4 (mouse)Not determined171484267848842786Mouse
1558886Lgth9_mbody length 9 (mouse)Not determined171484267848842786Mouse
1302070Tbbmd7_mtotal body bone mineral density 7 (mouse)Not determined171484267848842786Mouse
1300995Fembrs4_mfemur breaking strength 4 (mouse)Not determined171484267848842786Mouse
1302140Wta4_mweight adult 4 (mouse)Not determined171660074750600869Mouse
1302152Skull25_mskull morphology 25 (mouse)Not determined171660074750600869Mouse
1301505Tir1_mtrypanosome infection response 1 (mouse)Not determined171660074750600869Mouse
10412083Sm2_msusceptibility to Schistosoma mansoni infection 2 (mouse)Not determined171681096950811104Mouse
1302042Acsns3_mAngiostrongylus costaricensis nematode susceptibility 3 (mouse)Not determined171724323451243371Mouse
1300535Char3_mP. chabaudi malaria resistance QTL 3 (mouse)Not determined171724323451243371Mouse
10412214Sxbq3_mSGC/Knj cross B6 QTL 3 (mouse)Not determined171724323451243371Mouse
13452396Leusq3_mleucocytosis susceptibility QTL 3 (mouse)171724323451243371Mouse
13452399Leusq6_mleucocytosis susceptibility QTL 6 (mouse)171724323451243371Mouse
1301840Ssial4_msusceptibility to sialadenitiss 4 (mouse)Not determined171795643651959238Mouse
1301331Lbw1_mlupus NZB x NZW 1 (mouse)Not determined171819938152202007Mouse
1301056Pas2_mpulmonary adenoma susceptibility 2 (mouse)Not determined171820316552205351Mouse
15039354Nmrs36_mNAFLD-associated magnetic resonance shift 36 (mouse)171883413352834133Mouse
1301454Eae5_msusceptibility to experimental allergic encephalomyelitis 5 (mouse)Not determined172430185958301973Mouse
10412198Sst5_msusceptibility to tuberculosis 5 (mouse)Not determined172485760955405969Mouse
10412196Bbaa28_mB.burgdorferi-associated arthritis 28 (mouse)Not determined172536594043665344Mouse
10412204Bbaa29_mB.burgdorferi-associated arthritis 29 (mouse)Not determined172574029459740461Mouse
1558758Kcal2_mkilocalorie 2 (mouse)Not determined172618203852604676Mouse
1300602Eye2_meye weight 2 (mouse)Not determined172628636340794146Mouse
1302005Loco2_mlocomotor activity 2 (mouse)Not determined172657408160574223Mouse
11075105Modc1_mmodifier of Odc1 (mouse)172749681845311728Mouse
15039348Nmrs37_mNAFLD-associated magnetic resonance shift 37 (mouse)172750432261504322Mouse
10045977Tir9_mtrypanosome infection response 9 (mouse)Not determined172765914543574223Mouse
1300703Uvbi2_mUVB induced immunosuppression 2 (mouse)Not determined172831148062311728Mouse
1300589Myaa2_mmodifier of Yaa 2 (mouse)Not determined172982162963821740Mouse
4140955Plgr1_mplague resistance locus 1 (mouse)Not determined3072257564722705Mouse
4141357Mrdq1_mmodifier of retinal degeneration QTL 1 (mouse)Not determined3076892947728778Mouse
1300692Blmpf1_mbleomycin-induced pulmonary fibrosis 1 (mouse)Not determined173184267837333884Mouse
25394538Skmw84_mskeletal muscle weight 84, TA (mouse)173244145235301060Mouse
26884379Skwq5_mskull length QTL 5, 5 week (mouse)173290000053800000Mouse
1302189Dps3_mdelta power in slow-wave sleep 3 (mouse)Not determined173360074735939288Mouse
1301759Sles1_msystemic lupus erythmatosus suppressor 1 (mouse)Not determined173400091634956961Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:3205
Count of miRNA genes:768
Interacting mature miRNAs:984
Transcripts:ENSMUST00000046244, ENSMUST00000172612, ENSMUST00000173063, ENSMUST00000173644, ENSMUST00000173768, ENSMUST00000173874, ENSMUST00000173995, ENSMUST00000174092, ENSMUST00000174569, ENSMUST00000174684, ENSMUST00000180043
