1700102P08Rik (RIKEN cDNA 1700102P08 gene)

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Gene: 1700102P08Rik (RIKEN cDNA 1700102P08 gene) Mus musculus

Analyze

Symbol:

1700102P08Rik

Name:

RIKEN cDNA 1700102P08 gene

RGD ID:

1619042

MGI Page

MGI

Description:

Orthologous to human C3orf62 (chromosome 3 open reading frame 62); INTERACTS WITH (-)-demecolcine (ortholog); 2-hydroxypropanoic acid (ortholog); 5-aza-2'-deoxycytidine (ortholog).

Type:

protein-coding

RefSeq Status:

VALIDATED

Also known as:

AI593206; hypothetical protein LOC112418; uncharacterized protein C3orf62 homolog

RGD Orthologs

Human

Rat

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

Latest Assembly:

GRCm38 - Mouse Genome Assembly GRCm38

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	9	108,270,023 - 108,275,416 (+)	NCBI	GRCm39		mm39
GRCm38	9	108,392,824 - 108,411,440 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	9	108,392,805 - 108,410,934 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	9	108,295,165 - 108,300,101 (+)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	9	108,250,929 - 108,255,858 (+)	NCBI			mm8
Celera	9	108,002,041 - 108,006,978 (+)	NCBI		Celera
Cytogenetic Map	9	F2	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autosomal recessive limb-girdle muscular dystrophy type 2P (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(-)-demecolcine (ISO)

2-hydroxypropanoic acid (ISO)

5-aza-2'-deoxycytidine (ISO)

aflatoxin B1 (ISO)

benzo[a]pyrene (ISO)

bis(2-ethylhexyl) phthalate (ISO)

butanal (ISO)

doxorubicin (ISO)

ethyl methanesulfonate (ISO)

hydralazine (ISO)

methyl methanesulfonate (ISO)

ozone (ISO)

rac-lactic acid (ISO)

rotenone (ISO)

sodium arsenite (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

biological_process (ND)

Cellular Component

cellular_component (ND)

Molecular Function

molecular_function (ND)

protein binding (ISO)

References

References - curated


1.	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2.	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:10349636	PMID:11042159	PMID:11076861	PMID:11217851	PMID:12466851	PMID:12477932	PMID:14610273	PMID:15489334	PMID:16141072	PMID:16141073

Genomics

Comparative Map Data

1700102P08Rik
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	9	108,270,023 - 108,275,416 (+)	NCBI	GRCm39		mm39
GRCm38	9	108,392,824 - 108,411,440 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	9	108,392,805 - 108,410,934 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	9	108,295,165 - 108,300,101 (+)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	9	108,250,929 - 108,255,858 (+)	NCBI			mm8
Celera	9	108,002,041 - 108,006,978 (+)	NCBI		Celera
Cytogenetic Map	9	F2	NCBI

C3orf62
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38.p13 Ensembl	3	49,268,596 - 49,277,232 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh38	3	49,268,596 - 49,277,232 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh37	3	49,306,030 - 49,314,864 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	3	49,281,223 - 49,289,456 (-)	NCBI	NCBI36		hg18	NCBI36
Celera	3	49,269,717 - 49,277,952 (-)	NCBI
Cytogenetic Map	3	p21.31	NCBI
HuRef	3	49,363,351 - 49,371,827 (-)	NCBI		HuRef
CHM1_1	3	49,258,841 - 49,267,310 (-)	NCBI		CHM1_1

LOC498675
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rnor_6.0	8	117,170,620 - 117,175,235 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	8	117,170,620 - 117,175,235 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	8	116,518,983 - 116,523,598 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
Celera	8	108,382,743 - 108,387,341 (+)	ENTREZGENE		Celera
Cytogenetic Map	8	q32	NCBI

LOC102011802
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955532	1,243,732 - 1,245,499 (-)	NCBI	ChiLan1.0	ChiLan1.0

C3H3orf62
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	3	50,273,460 - 50,279,995 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	3	50,273,460 - 50,279,995 (-)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	3	49,191,640 - 49,199,806 (-)	NCBI	Mhudiblu_PPA_v0		panPan3

