Tet3 (tet methylcytosine dioxygenase 3) - Rat Genome Database

Send us a Message



 Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) RatMine GViewer (Genome Viewer) Overgo Probe Designer ACP Haplotyper VCMap
Aging & Age-Related Disease Cancer Cardiovascular Disease COVID-19 Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models PhenoMiner (Quantitative Phenotypes) Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes GERRC (Gene Editing Rat Resource Center) Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Poster Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: Tet3 (tet methylcytosine dioxygenase 3) Mus musculus
Analyze
Symbol: Tet3
Name: tet methylcytosine dioxygenase 3
RGD ID: 1619031
MGI Page MGI
Description: Enables methylcytosine dioxygenase activity. Involved in DNA demethylation of male pronucleus. Acts upstream of or within DNA demethylation. Located in cytoplasm; female pronucleus; and male pronucleus. Is expressed in several structures, including central nervous system; early conceptus; future brain; and genitourinary system. Orthologous to human TET3 (tet methylcytosine dioxygenase 3); PARTICIPATES IN DNA modification pathway; INTERACTS WITH 1,2-dimethylhydrazine; 2,3',4,4',5-Pentachlorobiphenyl; 3,4-methylenedioxymethamphetamine.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: B430006D22Rik; BC037432; D230004J03Rik; methylcytosine dioxygenase TET3; probable methylcytosine dioxygenase TET3; RIKEN cDNA B430006D22 gene; Tet methylcytosine deoxygenase 3 isoform; tet oncogene family member 3
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39683,339,355 - 83,434,190 (-)NCBIGRCm39mm39
GRCm39 Ensembl683,339,355 - 83,436,066 (-)Ensembl
GRCm38683,362,373 - 83,457,208 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl683,362,373 - 83,459,084 (-)EnsemblGRCm38mm10GRCm38
MGSCv37683,312,367 - 83,391,672 (-)NCBIGRCm37mm9NCBIm37
MGSCv36683,328,031 - 83,424,742 (-)NCBImm8
Celera685,343,470 - 85,422,764 (-)NCBICelera
Cytogenetic Map6C3NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

Additional References at PubMed
PMID:10349636   PMID:10922068   PMID:11042159   PMID:11044607   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:12693553   PMID:15033168   PMID:16141072   PMID:16141073  
PMID:19372391   PMID:20639862   PMID:21267068   PMID:21321204   PMID:21407207   PMID:21778364   PMID:21873635   PMID:21892189   PMID:22445327   PMID:22569552   PMID:22722204   PMID:23028748  
PMID:23151479   PMID:23217707   PMID:23353889   PMID:23548903   PMID:23643243   PMID:23690950   PMID:23920106   PMID:23969834   PMID:23998935   PMID:24194590   PMID:24279473   PMID:24304661  
PMID:24357321   PMID:24480825   PMID:24757058   PMID:24838624   PMID:25280220   PMID:25344561   PMID:25497087   PMID:25557551   PMID:25608811   PMID:25640176   PMID:25843715   PMID:25915473  
PMID:25982203   PMID:26086966   PMID:26199412   PMID:26507142   PMID:26576615   PMID:26607761   PMID:26711116   PMID:26751286   PMID:26774490   PMID:26902115   PMID:26903244   PMID:26989192  
PMID:27091986   PMID:27184841   PMID:27425624   PMID:27627619   PMID:27760115   PMID:27869616   PMID:27869820   PMID:27880907   PMID:27930333   PMID:28276837   PMID:28325772   PMID:28504700  
PMID:28614801   PMID:28930672   PMID:29048538   PMID:29108636   PMID:29158485   PMID:29374200   PMID:29795194   PMID:30575719   PMID:30726915   PMID:30979904   PMID:31028100   PMID:31043609  
PMID:31088968   PMID:31120187   PMID:31361780   PMID:31371502   PMID:31467060   PMID:31541101   PMID:31646359   PMID:31807777   PMID:31953394   PMID:32103150   PMID:32325033   PMID:32380888  
PMID:32405722   PMID:32572241   PMID:32677323   PMID:32892421   PMID:33634103   PMID:34215750   PMID:34429415  


