Or2y1 (olfactory receptor family 2 subfamily Y member 1) - Rat Genome Database

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Gene: Or2y1 (olfactory receptor family 2 subfamily Y member 1) Mus musculus
Analyze
Symbol: Or2y1
Name: olfactory receptor family 2 subfamily Y member 1
RGD ID: 1618909
MGI Page MGI
Description: Predicted to enable olfactory receptor activity. Predicted to be involved in detection of chemical stimulus involved in sensory perception of smell. Predicted to act upstream of or within G protein-coupled receptor signaling pathway and sensory perception of smell. Predicted to be located in membrane. Predicted to be active in plasma membrane. Orthologous to human OR2Y1 (olfactory receptor family 2 subfamily Y member 1).
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: GA_x6K02T2QP88-5941817-5940888; MOR256-; MOR256-41P; MOR256-42P; olfactory receptor 1385; olfactory receptor 1549, pseudogene 1; olfactory receptor MOR256-41P; olfactory receptor MOR256-42P; Olfr1385; Olfr1549-ps1
RGD Orthologs
Human
Rat
Bonobo
Dog
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391149,385,362 - 49,386,291 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1149,379,897 - 49,388,323 (+)EnsemblGRCm39 Ensembl
GRCm381149,494,535 - 49,495,464 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1149,489,070 - 49,497,496 (+)EnsemblGRCm38mm10GRCm38
MGSCv371149,308,037 - 49,308,966 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361149,337,958 - 49,338,887 (+)NCBIMGSCv36mm8
Celera1154,055,371 - 54,056,300 (+)NCBICelera
Cytogenetic Map11B1.2NCBI
cM Map1129.56NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:11802173   PMID:11875048   PMID:14611657   PMID:21873635   PMID:32295537  


Genomics

Comparative Map Data
Or2y1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391149,385,362 - 49,386,291 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1149,379,897 - 49,388,323 (+)EnsemblGRCm39 Ensembl
GRCm381149,494,535 - 49,495,464 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1149,489,070 - 49,497,496 (+)EnsemblGRCm38mm10GRCm38
MGSCv371149,308,037 - 49,308,966 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361149,337,958 - 49,338,887 (+)NCBIMGSCv36mm8
Celera1154,055,371 - 54,056,300 (+)NCBICelera
Cytogenetic Map11B1.2NCBI
cM Map1129.56NCBI
OR2Y1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385180,739,123 - 180,740,058 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5180,739,123 - 180,740,058 (-)EnsemblGRCh38hg38GRCh38
GRCh375180,166,123 - 180,167,058 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 365180,098,729 - 180,099,664 (-)NCBINCBI36Build 36hg18NCBI36
Celera5175,790,024 - 175,790,959 (-)NCBICelera
Cytogenetic Map5q35.3NCBI
HuRef5174,891,305 - 174,892,240 (-)NCBIHuRef
CHM1_15179,598,526 - 179,599,461 (-)NCBICHM1_1
T2T-CHM13v2.05181,295,726 - 181,296,661 (-)NCBIT2T-CHM13v2.0
Or2y1i
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81034,238,313 - 34,239,242 (+)NCBIGRCr8
mRatBN7.21033,737,199 - 33,738,128 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1033,732,012 - 33,738,729 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1038,414,904 - 38,415,833 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0106,953,308 - 6,954,237 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01033,408,559 - 33,409,488 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01034,692,870 - 34,693,799 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1034,692,870 - 34,693,799 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01034,465,828 - 34,466,757 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41034,886,623 - 34,887,552 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11034,887,671 - 34,888,601 (+)NCBI
Celera1033,108,376 - 33,109,305 (+)NCBICelera
Cytogenetic Map10q21NCBI
LOC100991996
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24175,748,137 - 175,749,474 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15173,912,218 - 173,913,555 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05175,926,953 - 175,928,156 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15183,241,959 - 183,243,004 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5183,242,034 - 183,242,969 (-)Ensemblpanpan1.1panPan2
OR2AI2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.111975,672 - 976,647 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl11975,715 - 976,647 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha111,035,683 - 1,036,615 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.011944,668 - 1,012,358 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.111897,810 - 898,742 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.011995,810 - 996,742 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0111,235,757 - 1,236,689 (-)NCBIUU_Cfam_GSD_1.0
LOC106508549
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1257,955,098 - 57,956,725 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.22159,787,991 - 159,790,634 (-)NCBISscrofa10.2Sscrofa10.2susScr3
LOC103245127
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12382,427,104 - 82,430,217 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366607513,851,323 - 13,852,373 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0