C20H3orf62
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1 Ensembl	20	39,953,764 - 39,956,754 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
CanFam3.1	20	39,953,285 - 39,959,112 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1

CUNH3orf62
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
SpeTri2.0	NW_004936529	934,641 - 940,858 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

C13H3orf62
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	13	31,826,945 - 31,904,240 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	13	31,840,281 - 31,848,825 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	13	35,075,788 - 35,079,841 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CUNH3orf62
(Chlorocebus sabaeus - African green monkey)

Vervet Assembly	Chr	Position (strand)	Source	Genome Browsers
Vervet Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	22	10,660,873 - 10,672,712 (-)	NCBI
ChlSab1.1 Ensembl	22	10,666,310 - 10,671,639 (-)	Ensembl

CUNH3orf62
(Heterocephalus glaber - naked mole-rat)

Molerat Assembly	Chr	Position (strand)	Source	Genome Browsers
Molerat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624730	3,249,440 - 3,252,795 (-)	NCBI

Position Markers

AW555420

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	9	108,392,186 - 108,392,268	UniSTS	GRCm38
MGSCv37	9	108,294,517 - 108,294,599	UniSTS	GRCm37
Celera	9	108,001,393 - 108,001,475	UniSTS
Cytogenetic Map	9	F2	UniSTS
cM Map	9	60.0	UniSTS
Whitehead/MRC_RH	9	1109.71	UniSTS

AI593206

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	9	108,397,568 - 108,397,715	UniSTS	GRCm38
MGSCv37	9	108,299,899 - 108,300,046	UniSTS	GRCm37
Celera	9	108,006,776 - 108,006,923	UniSTS
Cytogenetic Map	9	F2	UniSTS
Whitehead/MRC_RH	9	1110.61	UniSTS

Usp4

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	9	108,392,079 - 108,392,270	UniSTS	GRCm38
MGSCv37	9	108,294,410 - 108,294,601	UniSTS	GRCm37
Celera	9	108,001,286 - 108,001,477	UniSTS
Cytogenetic Map	9	F2	UniSTS
cM Map	9	60.0	UniSTS