Genomics

Comparative Map Data
Tet3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39683,339,355 - 83,434,190 (-)NCBIGRCm39mm39
GRCm39 Ensembl683,339,355 - 83,436,066 (-)Ensembl
GRCm38683,362,373 - 83,457,208 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl683,362,373 - 83,459,084 (-)EnsemblGRCm38mm10GRCm38
MGSCv37683,312,367 - 83,391,672 (-)NCBIGRCm37mm9NCBIm37
MGSCv36683,328,031 - 83,424,742 (-)NCBImm8
Celera685,343,470 - 85,422,764 (-)NCBICelera
Cytogenetic Map6C3NCBI
TET3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl273,984,910 - 74,108,176 (+)EnsemblGRCh38hg38GRCh38
GRCh38273,982,036 - 74,135,394 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh37274,212,037 - 74,335,303 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36274,126,958 - 74,188,811 (+)NCBINCBI36hg18NCBI36
Celera274,104,908 - 74,166,519 (+)NCBI
Cytogenetic Map2p13.1NCBI
HuRef274,009,368 - 74,071,589 (+)NCBIHuRef
CHM1_1274,202,763 - 74,264,628 (+)NCBICHM1_1
Tet3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.24115,867,412 - 115,964,433 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl4115,871,265 - 115,964,193 (-)Ensembl
Rnor_6.04115,060,702 - 115,160,800 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4115,066,309 - 115,157,263 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04179,650,812 - 179,747,154 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44117,582,351 - 117,659,282 (-)NCBIRGSC3.4rn4RGSC3.4
Celera4104,861,292 - 104,961,373 (-)NCBICelera
Cytogenetic Map4q34NCBI
Tet3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542411,617,993 - 11,714,203 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542411,612,124 - 11,722,130 (-)NCBIChiLan1.0ChiLan1.0
TET3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.12A75,568,636 - 75,688,698 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A75,568,636 - 75,682,701 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v02A74,058,948 - 74,180,046 (+)NCBIMhudiblu_PPA_v0panPan3
TET3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11748,976,510 - 49,083,454 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1748,981,558 - 49,082,675 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1748,617,212 - 48,723,766 (-)NCBI
ROS_Cfam_1.01749,835,903 - 49,942,545 (-)NCBI
UMICH_Zoey_3.11748,851,775 - 48,958,566 (-)NCBI
UNSW_CanFamBas_1.01748,923,668 - 49,025,715 (-)NCBI
UU_Cfam_GSD_1.01749,477,148 - 49,583,958 (-)NCBI
Tet3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629210,346,237 - 10,447,001 (-)NCBI
SpeTri2.0NW_004936556292,551 - 391,644 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TET3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl368,918,933 - 69,020,986 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1368,918,896 - 69,020,406 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2372,074,722 - 72,176,883 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TET3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11433,170,046 - 33,293,128 (-)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl1433,176,039 - 33,293,906 (-)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604578,871,684 - 78,997,138 (+)NCBIVero_WHO_p1.0
Tet3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462474929,371,674 - 29,494,785 (-)NCBIHetGla_female_1.0hetGla2