Variants

.
Variants in Or2y1
72 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:134
Count of miRNA genes:121
Interacting mature miRNAs:122
Transcripts:ENSMUST00000071807
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
27226798Scvln18_msacral vertebrae length 2, 16 week (mouse)11325000060690826Mouse
26884446Sklq10_mskull length QTL 10, 10 week (mouse)11325000062890826Mouse
26884453Sklq16_mskull length QTL 16, 16 week (mouse)11325000072690826Mouse
13208559Wght10_mweight 10 (mouse)11395000088890826Mouse
13208558Lgth12_mbody length 12 (mouse)11395000094890826Mouse
1300905Scc6_mcolon tumor susceptibility 6 (mouse)Not determined11688027789019734Mouse
27226738Metcl11_mmetatarsal-calcaneal length 11, 10 week (mouse)11885000061390826Mouse
26884401Huml4_mhumerus length 4, 10 week (mouse)111155000068490826Mouse
27226762Feml21_mfemur length 21, 16 week (mouse)111175000065990826Mouse
1357640Orq2_movulation rate QTL 2 (mouse)Not determined111226863768500330Mouse
4141127W3q4_mweight 3 weeks QTL 4 (mouse)Not determined1226863768500330Mouse
4141470Egq4_mearly growth QTL 4 (mouse)Not determined1226863768500330Mouse
4142109W10q2_mweight 10 weeks QTL 2 (mouse)Not determined1226863768500330Mouse
4141582Lgaq1_mlate growth adjusted QTL 1 (mouse)Not determined1226863768500330Mouse
4142308W6q3_mweight 6 weeks QTL 3 (mouse)Not determined111226863768500330Mouse
4142216Lgq1_mlate growth QTL 1 (mouse)Not determined1226863768500330Mouse
4141966Tailq1_mtail length QTL 1 (mouse)Not determined1226863768500330Mouse
1357851Scfq3_msubcutaneous fat pad weight QTL 3 (mouse)Not determined111226863768500330Mouse
1357720Kidpq1_mkidney weight percentage QTL 1 (mouse)Not determined111226863768500330Mouse
1357437Epfq4_mepididymal fat pad weight QTL 4 (mouse)Not determined111226863768500330Mouse
1559002Lmrq4_mLeishmania major resistance QTL 4 (mouse)Not determined111226863769684947Mouse
39128214Lwq20_mliver weight QTL 20 (mouse)1112268637118022724Mouse
1558945Orgwq8_morgan weight QTL 8 (mouse)Not determined111705617567078411Mouse
10053687Eae6_msusceptibility to experimental allergic encephalomyelitis 6 (mouse)Not determined111778196668500330Mouse
12801459Leuf1_mleukocyte filtration 1 (mouse)111857861652578716Mouse
12801460Intim2_mintima modifier 2 (mouse)111857861652578716Mouse
12801457Intmrm2_mintima/media ratio modifier 2 (mouse)111857861652578716Mouse
1300938Bulb3_mbulb size 3 (mouse)Not determined111857861652578716Mouse
4141894Nidd6k_mNidd6 on KK-A (mouse)Not determined1912420496897826Mouse
1300579Thypr1_mthymocyte proliferative response 1 (mouse)Not determined111928257753282715Mouse
14746971Manh70_mmandible shape 70 (mouse)111990589053905890Mouse
4141398Tgq22_mtriglyceride QTL 22 (mouse)Not determined2116340655163406Mouse
10412246Dfs2_mdental fluorosis suseptibility 2 (mouse)Not determined112180736495881231Mouse
10044006Hbnr13_mHeligmosomoides bakeri nematode resistance 13 (mouse)Not determined112577262659772741Mouse
12910801Pwbwq14_mpost-weaning body weight QTL 14 (mouse)112719805750636094Mouse
12910804Pwbwq16_mpost-weaning body weight QTL 16 (mouse)112719805750636094Mouse
12910806Pwbwq15_mpost-weaning body weight QTL 15 (mouse)112719805750636094Mouse
12910817Pwgrq20_mpost-weaning growth rate QTL 20 (mouse)112719805750636094Mouse
12910818Ogrq5_moverall growth rate QTL 5 (mouse)112719805750636094Mouse
1357844Si5lq5_mserum IGFBP-5 level QTL 5 (mouse)Not determined112816587362165976Mouse
13524848Ppiq7_mprepulse inhibition QTL 7 (mouse)112856914762569147Mouse
1301426Desp2_mdespair 2 (mouse)Not determined112870858162708700Mouse
11522752Cocia18_mcocaine-induced activity, QTL 18 (mouse)113100820965008209Mouse
11059563Lmr31_mleishmaniasis resistance 31 (mouse)113210057766100694Mouse
1357782Char8_mP. chabaudi malaria resistance QTL 8 (mouse)Not determined113557861669684987Mouse
13208569Bmiq10_mbody mass index QTL 10 (mouse)113589082784890826Mouse
1301328Mol4_mmodifier of LPS-response 4 (mouse)Not determined113628257783481356Mouse
1301788Lbw8_mlupus NZB x NZW 8 (mouse)Not determined113650328770509492Mouse
1301896Tria1_mT-cell receptor induced activation 1 (mouse)Not determined113661356570613855Mouse
4141853Skmw17_mskeletal muscle weight 17 (mouse)Not determined113708094171081064Mouse
4142475Ity2a_mimmunity to S. typhimurium 2a (mouse)Not determined113776858060402716Mouse
10766457Nwa3_mNew Zealand White autoimmunity 3 (mouse)113801611572016209Mouse
10053675Eae44b_mexperimental allergic encephalomyelitis susceptibility 44b (mouse)Not determined113995072854094448Mouse
11532698Sluc36a_msusceptibility to lung cancer 36a (mouse)114225661776256730Mouse
11532699Sluc36b_msusceptibility to lung cancer 36b (mouse)114225661776256730Mouse
1300713Vmbic10_mventral midbrain iron content 10 (mouse)Not determined114277262654081064Mouse
4142300Ctrq3_mC. trachomatis resistance QTL 3 (mouse)Not determined114463003876854757Mouse
4141367Inf1_macute ozone induced inflammation (mouse)Not determined44630038113058009Mouse
1302021Nidd1n_mnon-insulin-dependent diabetes mellitus 1 in NSY (mouse)Not determined114516587379978324Mouse
1357878Mastr_mmodifier of astrocytoma (mouse)Not determined114570858189818733Mouse
1300765Bbaa4_mB.burgdorferi-associated arthritis 4 (mouse)Not determined114618516780185262Mouse
1301988Bmd11_mbone mineral density 11 (mouse)Not determined114631940780319522Mouse
13452402Hipmt3_mhippocampal morphometry trait 3 (mouse)114797732550277325Mouse


