Zfp617 (zinc finger protein 617) - Rat Genome Database
Submit Data |  Help |  Video Tutorials |  News |  Publications |  FTP Download |  REST API |  Citing RGD |  Contact   
Gene: Zfp617 (zinc finger protein 617) Mus musculus
Analyze
Symbol: Zfp617
Name: zinc finger protein 617
RGD ID: 1619039
MGI Page MGI
Description: Predicted to have DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to localize to nucleus. Is expressed in early conceptus; inner cell mass; and oocyte; INTERACTS WITH 1,2-dimethylhydrazine; 4,4'-diaminodiphenylmethane; acetazolamide.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: Zfps11; Zfps11-6; Zinc finger protein s11-6
RGD Orthologs
Rat
Alliance Genes
More Info more info ...
Related Pseudogenes: Gm18163   Gm18180  
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39872,676,669 - 72,688,474 (+)NCBIGRCm39mm39
GRCm38871,922,825 - 71,934,630 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl871,908,635 - 71,934,629 (+)EnsemblGRCm38mm10GRCm38
MGSCv37874,446,724 - 74,458,529 (+)NCBIGRCm37mm9NCBIm37
MGSCv36874,851,853 - 74,862,989 (+)NCBImm8
Celera876,279,284 - 76,291,018 (+)NCBICelera
Cytogenetic Map8B3.3NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleus  (IBA)

References

Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12205107   PMID:12466851   PMID:12477932   PMID:14610273   PMID:15574821   PMID:15618518   PMID:16141072   PMID:16141073  
PMID:16602821   PMID:17131200   PMID:17967808   PMID:18799693   PMID:20412781   PMID:21677750   PMID:21873635  


Genomics

Comparative Map Data
Zfp617
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39872,676,669 - 72,688,474 (+)NCBIGRCm39mm39
GRCm38871,922,825 - 71,934,630 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl871,908,635 - 71,934,629 (+)EnsemblGRCm38mm10GRCm38
MGSCv37874,446,724 - 74,458,529 (+)NCBIGRCm37mm9NCBIm37
MGSCv36874,851,853 - 74,862,989 (+)NCBImm8
Celera876,279,284 - 76,291,018 (+)NCBICelera
Cytogenetic Map8B3.3NCBI
LOC102546572
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.0715,015,985 - 15,038,622 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0715,172,719 - 15,195,081 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera79,941,019 - 9,963,672 (-)NCBICelera
Cytogenetic Map7q11NCBI