Position Markers
Tet3  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map6C3UniSTS
cM Map635.94UniSTS
D6UmiJ15  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38683,428,540 - 83,428,654UniSTSGRCm38
MGSCv37683,378,534 - 83,378,648UniSTSGRCm37
Celera685,409,615 - 85,409,729UniSTS
Cytogenetic Map6C3UniSTS
cM Map634.8UniSTS
D6UmiJ2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38683,457,688 - 83,457,846UniSTSGRCm38
MGSCv37683,407,682 - 83,407,840UniSTSGRCm37
Celera685,438,774 - 85,438,932UniSTS
Cytogenetic Map6C3UniSTS
cM Map634.81UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
25440480Moaq2_mmodifier of alien QTL 2 (mouse)61117500000Mouse
26884414Bzwq12_mbi-zygomatic width QTL 12, 16 week (mouse)63400000139100000Mouse
1300556Cia6_mcollagen induced arthritis QTL 6 (mouse)Not determined6446488487426034Mouse
4142126W3q3_mweight 3 weeks QTL 3 (mouse)Not determined450382396656149Mouse
4142361W10q11_mweight 10 weeks QTL 11 (mouse)Not determined450382396656149Mouse
4142271Egq8_mearly growth QTL 8 (mouse)Not determined450382396656149Mouse
4142232W6q4_mweight 6 weeks QTL 4 (mouse)Not determined450382396656149Mouse
1558984Cplaq9_mcircadian period of locomotor activity 9 (mouse)Not determined63866962592607450Mouse
1300618Pgia19_mproteoglycan induced arthritis 19 (mouse)Not determined64531405987426034Mouse
10412157Fl1n_mfatty liver 1 in NSY (mouse)Not determined645314059128835032Mouse
4142259Tabw2_mtally ho associated body weight 2 (mouse)Not determined46935985136423692Mouse
25314319Histh6_mhistamine hypersensitivity 6 (mouse)648720000125360000Mouse
25314320Histh5_mhistamine hypersensitivity 5 (mouse)648720000148450000Mouse
1301962Eila2_methanol induced locomotor activity 2 (mouse)Not determined648726556125356785Mouse
1301254Skts11_mskin tumor susceptibility 11 (mouse)Not determined65117915085179300Mouse
1357683Igf1sl1_mIGF-1 serum levels 1 (mouse)Not determined652161713116155267Mouse
4141028Mclr_mmethylcholanthrene lymphoma resistance (mouse)Not determined5437342788379171Mouse
15039373Adip28_madiposity 28 (mouse)65630821190308211Mouse
15039375Bw41_mbody weight QTL 41 (mouse)65630821190308211Mouse
1558977Skmw10_mskeletal muscle weight 10 (mouse)Not determined65844758392447710Mouse
10043972Obq28_mobesity QTL 28 (mouse)Not determined65854043392540433Mouse
1301740Bwq2_mbody weight QTL 2 (mouse)Not determined66005768094057799Mouse
1301369Im4_mimmunoregulatory 4 (mouse)Not determined66348473897484905Mouse
1300650Bw18_mbody weight QTL 18 (mouse)Not determined666713869100714031Mouse
1301876Bits2_mbitterness sensitivity 2 (mouse)Not determined670425898104426034Mouse
1301813Skl3_mskeletal size (tail length) 3 (mouse)Not determined670425898104426034Mouse
1301034Egrm2_mearly growth rate (mouse)Not determined670425898104426034Mouse
4141990Etax6_methanol induced ataxia 6 (mouse)Not determined7132262186275719Mouse
1302020Bbaa20_mB.burgdorferi-associated arthritis 20 (mouse)Not determined67132262193464093Mouse
1300869Stheal5_msoft tissue heal 5 (mouse)Not determined671575060105575178Mouse
1300954Fcsa1_mfemoral cross-sectional area 1 (mouse)Not determined671981024105981170Mouse
1301521Pas1c_mpulmonary adenoma susceptibility 1c (mouse)Not determined671981024105981170Mouse
13506930Recrq9_mrecombination rate in male meiosis QTL 9 (mouse)673500000134700000Mouse
1301320Ots1_movarian teratoma susceptibility 1 (mouse)Not determined675447583104503555Mouse
1301571Arrd1_mage-related retinal degeneration 1 (mouse)Not determined67554435692607450Mouse
1300674Nidd3n_mnon-insulin-dependent diabetes mellitus 3 in NSY (mouse)Not determined67554435694225955Mouse
10412195Efw_mepididymal fat weight (mouse)Not determined67554435694225955Mouse
10043901Pfat5_mpredicted fat percentage 5 (mouse)Not determined675607306109607450Mouse
10412208Cypr4_mcytokine production 4 (mouse)Not determined675716503109716697Mouse
1357875Pfat2_mpredicted fat percentage 2 (mouse)Not determined676463949110464093Mouse
14697704Stsl4_mSalmonella typhimurium susceptibility locus 4 (mouse)67710000090000000Mouse
13824985Alh1_mamplitude of lateral head displacement 1 (mouse)67800000097000000Mouse
4141376Dbm1_mdiabetes modifier 1 (mouse)Not determined678629504121115387Mouse
14696731Pairq1_mP. aeruginosa infection resistance QTL 1 (mouse)681500000102200000Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1842
Count of miRNA genes:797
Interacting mature miRNAs:1036
Transcripts:ENSMUST00000056191, ENSMUST00000089622
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001347313 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_183138 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006505775 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006505776 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006505777 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC090648 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC159713 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK044758 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK046543 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK046552 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK046553 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK083576 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK084164 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK122274 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK136250 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC096437 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HQ423151 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HQ423152 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JX946278 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000056191
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl683,375,421 - 83,418,660 (-)Ensembl
GRCm38.p6 Ensembl683,398,439 - 83,441,678 (-)Ensembl
RefSeq Acc Id: ENSMUST00000089622   ⟹   ENSMUSP00000087049
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl683,339,355 - 83,418,657 (-)Ensembl
GRCm38.p6 Ensembl683,362,373 - 83,441,675 (-)Ensembl
RefSeq Acc Id: ENSMUST00000186548   ⟹   ENSMUSP00000139630
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl683,345,024 - 83,433,374 (-)Ensembl
GRCm38.p6 Ensembl683,368,042 - 83,456,392 (-)Ensembl
RefSeq Acc Id: ENSMUST00000190295   ⟹   ENSMUSP00000139679
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl683,381,473 - 83,436,066 (-)Ensembl
GRCm38.p6 Ensembl683,404,491 - 83,459,084 (-)Ensembl
RefSeq Acc Id: ENSMUST00000205921
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl683,413,779 - 83,418,614 (-)Ensembl
GRCm38.p6 Ensembl683,436,797 - 83,441,632 (-)Ensembl
RefSeq Acc Id: NM_001347313   ⟹   NP_001334242
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39683,339,355 - 83,433,374 (-)NCBI
GRCm38683,362,373 - 83,456,392 (-)NCBI
Sequence:
RefSeq Acc Id: NM_183138   ⟹   NP_898961
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39683,339,355 - 83,418,660 (-)NCBI
GRCm38683,362,373 - 83,441,678 (-)NCBI
MGSCv37683,312,367 - 83,391,672 (-)RGD
Celera685,343,470 - 85,422,764 (-)RGD
cM Map6 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006505775   ⟹   XP_006505838
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39683,339,355 - 83,433,849 (-)NCBI
GRCm38683,362,373 - 83,456,867 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006505776   ⟹   XP_006505839
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39683,339,355 - 83,434,190 (-)NCBI
GRCm38683,362,373 - 83,457,208 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006505777   ⟹   XP_006505840
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39683,339,355 - 83,433,449 (-)NCBI
GRCm38683,362,373 - 83,456,467 (-)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: NP_898961   ⟸   NM_183138
- Peptide Label: isoform 2
- UniProtKB: Q8BG87 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006505839   ⟸   XM_006505776
- Peptide Label: isoform X1
- UniProtKB: Q8BG87 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006505838   ⟸   XM_006505775
- Peptide Label: isoform X1
- UniProtKB: Q8BG87 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006505840   ⟸   XM_006505777
- Peptide Label: isoform X2
- UniProtKB: K9JH93 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001334242   ⟸   NM_001347313
- Peptide Label: isoform 1
- UniProtKB: Q8BG87 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: ENSMUSP00000139630   ⟸   ENSMUST00000186548
RefSeq Acc Id: ENSMUSP00000139679   ⟸   ENSMUST00000190295
RefSeq Acc Id: ENSMUSP00000087049   ⟸   ENSMUST00000089622
Protein Domains
Tet_JBP