Expression


Sequence


RefSeq Acc Id: ENSMUST00000071807   ⟹   ENSMUSP00000071710
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1149,385,362 - 49,386,291 (+)Ensembl
GRCm38.p6 Ensembl1149,494,535 - 49,495,464 (+)Ensembl
RefSeq Acc Id: ENSMUST00000214948   ⟹   ENSMUSP00000150035
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1149,379,915 - 49,388,323 (+)Ensembl
GRCm38.p6 Ensembl1149,489,088 - 49,497,496 (+)Ensembl
RefSeq Acc Id: ENSMUST00000216450
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1149,379,897 - 49,388,323 (+)Ensembl
GRCm38.p6 Ensembl1149,489,070 - 49,497,496 (+)Ensembl
RefSeq Acc Id: NM_001011805   ⟹   NP_001011805
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391149,385,362 - 49,386,291 (+)NCBI
GRCm381149,494,535 - 49,495,464 (+)ENTREZGENE
MGSCv371149,308,037 - 49,308,966 (+)RGD
Celera1154,055,371 - 54,056,300 (+)RGD
cM Map11 ENTREZGENE
Sequence:
Protein Sequences
Protein RefSeqs NP_001011805 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAP71766 (Get FASTA)   NCBI Sequence Viewer  
  EDL33751 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000071710
  ENSMUSP00000071710.2
  ENSMUSP00000150035.2
RefSeq Acc Id: NP_001011805   ⟸   NM_001011805
- UniProtKB: Q7TQT1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000071710   ⟸   ENSMUST00000071807
RefSeq Acc Id: ENSMUSP00000150035   ⟸   ENSMUST00000214948
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q7TQT1-F1-model_v2 AlphaFold Q7TQT1 1-309 view protein structure


Additional Information

Database Acc Id Source(s)
AGR Gene MGI:3031219 AgrOrtholog
Ensembl Genes ENSMUSG00000059729 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000071807 ENTREZGENE
  ENSMUST00000071807.2 UniProtKB/TrEMBL
  ENSMUST00000214948.2 UniProtKB/TrEMBL
Gene3D-CATH Rhodopsin 7-helix transmembrane proteins UniProtKB/TrEMBL
InterPro 7TM_GPCR_Rhodpsn UniProtKB/TrEMBL
  GPCR_Rhodpsn_supfam UniProtKB/TrEMBL
  Olfact_rcpt UniProtKB/TrEMBL
KEGG Report mmu:258027 UniProtKB/TrEMBL
MGD MGI:3031219 ENTREZGENE
NCBI Gene 258027 ENTREZGENE
PANTHER OLFACTORY RECEPTOR UniProtKB/TrEMBL
  OLFACTORY RECEPTOR 2Y1 UniProtKB/TrEMBL
Pfam 7tm_4 UniProtKB/TrEMBL
PhenoGen Or2y1 PhenoGen
PRINTS GPCRRHODOPSN UniProtKB/TrEMBL
  OLFACTORYR UniProtKB/TrEMBL
PROSITE G_PROTEIN_RECEP_F1_1 UniProtKB/TrEMBL
  G_PROTEIN_RECEP_F1_2 UniProtKB/TrEMBL
Superfamily-SCOP Family A G protein-coupled receptor-like UniProtKB/TrEMBL
UniProt Q7TQT1 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-05-24 Or2y1  olfactory receptor family 2 subfamily Y member 1  Olfr1385  olfactory receptor 1385  Symbol and/or name change 5135510 APPROVED
2016-04-05 Olfr1385  olfactory receptor 1385  Olfr1549-ps1  olfactory receptor 1549, pseudogene 1  Data merged from RGD:1619748 737654 PROVISIONAL