QTLs in Region (GRCm38)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
13207569	Tcq13_m	total cholesterol QTL 13 (mouse)					9	59990000	109260000	Mouse
4141833	W10q13_m	weight 10 weeks QTL 13 (mouse)			Not determined			63332429	120362868	Mouse
4141545	Tailaq2_m	tail length adjusted QTL 2 (mouse)			Not determined			63332429	120362868	Mouse
1357635	Splq4_m	spleen weight QTL 4 (mouse)			Not determined		9	63332429	120362868	Mouse
1302065	El1_m	epilepsy 1 (mouse)			Not determined		9	75775364	114474379	Mouse
10054492	El7_m	epilepsy 7 (mouse)			Not determined		9	75775364	114474379	Mouse
1301407	Rapop2_m	radiation-induced apoptosis 2 (mouse)			Not determined		9	76535936	110536130	Mouse
1301192	Skts6_m	skin tumor susceptibility 6 (mouse)			Not determined		9	78640645	112640755	Mouse
10401247	Bglu14_m	blood glucose level 14 (mouse)			Not determined		9	79397810	113397888	Mouse
1301732	Char1_m	P. chabaudi malaria resistance QTL 1 (mouse)			Not determined		9	81798268	115798392	Mouse
1300884	Sluc11_m	susceptibility to lung cancer 11 (mouse)			Not determined		9	82910333	116910428	Mouse
1357461	Idd2_m	insulin dependent diabetes susceptibility 2 (mouse)			Not determined		9	82910333	116910428	Mouse
10766454	Char10_m	P. chabaudi malaria resistance QTL 10 (mouse)					9	82910333	116910428	Mouse
1301487	Nociq1_m	nociceptive sensitivity inflammatory QTL 1 (mouse)			Not determined		9	84528818	118528921	Mouse
10412180	Msam3_m	muscle, skeletal, activity measure 3 (mouse)			Not determined		9	85897510	108641186	Mouse
1300549	Bbaa17_m	B. burgdorferi-associated arthritis 17 (mouse)			Not determined		9	86230401	120230530	Mouse
1302103	Dob2_m	dietary obesity 2 (mouse)			Not determined		9	86239845	120289624	Mouse
11251716	Siim2_m	stress induced immobility 2 (mouse)					9	86748483	120748483	Mouse
12880422	V25Dq6_m	vitamin D inactive form serum level QTL 6 (mouse)					9	87800000	121800000	Mouse
10412242	Alpq8_m	alcohol preference QTL 8 (mouse)			Not determined		9	89284925	123284925	Mouse
1301649	Psl1_m	promotion susceptibility QTL 1 (mouse)			Not determined		9	89412277	123412396	Mouse
18182932	Metl3_m	metabolite locus 3, N-acetylglutamate (mouse)					9	89563342	123563342	Mouse
1357657	Pymr_m	Plasmodium yoelli malaria resistance (mouse)			Not determined		9	89977005	118938021	Mouse
12910770	Splic1_m	spleen iron content 1 (mouse)					9	91413879	124595110	Mouse
12910772	Lvic6_m	liver iron content 6 (mouse)					9	91413879	124595110	Mouse
12910773	Splic3_m	spleen iron content 3 (mouse)					9	91413879	124595110	Mouse
1558767	Skmw11_m	skeletal muscle weight 11 (mouse)			Not determined		9	91641084	124595110	Mouse
13463474	Hbbcq5_m	hemoglobin concentration QTL 5 (mouse)					9	91641084	124595110	Mouse
13463475	Hctq7_m	hematocrit QTL 7 (mouse)					9	91641084	124595110	Mouse
13463477	Rbc9_m	red blood cell count 9 (mouse)					9	91641084	124595110	Mouse
13463478	Mchq18_m	mean corpuscular hemoglobin QTL 18 (mouse)					9	91641084	124595110	Mouse
13463480	Mchcq2_m	mean corpuscular hemoglobin concentration QTL 2 (mouse)					9	91641084	124595110	Mouse
12904937	Edlmmq9_m	extensor digitorum longus muscle mass QTL 9 (mouse)					9	91683173	124595110	Mouse
12904947	Tammq7_m	tibialis anterior muscle mass QTL 7 (mouse)					9	91683173	124595110	Mouse
12904961	Gmmq7_m	gastrocnemius muscle mass QTL 7 (mouse)					9	91683173	124595110	Mouse
1302001	Bdln5_m	body length 5 (mouse)			Not determined		9	93762590	124595110	Mouse
1301484	Bwq6_m	body weight (mouse)			Not determined		9	93762590	124595110	Mouse
14746992	Manh67_m	mandible shape 67 (mouse)					9	94036768	124595110	Mouse
11081166	Psl5_m	promotion susceptibility QTL 5 (mouse)					9	94981301	112872929	Mouse
11537364	Cnes5_m	C. neoformans susceptibility locus 5 (mouse)					9	96917590	124595110	Mouse
1301297	Lcho1_m	liver cholesterol 1 (mouse)			Not determined		9	101060861	124595110	Mouse
1357627	Tgq2_m	triglyceride QTL 2 (mouse)			Not determined		9	102000187	124595110	Mouse
1357648	Obq18_m	obesity QTL 18 (mouse)			Not determined		9	102000187	124595110	Mouse
1301789	Pbwg4_m	postnatal body weight growth 4 (mouse)			Not determined		9	103289445	124595110	Mouse
10412290	Pvacm1l_m	plasma vascular cell adhesion molecule 1 levels (mouse)			Not determined		9	103289445	124595110	Mouse
12879896	Berr3_m	berghei resistance locus 3 (mouse)					9	103289445	124595110	Mouse