Promoters
RGD ID:6839156
Promoter ID:MM_KWN:46609
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day4,   BoneMarrow_0Hour,   BoneMarrow_4Hour,   Brain,   Kidney,   Liver,   Lung,   Spleen
Transcripts:AK122274_TET3,   UC009CNI.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36683,313,011 - 83,319,567 (-)MPROMDB
RGD ID:6838999
Promoter ID:MM_KWN:46610
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   Brain,   Lung
Transcripts:ENSMUST00000051321,   UC009CNJ.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36683,329,631 - 83,330,957 (-)MPROMDB
RGD ID:6839153
Promoter ID:MM_KWN:46611
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   Brain,   Kidney,   Liver,   Lung,   Spleen
Transcripts:UC009CNK.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36683,354,011 - 83,355,817 (-)MPROMDB
RGD ID:6839009
Promoter ID:MM_KWN:46613
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000056191,   NM_183138,   NR_028382,   UC009CNM.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36683,390,596 - 83,392,587 (+)MPROMDB
RGD ID:6890162
Promoter ID:EPDNEW_M8532
Type:initiation region
Name:Tet3_1
Description:Mus musculus tet methylcytosine dioxygenase 3 , transcript variant2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M8533  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38683,441,630 - 83,441,690EPDNEW
RGD ID:6890214
Promoter ID:EPDNEW_M8533
Type:initiation region
Name:Tet3_2
Description:Mus musculus tet methylcytosine dioxygenase 3 , transcript variant2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M8532  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38683,456,440 - 83,456,500EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2446229 AgrOrtholog
Ensembl Genes ENSMUSG00000034832 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000087049 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSP00000139630 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000139679 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000089622 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUST00000186548 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000190295 UniProtKB/TrEMBL
InterPro 2OGFeDO_noxygenase_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TET1/2/3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_CXXC UniProtKB/Swiss-Prot
KEGG Report mmu:194388 UniProtKB/Swiss-Prot
MGD MGI:2446229 ENTREZGENE
NCBI Gene 194388 ENTREZGENE
PANTHER PTHR23358 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Tet_JBP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Tet3 PhenoGen
PROSITE ZF_CXXC UniProtKB/Swiss-Prot
SMART Tet_JBP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A087WP90_MOUSE UniProtKB/TrEMBL
  A0A5K1VVP6_MOUSE UniProtKB/TrEMBL
  K9JH93 ENTREZGENE
  Q80U11_MOUSE UniProtKB/TrEMBL
  Q8BG87 ENTREZGENE
  Q8BNB2_MOUSE UniProtKB/TrEMBL
  TET3_MOUSE UniProtKB/Swiss-Prot
UniProt Secondary K9JH93 UniProtKB/Swiss-Prot
  L0HN04 UniProtKB/Swiss-Prot
  Q4VAD3 UniProtKB/Swiss-Prot
  Q8C8N8 UniProtKB/Swiss-Prot
  Q8CI60 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-03-31 Tet3  tet methylcytosine dioxygenase 3  B430006D22Rik  RIKEN cDNA B430006D22 gene  Data Merged 737654 PROVISIONAL
2012-02-14 Tet3  tet methylcytosine dioxygenase 3  Tet3  tet oncogene family member 3  Symbol and/or name change 5135510 APPROVED