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001163770 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_033613 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011246251 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017317211 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036160265 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_003952077 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004939460 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_385263 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AF049850 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK188270 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC004713 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BG071924 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BX522724 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466666 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CJ061424 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CT025759 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CT573030 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CU406965 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CU463176 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000046244   ⟹   ENSMUSP00000047018
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1734,837,019 - 34,839,233 (+)Ensembl
RefSeq Acc Id: ENSMUST00000172612   ⟹   ENSMUSP00000133376
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1734,838,324 - 34,839,137 (+)Ensembl
RefSeq Acc Id: ENSMUST00000173063   ⟹   ENSMUSP00000134164
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1734,837,657 - 34,839,138 (+)Ensembl
RefSeq Acc Id: ENSMUST00000173644
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1734,837,082 - 34,838,359 (+)Ensembl
RefSeq Acc Id: ENSMUST00000173768
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1734,838,548 - 34,839,123 (+)Ensembl
RefSeq Acc Id: ENSMUST00000173874   ⟹   ENSMUSP00000134332
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1734,837,019 - 34,838,648 (+)Ensembl
RefSeq Acc Id: ENSMUST00000173995   ⟹   ENSMUSP00000134583
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1734,837,248 - 34,837,977 (+)Ensembl
RefSeq Acc Id: ENSMUST00000174092   ⟹   ENSMUSP00000133587
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1734,837,399 - 34,839,137 (+)Ensembl
RefSeq Acc Id: ENSMUST00000174569   ⟹   ENSMUSP00000133448
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1734,838,295 - 34,839,137 (+)Ensembl
RefSeq Acc Id: ENSMUST00000174684   ⟹   ENSMUSP00000134653
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1734,837,993 - 34,838,683 (+)Ensembl
RefSeq Acc Id: ENSMUST00000180043   ⟹   ENSMUSP00000137234
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1734,837,019 - 34,839,186 (+)Ensembl
RefSeq Acc Id: NM_001163770   ⟹   NP_001157242
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391735,055,995 - 35,058,162 (+)NCBI
GRCm381734,837,019 - 34,839,186 (+)NCBI
MGSCv371734,973,964 - 34,976,131 (+)RGD
Celera1737,932,348 - 37,934,515 (+)RGD
cM Map17 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_033613   ⟹   NP_291091
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391735,055,995 - 35,058,162 (+)NCBI
GRCm381734,837,019 - 34,839,186 (+)NCBI
MGSCv371734,973,964 - 34,976,131 (+)RGD
Celera1737,932,348 - 37,934,515 (+)RGD
cM Map17 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_011246251   ⟹   XP_011244553
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391735,055,998 - 35,058,157 (+)NCBI
GRCm381734,837,042 - 34,839,181 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017317211   ⟹   XP_017172700
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391735,055,980 - 35,058,162 (+)NCBI
GRCm381734,837,035 - 34,839,187 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036160265   ⟹   XP_036016158
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391735,056,018 - 35,058,162 (+)NCBI
RefSeq Acc Id: XR_003952077
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391735,055,972 - 35,058,162 (+)NCBI
GRCm381734,836,996 - 34,839,186 (+)NCBI
Sequence:
RefSeq Acc Id: XR_004939460
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391735,056,019 - 35,058,162 (+)NCBI
RefSeq Acc Id: XR_385263
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391735,055,995 - 35,058,162 (+)NCBI