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	92
Count of miRNA genes:	90
Interacting mature miRNAs:	92
Transcripts:	ENSMUST00000035234
Prediction methods:	Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_053216	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006511628	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC161260	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AF026469	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AI593206	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK007115	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC061048	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH466560	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSMUST00000035234 ⟹ ENSMUSP00000035234

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38.p6 Ensembl	9	108,392,834 - 108,397,770 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000192995 ⟹ ENSMUSP00000141566

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38.p6 Ensembl	9	108,392,805 - 108,410,934 (+)	Ensembl

RefSeq Acc Id:

NM_053216 ⟹ NP_444446

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	9	108,270,033 - 108,274,969 (+)	NCBI
GRCm38	9	108,392,834 - 108,397,770 (+)	NCBI
MGSCv37	9	108,295,165 - 108,300,101 (+)	RGD
Celera	9	108,002,041 - 108,006,978 (+)	RGD
cM Map	9		ENTREZGENE

Sequence:

show sequence

GGGCACTCTTGTGCGGCAACGGCTGGGGAAATGTCTGAAAAACTACGAAGATGCAGAAAGGAGC
TGACTGCTGCTATAGACCGAGCCTTTGAAGGAGTCAGGCATTCTCAGGAGTGCACAGCCCAGCA
GAGGCTGGACGCCCCGTCGCTCACCTCCCAGCCGGTACACAGGCTCCTCTGCAGAAACCCACTG
GCTGCCTGCCCCTCTGCTGCCCCATACTCTGGTGCCTCGTGTGCTCCTGAGAGTGAGAACCCGG
CCTTCGGGACACACCATATTCCGGTTAATTCAAAACTTCAGCAGCCTCTATACCCCAAAAGGAA
ACCTCTGACCAGCAAGGAAAATGTCTTGATGCAGTCTTCCATTTTGGCACGTGACAGACAGTTT
TGGAGAGCTGCAGGTGATGGGGAAGACTGGAGAAAAGATAGTTTAAGGAAGGATATGGAGAGAG
ATTTAAAAGCTGACCCAAATGTACTGCTCAGCAGTTCTAGCCAAGAGGTCACAAAGGATCTGCT
AGACATGATTGACCATACAAGTATCCGAACTATTGAAGAATTGGCTGGAAAACTAGAATTTGAA
AATGAATTGAACCGTGTGTGTGGACACTGCCAAGATTCACCCTTCAAGGAGGAAGCCTGGGCCC
TGCTTGTGGATGAGAGTCCTCAGAAGGCTCTGGATGCTGACCCTGGTAGCCTCAAGCAGGCTTT
GGATGATCAGAATATAGTTGAGACTGTTCTGGACTTGGAAGAAGACTACAACTTGATGACTTCT
TTTAAATACCAAATAGAGTGAGGAGAGTGGATGTCAGCAGCCACAGTGGTTACCAGAACAAGTC
TTCACGAGGGGTTGGCAGAGCCCAAATTGCCACACCTTGTTTAATTTCTGCTGAATCCCATTTT
GAGCTGAGAGCCCAGGTTTTAGTTCTGTTATTTTGAAATGTTTGAAAAGTTTTTTTTGGACTTG
ACATTTTTTTTAAAGTGTATTCTTGGTTAGTGTTGAATATATACAGTCCCCAGGATAGGTTATA
GGTTGTGCCTCTGCTCTTTGTCCTTGTATTCTTTTATATGAATCCCTGGAAAAATAAAAATCCA
GGAACCATAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006511628 ⟹ XP_006511691

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	9	108,270,023 - 108,275,416 (+)	NCBI
GRCm38	9	108,392,824 - 108,398,217 (+)	NCBI