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4140967Bmd39_mbone mineral density 39 (mouse)Not determined832016544117238700Mouse
1558875Eae31_mexperimental allergic encephalomyelitis susceptibility 31 (mouse)Not determined834642776114837007Mouse
1301013Capsq4_mcapsaicin sensitivity related QTL 4 (mouse)Not determined83616300092728652Mouse
27226754Femd6_mfemur midshaft diameter 6, 10 week (mouse)837400000109600000Mouse
12904744Carcdq1_mcardiac collagen deposition QTL 1 (mouse)83970925694689598Mouse
1301544Iba3_minduction of brown adipocytes 3 (mouse)Not determined84429488078295025Mouse
1301717Adip4_madiposity 4 (mouse)Not determined84763703081637146Mouse
10766453Char11_mP. chabaudi malaria resistance QTL 11 (mouse)84763703081637146Mouse
1301441Skull11_mskull morphology 11 (mouse)Not determined84773713481737254Mouse
1357715Alaa3_malopecia areata 3 (mouse)Not determined84879293982793021Mouse
14746987Manh64_mmandible shape 64 (mouse)85005330684053306Mouse
14747005Mancz7_mmandible centroid size 7 (mouse)85005330684053306Mouse
14700686Civq3_mcerebral infarct volume QTL 3 (mouse)85188219185882191Mouse
1301506Aevm1_mautoimmune extremity vasculitis in MRL mice 1 (mouse)Not determined85428781788287993Mouse
1301952Im3_mimmunoregulatory 3 (mouse)Not determined85470661488706763Mouse
10412287Carg3_mCandida albicans resistance gene 3 (mouse)Not determined85554502889545028Mouse
11353828Gf7_mgonadal fat pad weight 7 (mouse)85820147992201479Mouse
10043975Obq31_mobesity QTL 31 (mouse)Not determined85840977692409776Mouse
1301688Orch6_mautoimmune orchitis resistance 6 (mouse)Not determined86078685094786976Mouse
4141285Tgq18_mtriglyceride QTL 18 (mouse)Not determined6346010797460107Mouse
4141797Skmw16_mskeletal muscle weight 16 (mouse)Not determined86393954797939696Mouse
1357787Vtbt5_mvertebral trabecular bone trait 5 (mouse)Not determined86535776899357920Mouse
10043992Hbnr11_mHeligmosomoides bakeri nematode resistance 11 (mouse)Not determined86560020799600347Mouse
10766466Char12_mP. chabaudi malaria resistance QTL 12 (mouse)86826982782600347Mouse
1301767Fcsa2_mfemoral cross-sectional area 2 (mouse)Not determined870305375104305495Mouse
4142283Imraq2_mimmune response to AAV2 QTL 2 (mouse)Not determined870305375104305495Mouse
1558780Idd22_minsulin dependent diabetes susceptibility 22 (mouse)Not determined871102903105103009Mouse
4141395Char2a_mP. chabaudi malaria resistance QTL 2a (mouse)Not determined7113678390202598Mouse
4142023W3q5_mweight 3 weeks QTL 5 (mouse)Not determined71287817123895615Mouse
1357708Orq1_movulation rate QTL 1 (mouse)Not determined871287817123895615Mouse
1301872Cd4ts3_mCD4 T cell subset 3 (mouse)Not determined871396181105396393Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:342
Count of miRNA genes:275
Interacting mature miRNAs:289
Transcripts:ENSMUST00000119003, ENSMUST00000131544
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000119003   ⟹   ENSMUSP00000112926
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl871,922,852 - 71,934,629 (+)Ensembl
RefSeq Acc Id: ENSMUST00000131544   ⟹   ENSMUSP00000120213
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl871,908,635 - 71,932,495 (+)Ensembl
RefSeq Acc Id: NM_133358   ⟹   NP_579936
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39872,676,669 - 72,688,474 (+)NCBI
GRCm38871,922,825 - 71,934,630 (+)ENTREZGENE
MGSCv37874,446,724 - 74,458,529 (+)RGD
Celera876,279,284 - 76,291,018 (+)RGD
cM Map8 ENTREZGENE
Sequence:
Protein Sequences
Protein RefSeqs NP_579936 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH14712 (Get FASTA)   NCBI Sequence Viewer  
  BAA34724 (Get FASTA)   NCBI Sequence Viewer  
  BAE25579 (Get FASTA)   NCBI Sequence Viewer  
  EDL10772 (Get FASTA)   NCBI Sequence Viewer  
  EDL10773 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_579936   ⟸   NM_133358
- UniProtKB: Q91WM0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000112926   ⟸   ENSMUST00000119003
RefSeq Acc Id: ENSMUSP00000120213   ⟸   ENSMUST00000131544
Protein Domains
C2H2-type   KRAB

Promoters
RGD ID:8667445
Promoter ID:EPDNEW_M11753
Type:initiation region
Name:Zfp617_1
Description:Mus musculus zinc finger protein 617 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38871,922,862 - 71,922,922EPDNEW
RGD ID:6843701
Promoter ID:MM_KWN:54837
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:NM_133358,   UC009MFA.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36874,446,491 - 74,447,132 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2684459 AgrOrtholog
Ensembl Genes ENSMUSG00000066880 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000112926 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSP00000120213 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000119003 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUST00000131544 UniProtKB/TrEMBL
InterPro KRAB_dom_sf UniProtKB/TrEMBL
  Krueppel-associated_box UniProtKB/TrEMBL
  Znf_C2H2/integrase_DNA-bd UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/TrEMBL
KEGG Report mmu:170938 UniProtKB/TrEMBL
MGD MGI:2684459 ENTREZGENE
NCBI Gene 170938 ENTREZGENE
Pfam KRAB UniProtKB/TrEMBL
  zf-C2H2 UniProtKB/TrEMBL
PhenoGen Zfp617 PhenoGen
PROSITE KRAB UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
SMART KRAB UniProtKB/TrEMBL
  ZnF_C2H2 UniProtKB/TrEMBL
Superfamily-SCOP Krueppel-associated_box UniProtKB/TrEMBL
  SSF57667 UniProtKB/TrEMBL
UniProt D3Z0X4_MOUSE UniProtKB/TrEMBL
  Q3UP18_MOUSE UniProtKB/TrEMBL
  Q91WM0 ENTREZGENE, UniProtKB/TrEMBL
  Q9Z2X6_MOUSE UniProtKB/TrEMBL