GRCm381734,837,031 - 34,839,186 (+)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: NP_291091   ⟸   NM_033613
- UniProtKB: O70348 (UniProtKB/Swiss-Prot),   A0A0R4J288 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001157242   ⟸   NM_001163770
- UniProtKB: O70348 (UniProtKB/Swiss-Prot),   A0A0R4J288 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011244553   ⟸   XM_011246251
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_017172700   ⟸   XM_017317211
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: ENSMUSP00000047018   ⟸   ENSMUST00000046244
RefSeq Acc Id: ENSMUSP00000133376   ⟸   ENSMUST00000172612
RefSeq Acc Id: ENSMUSP00000133448   ⟸   ENSMUST00000174569
RefSeq Acc Id: ENSMUSP00000134653   ⟸   ENSMUST00000174684
RefSeq Acc Id: ENSMUSP00000133587   ⟸   ENSMUST00000174092
RefSeq Acc Id: ENSMUSP00000134164   ⟸   ENSMUST00000173063
RefSeq Acc Id: ENSMUSP00000134332   ⟸   ENSMUST00000173874
RefSeq Acc Id: ENSMUSP00000134583   ⟸   ENSMUST00000173995
RefSeq Acc Id: ENSMUSP00000137234   ⟸   ENSMUST00000180043
RefSeq Acc Id: XP_036016158   ⟸   XM_036160265
- Peptide Label: isoform X1
Protein Domains
RAI1

Promoters
RGD ID:13675742
Promoter ID:EPDNEW_M22020
Type:initiation region
Name:Dxo_1
Description:Mus musculus decapping exoribonuclease , transcript variant 2,mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381734,837,105 - 34,837,165EPDNEW
RGD ID:6828014
Promoter ID:MM_KWN:23228
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:NM_001163770,   OTTMUST00000082714,   OTTMUST00000082717,   OTTMUST00000082718,   OTTMUST00000082719,   OTTMUST00000082720,   UC008CDR.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361734,972,836 - 34,974,642 (+)MPROMDB
RGD ID:6848679
Promoter ID:MM_TRO:4319
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_4Hour,   Brain,   Lung
Transcripts:MTR009649.17.1045.4
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361734,974,774 - 34,975,274 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1890444 AgrOrtholog
Ensembl Genes ENSMUSG00000040482 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000047018 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSP00000133376 UniProtKB/TrEMBL
  ENSMUSP00000133448 UniProtKB/TrEMBL
  ENSMUSP00000133587 UniProtKB/TrEMBL
  ENSMUSP00000134164 UniProtKB/TrEMBL
  ENSMUSP00000134332 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSP00000134583 UniProtKB/TrEMBL
  ENSMUSP00000134653 UniProtKB/TrEMBL
  ENSMUSP00000137234 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000046244 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUST00000172612 UniProtKB/TrEMBL
  ENSMUST00000173063 UniProtKB/TrEMBL
  ENSMUST00000173874 UniProtKB/TrEMBL
  ENSMUST00000173995 UniProtKB/TrEMBL
  ENSMUST00000174092 UniProtKB/TrEMBL
  ENSMUST00000174569 UniProtKB/TrEMBL
  ENSMUST00000174684 UniProtKB/TrEMBL
  ENSMUST00000180043 ENTREZGENE, UniProtKB/TrEMBL
InterPro RAI1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RAI1-like_fam UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:112403 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:1890444 ENTREZGENE
NCBI Gene 112403 ENTREZGENE
PANTHER PTHR12395 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam RAI1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Dxo PhenoGen
UniGene Mm.275309 ENTREZGENE
UniProt A0A0R4J288 ENTREZGENE, UniProtKB/TrEMBL
  DXO_MOUSE UniProtKB/Swiss-Prot
  G3UWP7_MOUSE UniProtKB/TrEMBL
  G3UWW3_MOUSE UniProtKB/TrEMBL
  G3UX82_MOUSE UniProtKB/TrEMBL
  G3UYP2_MOUSE UniProtKB/TrEMBL
  G3UZ39_MOUSE UniProtKB/TrEMBL
  G3UZP8_MOUSE UniProtKB/TrEMBL
  G3UZV8_MOUSE UniProtKB/TrEMBL
  O70348 ENTREZGENE
UniProt Secondary Q99KD8 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-10-22 Dxo  decapping exoribonuclease  Dom3z  DOM-3 homolog Z (C. elegans)  Symbol and/or name change 5135510 APPROVED