Sequence:

show sequence

AGTGACCGTTGGGCACTCTTGTGCGGCAACGGCTGGGTGAGGACTCAACGGGGCCCCGTCCTGT
CTAGGCTGGCCATAGTTTGGGGGCCCAGACAGCAACTGGGCGCAGTAGTGGGTGGAGGGAAAAG
GCTTAGCGGCCTACAGGCTAAGGAAGCTCTGGGCGGTGAGGCGGGGCGTCTCGGGCCCTCCCCC
GTGACCCTGGGTCCTCTGAGAATCCCGTGACCCTGGGTCCTCTGAGAATGGCGGGTGATCCGCC
CCTCCGAGGAAAAGAACGAAGGATGATGTTGTATAACCGTAGGTCATACTCGAAATCGAGGTTG
AATCCCAGCCTCCTGTATAGAAGCATCATTTTCCCGTTGCTCCGTGCATTTACAATTATCACTT
AATAAAAGAAAGCATGGTCGCTTTTAGGGAAATGTCTGAAAAACTACGAAGATGCAGAAAGGAG
CTGACTGCTGCTATAGACCGAGCCTTTGAAGGAGTCAGGCATTCTCAGGAGTGCACAGCCCAGC
AGAGGCTGGACGCCCCGTCGCTCACCTCCCAGCCGGTACACAGGCTCCTCTGCAGAAACCCACT
GGCTGCCTGCCCCTCTGCTGCCCCATACTCTGGTGCCTCGTGTGCTCCTGAGAGTGAGAACCCG
GCCTTCGGGACACACCATATTCCGGTTAATTCAAAACTTCAGCAGCCTCTATACCCCAAAAGGA
AACCTCTGACCAGCAAGGAAAATGTCTTGATGCAGTCTTCCATTTTGGCACGTGACAGACAGTT
TTGGAGAGCTGCAGGTGATGGGGAAGACTGGAGAAAAGATAGTTTAAGGAAGGATATGGAGAGA
GATTTAAAAGCTGACCCAAATGTACTGCTCAGCAGTTCTAGCCAAGAGGTCACAAAGGATCTGC
TAGACATGATTGACCATACAAGTATCCGAACTATTGAAGAATTGGCTGGAAAACTAGAATTTGA
AAATGAATTGAACCGTGTGTGTGGACACTGCCAAGATTCACCCTTCAAGGAGGAAGCCTGGGCC
CTGCTTGTGGATGAGAGTCCTCAGAAGGCTCTGGATGCTGACCCTGGTAGCCTCAAGCAGGCTT
TGGATGATCAGAATATAGTTGAGACTGTTCTGGACTTGGAAGAAGACTACAACTTGATGACTTC
TTTTAAATACCAAATAGAGTGAGGAGAGTGGATGTCAGCAGCCACAGTGGTTACCAGAACAAGT
CTTCACGAGGGGTTGGCAGAGCCCAAATTGCCACACCTTGTTTAATTTCTGCTGAATCCCATTT
TGAGCTGAGAGCCCAGGTTTTAGTTCTGTTATTTTGAAATGTTTGAAAAGTTTTTTTTGGACTT
GACATTTTTTTTAAAGTGTATTCTTGGTTAGTGTTGAATATATACAGTCCCCAGGATAGGTTAT
AGGTTGTGCCTCTGCTCTTTGTCCTTGTATTCTTTTATATGAATCCCTGGAAAAATAAAAATCC
AGGAACCATAAAAAGGGTGGGTTTATTACCTGGGGCTAGCCCATCACAGGTAAGCTCCTCTCAG
AAGAGCCAGGCTCAGGCAGAAGTTTGACTTGGGCCCTCTCCTGCCTGTGTACTCTATTCTCCTC
ACACAGTGCACACACTGCACACAGGGACCCAGTCCCATGTTTTCCTCAAGTCCCTAGCCCTACC
CTACACAGAGCAATGCCTCTGTCCAGGTCTGCTGCAATCAGTTTCTGGTAGGATCCCAGGCTGC
CTTCTTTAGGATATCCCATGAGGCCCCTTACCTAATCAATCCTCCACAGCTATGTGGACCCTGC
TGAGGGCAGGCAGGGGAAGGTAAGCAAAGGTTTACCTGTCCACCTTCACACCTGACCACTTCAG
CCCACCATGAGTAGTTTTATAGCACTTAGCTGAGCCAAGACGGTGTGGAGAACCAGGCCATTGC
CCCAAGGTTAGCA

hide sequence

Protein Sequences


Protein RefSeqs	NP_444446	(Get FASTA)	NCBI Sequence Viewer
	XP_006511691	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH61048	(Get FASTA)	NCBI Sequence Viewer
	BAB24864	(Get FASTA)	NCBI Sequence Viewer
	EDL21283	(Get FASTA)	NCBI Sequence Viewer
	Q9D9C7	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:

NP_444446 ⟸ NM_053216

- UniProtKB:

Q9D9C7 (UniProtKB/Swiss-Prot), A0A0R4J0D7 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MSEKLRRCRKELTAAIDRAFEGVRHSQECTAQQRLDAPSLTSQPVHRLLCRNPLAACPSAAPYS
GASCAPESENPAFGTHHIPVNSKLQQPLYPKRKPLTSKENVLMQSSILARDRQFWRAAGDGEDW
RKDSLRKDMERDLKADPNVLLSSSSQEVTKDLLDMIDHTSIRTIEELAGKLEFENELNRVCGHC
QDSPFKEEAWALLVDESPQKALDADPGSLKQALDDQNIVETVLDLEEDYNLMTSFKYQIE

hide sequence

RefSeq Acc Id:

XP_006511691 ⟸ XM_006511628

- Peptide Label:

isoform X1

- Sequence:

show sequence

MVAFREMSEKLRRCRKELTAAIDRAFEGVRHSQECTAQQRLDAPSLTSQPVHRLLCRNPLAACP
SAAPYSGASCAPESENPAFGTHHIPVNSKLQQPLYPKRKPLTSKENVLMQSSILARDRQFWRAA
GDGEDWRKDSLRKDMERDLKADPNVLLSSSSQEVTKDLLDMIDHTSIRTIEELAGKLEFENELN
RVCGHCQDSPFKEEAWALLVDESPQKALDADPGSLKQALDDQNIVETVLDLEEDYNLMTSFKYQ
IE

hide sequence

RefSeq Acc Id:

ENSMUSP00000035234 ⟸ ENSMUST00000035234

RefSeq Acc Id:

ENSMUSP00000141566 ⟸ ENSMUST00000192995

Promoters

RGD ID:

6843936

Promoter ID:

MM_KWN:58790

Type:

CpG-Island

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

3T3L1_Day4, BoneMarrow_2Hour, BoneMarrow_4Hour, Brain, ES_Cell, Kidney, Lung

Transcripts:

NM_053216

Position:

Mouse Assembly	Chr	Position (strand)	Source
MGSCv36	9	108,294,676 - 108,295,602 (+)	MPROMDB

RGD ID:

8670886

Promoter ID:

EPDNEW_M13474

Type:

multiple initiation site

Name:

1700102P08Rik_1

Description:

Mus musculus RIKEN cDNA 1700102P08 gene , mRNA.

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	9	108,392,834 - 108,392,894	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	MGI:2148248	AgrOrtholog
Ensembl Genes	ENSMUSG00000032611	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein	ENSMUSP00000035234	ENTREZGENE, UniProtKB/TrEMBL
	ENSMUSP00000141566	UniProtKB/TrEMBL
Ensembl Transcript	ENSMUST00000035234	ENTREZGENE, UniProtKB/TrEMBL
	ENSMUST00000192995	UniProtKB/TrEMBL
InterPro	DUF4712	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	mmu:112418	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD	MGI:2148248	ENTREZGENE
NCBI Gene	112418	ENTREZGENE
PANTHER	PTHR36680	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	DUF4712	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	1700102P08Rik	PhenoGen
UniGene	Mm.78287	ENTREZGENE
UniProt	A0A0A6YWI5_MOUSE	UniProtKB/TrEMBL
	A0A0R4J0D7	ENTREZGENE, UniProtKB/TrEMBL
	CC062_MOUSE	UniProtKB/Swiss-Prot, ENTREZGENE
UniProt Secondary	Q6P8V6	UniProtKB/Swiss-Prot

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar